Wall clock time and date at job start Mon Mar 30 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48503 * 109.46747 * 270.00243 * 3 2 1 5 5 H 1.48505 * 109.46960 * 29.99626 * 3 2 1 6 6 H 1.48494 * 109.47613 * 150.00037 * 3 2 1 7 7 C 1.37872 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00221 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00329 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47416 * 184.93021 * 9 7 2 11 11 C 1.46857 * 110.99834 * 299.92482 * 10 9 7 12 12 C 1.53042 * 109.60897 * 185.71131 * 11 10 9 13 13 C 1.53123 * 109.29138 * 300.99446 * 12 11 10 14 14 H 1.09001 * 109.53293 * 297.64835 * 13 12 11 15 15 C 1.50707 * 109.52727 * 177.50910 * 13 12 11 16 16 O 1.20827 * 119.99831 * 239.86830 * 15 13 12 17 17 O 1.34230 * 120.00027 * 60.14545 * 15 13 12 18 18 C 1.53152 * 109.17834 * 57.58129 * 13 12 11 19 19 H 1.09004 * 109.54689 * 182.27637 * 18 13 12 20 20 C 1.53021 * 109.31474 * 62.23778 * 18 13 12 21 21 C 1.52754 * 109.62701 * 180.89726 * 20 18 13 22 22 C 1.53003 * 109.72112 * 59.53750 * 21 20 18 23 23 C 1.53006 * 109.43862 * 300.15003 * 22 21 20 24 24 C 1.46829 * 111.00091 * 64.11114 * 10 9 7 25 25 H 1.08997 * 109.44139 * 294.08567 * 24 10 9 26 26 H 0.96996 * 120.00171 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47294 * 64.92721 * 9 7 2 28 28 H 1.09004 * 109.46908 * 304.93216 * 9 7 2 29 29 H 1.08995 * 109.45509 * 305.77294 * 11 10 9 30 30 H 1.09003 * 109.45415 * 65.72818 * 11 10 9 31 31 H 1.09000 * 109.55790 * 181.01706 * 12 11 10 32 32 H 1.08993 * 109.44053 * 60.90432 * 12 11 10 33 33 H 0.96696 * 116.99675 * 179.97438 * 17 15 13 34 34 H 1.08999 * 109.46854 * 300.51124 * 20 18 13 35 35 H 1.09002 * 109.46478 * 60.49765 * 20 18 13 36 36 H 1.08999 * 109.18292 * 299.55310 * 21 20 18 37 37 H 1.09003 * 109.49692 * 179.70954 * 21 20 18 38 38 H 1.08998 * 109.47261 * 180.16433 * 22 21 20 39 39 H 1.08998 * 109.48404 * 60.14331 * 22 21 20 40 40 H 1.09002 * 109.46304 * 299.99668 * 23 22 21 41 41 H 1.08996 * 109.46611 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0014 -2.5737 -0.1174 11 6 3.5316 -3.3971 1.0042 12 6 4.1730 -4.7845 0.9269 13 6 3.8010 -5.4402 -0.4059 14 1 2.7204 -5.5734 -0.4575 15 6 4.4796 -6.7815 -0.5141 16 8 5.2466 -6.9989 -1.4220 17 8 4.2275 -7.7364 0.3949 18 6 4.2613 -4.5392 -1.5557 19 1 3.9637 -4.9809 -2.5067 20 6 5.7845 -4.3996 -1.5106 21 6 6.2495 -3.4840 -2.6414 22 6 5.6020 -2.1061 -2.4894 23 6 4.0796 -2.2502 -2.5427 24 6 3.6131 -3.1611 -1.4058 25 1 2.5287 -3.2642 -1.4455 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.7582 0.9319 28 1 3.8752 -0.6056 -0.8414 29 1 3.8083 -2.9211 1.9449 30 1 2.4473 -3.4961 0.9527 31 1 3.8099 -5.4007 1.7494 32 1 5.2565 -4.6875 0.9949 33 1 4.6862 -8.5804 0.2836 34 1 6.0814 -3.9656 -0.5558 35 1 6.2428 -5.3824 -1.6210 36 1 5.9581 -3.9191 -3.5973 37 1 7.3341 -3.3819 -2.6042 38 1 5.9341 -1.4571 -3.2997 39 1 5.8926 -1.6713 -1.5331 40 1 3.7892 -2.6850 -3.4991 41 1 3.6179 -1.2688 -2.4349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:40 Heat of formation + Delta-G solvation = -100.096505 kcal Electronic energy + Delta-G solvation = -22283.281995 eV Core-core repulsion = 19162.237805 eV Total energy + Delta-G solvation = -3121.044190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84924 -39.13458 -36.16022 -35.07985 -34.17183 -32.15033 -29.78474 -29.04963 -27.78632 -25.12847 -22.85816 -22.28465 -21.89523 -20.65780 -19.83242 -18.00745 -17.76690 -16.75855 -16.30735 -15.71832 -15.01134 -14.87523 -14.64848 -14.33910 -13.69808 -13.33536 -13.32166 -12.64097 -12.47353 -12.25707 -12.10240 -11.93535 -11.70912 -11.44498 -11.26237 -11.00122 -10.91498 -10.81797 -10.56404 -10.30686 -10.27151 -10.21391 -9.98101 -9.74992 -9.56931 -9.47122 -9.11499 -8.59753 -7.15684 -6.12459 -4.11936 2.28206 3.12825 3.25526 3.34081 3.37581 4.37661 4.77357 4.80763 5.02444 5.21416 5.22259 5.36569 5.43340 5.46261 5.69141 5.80801 5.85597 5.93696 5.96931 6.03202 6.08835 6.14390 6.21414 6.32940 6.34256 6.44359 6.48880 6.63976 6.69148 6.76272 6.80931 6.86654 6.91787 6.94581 7.03531 7.15296 7.56495 7.97068 8.06257 8.13357 8.43068 8.90258 9.51056 11.00503 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.006682 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.414441 B = 4189.280628 C = 4862.723771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.151 3.849 10 N -0.523 5.523 11 C 0.063 3.937 12 C -0.107 4.107 13 C -0.076 4.076 14 H 0.104 0.896 15 C 0.484 3.516 16 O -0.512 6.512 17 O -0.518 6.518 18 C -0.061 4.061 19 H 0.070 0.930 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.110 4.110 24 C 0.100 3.900 25 H 0.051 0.949 26 H 0.263 0.737 27 H 0.026 0.974 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.880 -10.505 -1.118 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.587 4.587 8 H 0.092 0.908 9 C 0.024 3.976 10 N -0.247 5.247 11 C -0.066 4.066 12 C -0.145 4.145 13 C -0.096 4.096 14 H 0.122 0.878 15 C 0.327 3.673 16 O -0.400 6.400 17 O -0.329 6.329 18 C -0.080 4.080 19 H 0.089 0.911 20 C -0.156 4.156 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.009 4.009 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.244 -10.045 -1.297 14.406 hybrid contribution -0.469 0.324 -0.133 0.586 sum 9.774 -9.721 -1.430 13.859 Atomic orbital electron populations 1.69920 1.06369 1.26956 1.50511 1.24952 0.94632 0.99116 0.94253 0.86853 0.80477 0.83794 0.78646 1.20190 1.21398 1.18832 1.21684 0.90736 0.94552 1.51769 0.90779 1.20243 0.94491 0.85935 0.96895 1.62367 1.58493 1.03463 1.00423 1.21870 0.98249 0.91214 0.95231 1.21680 1.01931 0.96966 0.93881 1.21244 1.01031 0.87557 0.99719 0.87767 1.23823 0.79086 0.86354 0.78045 1.90624 1.34807 1.80802 1.33774 1.84596 1.68128 1.26470 1.53717 1.21109 0.97030 0.94288 0.95559 0.91142 1.21747 0.94289 0.99983 0.99616 1.21370 0.98907 0.95980 0.98367 1.21450 0.95526 0.96286 1.01710 1.21546 0.95755 1.00739 0.96722 1.21308 0.97391 0.91568 0.90611 0.93122 0.92724 0.95628 0.94926 0.91044 0.93487 0.91105 0.90995 0.73895 0.91032 0.90755 0.93165 0.93068 0.93573 0.90764 0.92886 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 20.89 27.37 -169.99 -4.65 16.23 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.06 6.69 56.52 0.38 -5.69 16 7 C -0.55 -14.48 8.28 -34.44 -0.29 -14.77 16 8 H 0.07 2.13 6.10 -52.48 -0.32 1.81 16 9 C 0.15 3.40 3.66 -4.98 -0.02 3.38 16 10 N -0.52 -9.97 3.23 -228.15 -0.74 -10.71 16 11 C 0.06 1.11 5.04 -3.83 -0.02 1.09 16 12 C -0.11 -1.52 4.96 -26.65 -0.13 -1.66 16 13 C -0.08 -1.09 2.48 -91.63 -0.23 -1.32 16 14 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 15 C 0.48 6.48 7.33 36.01 0.26 6.74 16 16 O -0.51 -7.90 14.29 -18.75 -0.27 -8.17 16 17 O -0.52 -5.50 13.36 -39.26 -0.52 -6.03 16 18 C -0.06 -0.95 1.71 -90.51 -0.15 -1.10 16 19 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 20 C -0.12 -1.80 4.40 -26.85 -0.12 -1.92 16 21 C -0.11 -1.57 5.90 -26.86 -0.16 -1.73 16 22 C -0.11 -1.76 5.71 -26.73 -0.15 -1.91 16 23 C -0.11 -1.93 4.91 -26.75 -0.13 -2.06 16 24 C 0.10 1.81 1.67 -67.75 -0.11 1.70 16 25 H 0.05 1.06 7.01 -51.93 -0.36 0.69 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.03 0.60 7.54 -51.93 -0.39 0.21 16 28 H 0.03 0.74 5.00 -51.93 -0.26 0.48 16 29 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 30 H 0.05 0.94 6.58 -51.93 -0.34 0.60 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.02 6.56 -51.93 -0.34 0.68 16 33 H 0.40 2.46 9.10 45.56 0.41 2.88 16 34 H 0.07 1.14 5.98 -51.93 -0.31 0.82 16 35 H 0.07 1.16 5.34 -51.93 -0.28 0.89 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.26 7.45 -51.93 -0.39 0.87 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.52 6.23 -51.93 -0.32 1.20 16 LS Contribution 300.95 15.07 4.54 4.54 Total: -1.00 -29.91 300.95 -7.66 -37.57 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.44 Total: 4.14 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.34 Total: -11.62 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.04 Total: -36.66 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.79 Total: -14.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.65 Total: 16.23 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.91 -7.66 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.531 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds