Wall clock time and date at job start Mon Mar 30 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48503 * 109.46747 * 270.00243 * 3 2 1 5 5 H 1.48505 * 109.46960 * 29.99626 * 3 2 1 6 6 H 1.48494 * 109.47613 * 150.00037 * 3 2 1 7 7 C 1.37872 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00221 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00329 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47416 * 184.93021 * 9 7 2 11 11 C 1.46857 * 110.99834 * 299.92482 * 10 9 7 12 12 C 1.53042 * 109.60897 * 185.71131 * 11 10 9 13 13 C 1.53123 * 109.29138 * 300.99446 * 12 11 10 14 14 H 1.09001 * 109.53293 * 297.64835 * 13 12 11 15 15 C 1.50707 * 109.52727 * 177.50910 * 13 12 11 16 16 O 1.20827 * 119.99831 * 239.86830 * 15 13 12 17 17 O 1.34230 * 120.00027 * 60.14545 * 15 13 12 18 18 C 1.53152 * 109.17834 * 57.58129 * 13 12 11 19 19 H 1.09004 * 109.54689 * 182.27637 * 18 13 12 20 20 C 1.53021 * 109.31474 * 62.23778 * 18 13 12 21 21 C 1.52754 * 109.62701 * 180.89726 * 20 18 13 22 22 C 1.53003 * 109.72112 * 59.53750 * 21 20 18 23 23 C 1.53006 * 109.43862 * 300.15003 * 22 21 20 24 24 C 1.46829 * 111.00091 * 64.11114 * 10 9 7 25 25 H 1.08997 * 109.44139 * 294.08567 * 24 10 9 26 26 H 0.96996 * 120.00171 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47294 * 64.92721 * 9 7 2 28 28 H 1.09004 * 109.46908 * 304.93216 * 9 7 2 29 29 H 1.08995 * 109.45509 * 305.77294 * 11 10 9 30 30 H 1.09003 * 109.45415 * 65.72818 * 11 10 9 31 31 H 1.09000 * 109.55790 * 181.01706 * 12 11 10 32 32 H 1.08993 * 109.44053 * 60.90432 * 12 11 10 33 33 H 0.96696 * 116.99675 * 179.97438 * 17 15 13 34 34 H 1.08999 * 109.46854 * 300.51124 * 20 18 13 35 35 H 1.09002 * 109.46478 * 60.49765 * 20 18 13 36 36 H 1.08999 * 109.18292 * 299.55310 * 21 20 18 37 37 H 1.09003 * 109.49692 * 179.70954 * 21 20 18 38 38 H 1.08998 * 109.47261 * 180.16433 * 22 21 20 39 39 H 1.08998 * 109.48404 * 60.14331 * 22 21 20 40 40 H 1.09002 * 109.46304 * 299.99668 * 23 22 21 41 41 H 1.08996 * 109.46611 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0014 -2.5737 -0.1174 11 6 3.5316 -3.3971 1.0042 12 6 4.1730 -4.7845 0.9269 13 6 3.8010 -5.4402 -0.4059 14 1 2.7204 -5.5734 -0.4575 15 6 4.4796 -6.7815 -0.5141 16 8 5.2466 -6.9989 -1.4220 17 8 4.2275 -7.7364 0.3949 18 6 4.2613 -4.5392 -1.5557 19 1 3.9637 -4.9809 -2.5067 20 6 5.7845 -4.3996 -1.5106 21 6 6.2495 -3.4840 -2.6414 22 6 5.6020 -2.1061 -2.4894 23 6 4.0796 -2.2502 -2.5427 24 6 3.6131 -3.1611 -1.4058 25 1 2.5287 -3.2642 -1.4455 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.7582 0.9319 28 1 3.8752 -0.6056 -0.8414 29 1 3.8083 -2.9211 1.9449 30 1 2.4473 -3.4961 0.9527 31 1 3.8099 -5.4007 1.7494 32 1 5.2565 -4.6875 0.9949 33 1 4.6862 -8.5804 0.2836 34 1 6.0814 -3.9656 -0.5558 35 1 6.2428 -5.3824 -1.6210 36 1 5.9581 -3.9191 -3.5973 37 1 7.3341 -3.3819 -2.6042 38 1 5.9341 -1.4571 -3.2997 39 1 5.8926 -1.6713 -1.5331 40 1 3.7892 -2.6850 -3.4991 41 1 3.6179 -1.2688 -2.4349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:39 Heat of formation + Delta-G solvation = -119.579166 kcal Electronic energy + Delta-G solvation = -22284.126827 eV Core-core repulsion = 19162.237805 eV Total energy + Delta-G solvation = -3121.889021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.04696 -40.38390 -37.20302 -36.46072 -35.64367 -34.12924 -31.11762 -30.43547 -29.48848 -26.66518 -24.34283 -23.63731 -23.18388 -22.17567 -21.07897 -19.49519 -18.96940 -18.50928 -17.46257 -16.95297 -16.50865 -16.28429 -16.08521 -15.96544 -15.16594 -14.90401 -14.42364 -14.28488 -13.98360 -13.59721 -13.51089 -13.25075 -13.21557 -12.89709 -12.72149 -12.45114 -12.40590 -12.23436 -11.99675 -11.87642 -11.78090 -11.64712 -11.46321 -11.37096 -11.09088 -10.81668 -10.74656 -10.43165 -8.85414 -8.28203 -6.31532 1.22562 1.35922 1.37905 1.49021 2.14897 2.35556 3.08091 3.29472 3.57134 3.76110 3.96146 4.14297 4.18427 4.24940 4.47282 4.48689 4.58002 4.64245 4.69316 4.73561 4.81279 4.84218 4.87969 4.99430 5.06578 5.11045 5.18145 5.19231 5.25110 5.33549 5.43452 5.46844 5.51791 5.55041 5.60421 5.73561 5.79719 6.17700 6.41905 6.53871 6.76187 7.07084 7.35451 8.88046 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.006682 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.414441 B = 4189.280628 C = 4862.723771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.245 1.245 7 C -0.540 4.540 8 H 0.036 0.964 9 C 0.159 3.841 10 N -0.512 5.512 11 C 0.062 3.938 12 C -0.093 4.093 13 C -0.080 4.080 14 H 0.100 0.900 15 C 0.497 3.503 16 O -0.531 6.531 17 O -0.510 6.510 18 C -0.055 4.055 19 H 0.071 0.929 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.105 4.105 23 C -0.112 4.112 24 C 0.102 3.898 25 H 0.012 0.988 26 H 0.264 0.736 27 H 0.025 0.975 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.427 0.573 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.494 -11.207 -1.143 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.168 1.168 7 C -0.579 4.579 8 H 0.054 0.946 9 C 0.031 3.969 10 N -0.236 5.236 11 C -0.067 4.067 12 C -0.131 4.131 13 C -0.100 4.100 14 H 0.118 0.882 15 C 0.341 3.659 16 O -0.422 6.422 17 O -0.324 6.324 18 C -0.074 4.074 19 H 0.089 0.911 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.149 4.149 24 C -0.007 4.007 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.288 0.712 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.881 -10.790 -1.309 16.854 hybrid contribution -1.368 0.413 -0.106 1.433 sum 11.513 -10.377 -1.415 15.564 Atomic orbital electron populations 1.70074 1.08293 1.27903 1.52719 1.25838 0.95369 1.03108 0.94195 0.85806 0.79700 0.78931 0.79128 1.19347 1.21419 1.16841 1.21912 0.92838 0.93003 1.50167 0.94578 1.20086 0.91596 0.88349 0.96822 1.62406 1.57571 1.02227 1.01359 1.21910 0.96678 0.93299 0.94779 1.21560 1.02109 0.94725 0.94660 1.21159 1.01071 0.88604 0.99128 0.88168 1.23283 0.78364 0.86253 0.78033 1.90625 1.35672 1.81211 1.34643 1.84525 1.68127 1.27316 1.52395 1.21004 0.97570 0.92606 0.96231 0.91109 1.21678 0.93226 1.00246 0.99695 1.21361 0.99892 0.94752 0.98305 1.21389 0.93631 0.97548 1.01721 1.21546 0.97422 0.99023 0.96944 1.21295 0.95410 0.93558 0.90430 0.97016 0.92749 0.95663 0.94478 0.90911 0.96650 0.89070 0.89972 0.71180 0.91556 0.90475 0.92551 0.91212 0.91963 0.91926 0.91774 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.48 13.96 21.44 0.30 -58.18 16 2 C 0.01 0.72 5.47 84.65 0.46 1.18 16 3 Si 0.94 43.29 27.37 68.60 1.88 45.17 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.25 -10.45 6.69 99.48 0.67 -9.79 16 7 C -0.54 -29.58 8.28 25.60 0.21 -29.37 16 8 H 0.04 2.21 6.10 -2.91 -0.02 2.19 16 9 C 0.16 7.20 3.66 85.56 0.31 7.51 16 10 N -0.51 -19.56 3.23 -875.74 -2.83 -22.39 16 11 C 0.06 2.20 5.04 86.33 0.44 2.63 16 12 C -0.09 -2.51 4.96 30.65 0.15 -2.36 16 13 C -0.08 -2.20 2.48 -11.45 -0.03 -2.23 16 14 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 15 C 0.50 12.08 7.33 71.24 0.52 12.61 16 16 O -0.53 -15.02 14.29 21.96 0.31 -14.71 16 17 O -0.51 -9.22 13.36 -51.42 -0.69 -9.90 16 18 C -0.06 -1.67 1.71 -10.72 -0.02 -1.69 16 19 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 20 C -0.11 -3.11 4.40 30.52 0.13 -2.97 16 21 C -0.11 -2.75 5.90 30.51 0.18 -2.57 16 22 C -0.11 -3.10 5.71 30.60 0.17 -2.92 16 23 C -0.11 -3.89 4.91 30.58 0.15 -3.74 16 24 C 0.10 3.75 1.67 44.93 0.08 3.82 16 25 H 0.01 0.52 7.01 -2.39 -0.02 0.51 16 26 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.03 1.16 7.54 -2.39 -0.02 1.14 16 28 H 0.04 1.67 5.00 -2.38 -0.01 1.66 16 29 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 30 H 0.02 0.64 6.58 -2.39 -0.02 0.62 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.11 6.56 -2.39 -0.02 2.09 16 33 H 0.43 3.66 9.10 -74.06 -0.67 2.99 16 34 H 0.07 1.93 5.98 -2.39 -0.01 1.91 16 35 H 0.08 2.19 5.34 -2.39 -0.01 2.17 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.00 7.45 -2.39 -0.02 1.98 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.93 6.23 -2.39 -0.01 1.91 16 Total: -1.00 -65.81 300.95 2.06 -63.74 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.32 Total: 16.36 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 2.77 Total: -20.09 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -2.53 Total: -80.57 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.37 Total: -24.61 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -65.81 2.06 -63.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.834 kcal (2) G-P(sol) polarization free energy of solvation -65.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds