Wall clock time and date at job start Mon Mar 30 2020 00:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00346 * 2 1 4 4 H 1.48495 * 109.46969 * 239.99322 * 3 2 1 5 5 H 1.48494 * 109.47428 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46914 * 119.99768 * 3 2 1 7 7 C 1.37885 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47244 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46963 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99712 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99817 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47068 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47244 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47010 * 179.97438 * 17 16 15 19 19 O 1.20754 * 120.00328 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.00078 * 179.97438 * 18 17 16 21 21 C 1.52995 * 117.50181 * 223.74883 * 20 18 17 22 22 C 1.52993 * 117.50081 * 155.08648 * 20 18 17 23 23 H 0.97000 * 119.99329 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47241 * 59.99332 * 9 7 2 25 25 H 1.09007 * 109.46760 * 299.99297 * 9 7 2 26 26 H 1.09006 * 109.47242 * 59.99387 * 10 9 7 27 27 H 1.08998 * 109.47297 * 299.99727 * 10 9 7 28 28 H 1.09000 * 109.46827 * 59.99928 * 11 10 9 29 29 H 1.09007 * 109.46971 * 300.00017 * 11 10 9 30 30 H 0.96998 * 120.00429 * 0.02562 * 12 11 10 31 31 H 1.09000 * 109.47467 * 60.00016 * 15 13 12 32 32 H 1.08998 * 109.47274 * 299.99820 * 15 13 12 33 33 H 1.09006 * 109.47188 * 59.99602 * 16 15 13 34 34 H 1.08998 * 109.47063 * 300.00117 * 16 15 13 35 35 H 1.09000 * 109.47268 * 60.00198 * 17 16 15 36 36 H 1.08998 * 109.47297 * 300.00110 * 17 16 15 37 37 H 1.08998 * 115.54512 * 9.41645 * 20 18 17 38 38 H 1.09000 * 117.49859 * 0.02562 * 21 20 18 39 39 H 1.08999 * 117.49900 * 145.01759 * 21 20 18 40 40 H 1.08998 * 117.50372 * 214.98309 * 22 20 18 41 41 H 1.09006 * 117.50059 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2844 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 0.0012 12 7 2.4319 -6.1007 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7901 -7.5929 0.0020 15 6 2.9618 -8.5168 0.0031 16 6 2.1967 -9.8418 0.0036 17 6 3.1909 -11.0048 0.0042 18 6 2.4373 -12.3098 0.0054 19 8 1.2297 -12.3098 0.0052 20 6 3.1906 -13.6151 0.0056 21 6 2.6942 -14.7175 -0.9320 22 6 2.4782 -14.8419 0.5783 23 1 -0.4849 0.8401 -0.0004 24 1 0.6244 -2.5570 -0.8896 25 1 0.6239 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8716 -3.6045 -0.8894 28 1 0.8530 -5.0451 -0.8886 29 1 0.8536 -5.0446 0.8914 30 1 3.3856 -5.9235 0.0021 31 1 3.5877 -8.4589 0.8936 32 1 3.5891 -8.4595 -0.8864 33 1 1.5704 -9.9001 -0.8866 34 1 1.5696 -9.8989 0.8933 35 1 3.8174 -10.9468 0.8943 36 1 3.8176 -10.9475 -0.8857 37 1 4.2660 -13.5371 0.1657 38 1 1.8229 -14.4986 -1.5492 39 1 3.4429 -15.3650 -1.3883 40 1 3.0848 -15.5713 1.1150 41 1 1.4647 -14.7050 0.9554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628623453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:37 Heat of formation + Delta-G solvation = -84.645745 kcal Electronic energy + Delta-G solvation = -18830.720160 eV Core-core repulsion = 15710.345966 eV Total energy + Delta-G solvation = -3120.374195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.29457 -39.44448 -36.57590 -35.50461 -34.38460 -33.29480 -31.28743 -29.46524 -26.79255 -25.07367 -23.08140 -22.91589 -21.62712 -20.69196 -19.87174 -19.52299 -17.26359 -16.63858 -16.40121 -16.27513 -15.49917 -15.37500 -15.24996 -14.67487 -14.44219 -14.35593 -13.51178 -13.39051 -13.03071 -12.37842 -12.26440 -12.23081 -12.01271 -11.80393 -11.62741 -11.61997 -11.12040 -11.01191 -10.93008 -10.88353 -10.72558 -10.62559 -9.97451 -9.86131 -9.77934 -9.33892 -9.11910 -8.74582 -8.37021 -6.01588 -4.04911 1.54466 2.82868 3.30174 3.31814 3.36692 3.38113 3.38853 3.62708 4.29113 4.42348 4.44067 4.54754 4.58695 4.76731 4.77884 4.94033 5.12681 5.17120 5.24250 5.28805 5.33917 5.41229 5.47322 5.57552 5.62328 5.76888 5.78723 5.92674 6.17086 6.18283 6.51776 6.60523 6.84615 7.01084 7.23467 7.63370 7.74616 7.76315 7.96992 8.37471 8.45031 9.01536 9.59102 11.09633 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.082142 B = 0.002084 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.791751 B =13430.329084 C =13660.695716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.728 5.728 13 C 0.504 3.496 14 O -0.543 6.543 15 C -0.141 4.141 16 C -0.097 4.097 17 C -0.165 4.165 18 C 0.381 3.619 19 O -0.449 6.449 20 C -0.224 4.224 21 C -0.151 4.151 22 C -0.154 4.154 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.690 -27.343 -0.157 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.379 5.379 13 C 0.290 3.710 14 O -0.420 6.420 15 C -0.181 4.181 16 C -0.135 4.135 17 C -0.203 4.203 18 C 0.256 3.744 19 O -0.322 6.322 20 C -0.243 4.243 21 C -0.188 4.188 22 C -0.191 4.191 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.231 0.769 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.999 -27.359 -0.156 29.130 hybrid contribution 1.180 1.153 0.013 1.650 sum 11.179 -26.207 -0.143 28.492 Atomic orbital electron populations 1.69958 1.06059 1.26799 1.50405 1.25039 0.94872 0.99310 0.95277 0.86631 0.79547 0.83079 0.78561 1.20262 1.21262 1.20254 1.21167 0.92941 0.90962 1.51118 0.92702 1.19033 0.93875 0.90870 0.97667 1.21882 0.99738 0.93403 1.00803 1.21634 0.91952 0.85221 1.01938 1.46246 1.10715 1.06055 1.74926 1.20650 0.89809 0.84174 0.76409 1.90721 1.17058 1.84829 1.49434 1.21677 0.98476 0.93646 1.04276 1.21152 0.96952 0.90476 1.04936 1.22082 1.00046 0.93415 1.04707 1.23803 0.89142 0.90911 0.70548 1.90432 1.16668 1.89635 1.35434 1.22914 1.01265 0.90784 1.09367 1.22953 1.03376 0.99128 0.93363 1.22973 1.02213 0.97463 0.96431 0.92863 0.96280 0.96274 0.92767 0.92760 0.91850 0.91857 0.76864 0.88946 0.88945 0.90571 0.90551 0.88233 0.88194 0.85715 0.88041 0.87766 0.87859 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.04 16 12 N -0.73 -10.29 5.56 -60.29 -0.33 -10.63 16 13 C 0.50 7.32 7.83 -10.98 -0.09 7.24 16 14 O -0.54 -10.49 15.98 5.56 0.09 -10.41 16 15 C -0.14 -1.29 5.70 -27.88 -0.16 -1.45 16 16 C -0.10 -1.00 3.79 -26.73 -0.10 -1.10 16 17 C -0.17 -1.10 5.64 -27.88 -0.16 -1.25 16 18 C 0.38 3.32 6.92 -29.03 -0.20 3.12 16 19 O -0.45 -5.79 16.05 6.00 0.10 -5.70 16 20 C -0.22 -1.37 6.12 -91.77 -0.56 -1.94 16 21 C -0.15 -0.88 10.14 -26.70 -0.27 -1.15 16 22 C -0.15 -0.94 10.05 -26.70 -0.27 -1.20 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 34 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.79 7.89 -51.93 -0.41 0.38 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -34.97 350.93 -8.72 -43.68 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.05 Total: -1.31 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.52 Total: -11.22 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.40 Total: -36.84 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.19 Total: -16.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.97 -8.72 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628623453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.963 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds