Wall clock time and date at job start Mon Mar 30 2020 00:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00346 * 2 1 4 4 H 1.48495 * 109.46969 * 239.99322 * 3 2 1 5 5 H 1.48494 * 109.47428 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46914 * 119.99768 * 3 2 1 7 7 C 1.37885 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47244 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46963 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99712 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99817 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47068 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47244 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47010 * 179.97438 * 17 16 15 19 19 O 1.20754 * 120.00328 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.00078 * 179.97438 * 18 17 16 21 21 C 1.52995 * 117.50181 * 223.74883 * 20 18 17 22 22 C 1.52993 * 117.50081 * 155.08648 * 20 18 17 23 23 H 0.97000 * 119.99329 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47241 * 59.99332 * 9 7 2 25 25 H 1.09007 * 109.46760 * 299.99297 * 9 7 2 26 26 H 1.09006 * 109.47242 * 59.99387 * 10 9 7 27 27 H 1.08998 * 109.47297 * 299.99727 * 10 9 7 28 28 H 1.09000 * 109.46827 * 59.99928 * 11 10 9 29 29 H 1.09007 * 109.46971 * 300.00017 * 11 10 9 30 30 H 0.96998 * 120.00429 * 0.02562 * 12 11 10 31 31 H 1.09000 * 109.47467 * 60.00016 * 15 13 12 32 32 H 1.08998 * 109.47274 * 299.99820 * 15 13 12 33 33 H 1.09006 * 109.47188 * 59.99602 * 16 15 13 34 34 H 1.08998 * 109.47063 * 300.00117 * 16 15 13 35 35 H 1.09000 * 109.47268 * 60.00198 * 17 16 15 36 36 H 1.08998 * 109.47297 * 300.00110 * 17 16 15 37 37 H 1.08998 * 115.54512 * 9.41645 * 20 18 17 38 38 H 1.09000 * 117.49859 * 0.02562 * 21 20 18 39 39 H 1.08999 * 117.49900 * 145.01759 * 21 20 18 40 40 H 1.08998 * 117.50372 * 214.98309 * 22 20 18 41 41 H 1.09006 * 117.50059 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2844 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 0.0012 12 7 2.4319 -6.1007 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7901 -7.5929 0.0020 15 6 2.9618 -8.5168 0.0031 16 6 2.1967 -9.8418 0.0036 17 6 3.1909 -11.0048 0.0042 18 6 2.4373 -12.3098 0.0054 19 8 1.2297 -12.3098 0.0052 20 6 3.1906 -13.6151 0.0056 21 6 2.6942 -14.7175 -0.9320 22 6 2.4782 -14.8419 0.5783 23 1 -0.4849 0.8401 -0.0004 24 1 0.6244 -2.5570 -0.8896 25 1 0.6239 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8716 -3.6045 -0.8894 28 1 0.8530 -5.0451 -0.8886 29 1 0.8536 -5.0446 0.8914 30 1 3.3856 -5.9235 0.0021 31 1 3.5877 -8.4589 0.8936 32 1 3.5891 -8.4595 -0.8864 33 1 1.5704 -9.9001 -0.8866 34 1 1.5696 -9.8989 0.8933 35 1 3.8174 -10.9468 0.8943 36 1 3.8176 -10.9475 -0.8857 37 1 4.2660 -13.5371 0.1657 38 1 1.8229 -14.4986 -1.5492 39 1 3.4429 -15.3650 -1.3883 40 1 3.0848 -15.5713 1.1150 41 1 1.4647 -14.7050 0.9554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628623453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:36 Heat of formation + Delta-G solvation = -107.907620 kcal Electronic energy + Delta-G solvation = -18831.728871 eV Core-core repulsion = 15710.345966 eV Total energy + Delta-G solvation = -3121.382905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.04371 -40.59513 -37.16490 -36.97462 -35.25948 -35.17622 -33.05201 -30.37459 -28.46858 -26.05421 -24.66943 -23.36038 -22.48522 -22.31741 -21.03969 -20.20549 -18.56896 -18.07381 -17.48888 -17.15611 -16.75452 -16.42246 -16.39212 -16.09092 -15.60013 -15.32458 -14.66030 -14.51003 -14.22955 -13.80068 -13.63186 -13.53862 -13.01268 -12.80392 -12.67982 -12.55698 -12.47065 -12.40619 -12.38506 -11.72558 -11.67555 -11.59449 -11.55179 -11.44981 -11.26621 -10.87905 -10.55571 -10.48080 -10.08074 -8.19768 -6.31873 0.91646 1.41561 1.44989 1.52898 1.68646 2.24436 2.42925 2.91632 2.98819 3.13720 3.73377 3.84873 3.96545 4.04787 4.09518 4.12311 4.17998 4.20039 4.27628 4.53927 4.66187 4.68813 4.71011 4.72803 4.83633 4.92903 4.97965 5.02952 5.10694 5.16175 5.16916 5.18026 5.36337 5.46568 5.53597 5.69091 5.83040 6.21021 6.61893 6.64213 6.85713 7.33251 7.37915 8.92176 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.082142 B = 0.002084 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.791751 B =13430.329084 C =13660.695716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.127 3.873 12 N -0.715 5.715 13 C 0.496 3.504 14 O -0.601 6.601 15 C -0.125 4.125 16 C -0.097 4.097 17 C -0.156 4.156 18 C 0.374 3.626 19 O -0.507 6.507 20 C -0.221 4.221 21 C -0.151 4.151 22 C -0.161 4.161 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.419 0.581 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.271 -27.918 -0.148 32.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.368 5.368 13 C 0.285 3.715 14 O -0.482 6.482 15 C -0.164 4.164 16 C -0.135 4.135 17 C -0.192 4.192 18 C 0.253 3.747 19 O -0.384 6.384 20 C -0.240 4.240 21 C -0.188 4.188 22 C -0.198 4.198 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.256 0.744 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.179 0.821 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.659 -27.950 -0.148 31.561 hybrid contribution -0.309 1.292 0.009 1.328 sum 14.350 -26.658 -0.139 30.275 Atomic orbital electron populations 1.70118 1.08039 1.27864 1.51593 1.26076 0.95773 1.03727 0.94751 0.85426 0.78135 0.77703 0.79324 1.18925 1.21259 1.18916 1.21660 0.93815 0.91911 1.50598 0.91305 1.18966 0.94536 0.93249 0.94896 1.21583 0.98334 0.91576 1.02270 1.21191 0.92225 0.86127 1.00177 1.46019 1.11145 1.05068 1.74531 1.21743 0.90044 0.85154 0.74596 1.90709 1.20030 1.85594 1.51893 1.21719 0.97161 0.89750 1.07787 1.21071 0.97525 0.93172 1.01766 1.22117 0.99126 0.90166 1.07824 1.24547 0.88615 0.93076 0.68427 1.90431 1.19174 1.90490 1.38310 1.23050 1.02611 0.89161 1.09177 1.23017 1.03343 0.99461 0.93015 1.23021 1.01495 0.98355 0.96961 0.92840 0.99189 0.99185 0.91147 0.91141 0.93807 0.93813 0.74396 0.85157 0.85163 0.93953 0.93927 0.84789 0.84822 0.82115 0.90173 0.85131 0.85430 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.13 4.62 5.67 86.38 0.49 5.11 16 12 N -0.72 -19.07 5.56 -463.05 -2.57 -21.64 16 13 C 0.50 14.00 7.83 87.66 0.69 14.69 16 14 O -0.60 -24.23 15.98 -3.04 -0.05 -24.28 16 15 C -0.12 -1.89 5.70 29.85 0.17 -1.72 16 16 C -0.10 -1.93 3.79 30.59 0.12 -1.81 16 17 C -0.16 -1.58 5.64 29.85 0.17 -1.41 16 18 C 0.37 6.20 6.92 29.10 0.20 6.40 16 19 O -0.51 -13.98 16.05 -1.43 -0.02 -14.00 16 20 C -0.22 -2.19 6.12 -11.54 -0.07 -2.26 16 21 C -0.15 -1.56 10.14 30.62 0.31 -1.25 16 22 C -0.16 -1.80 10.05 30.62 0.31 -1.49 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 25 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 26 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.42 7.66 8.47 -92.71 -0.79 6.88 16 31 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 1.11 8.06 -2.38 -0.02 1.09 16 34 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 35 H 0.13 0.52 8.14 -2.39 -0.02 0.51 16 36 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 1.28 7.89 -2.38 -0.02 1.26 16 Total: -1.00 -82.69 350.93 3.26 -79.43 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.21 Total: 8.31 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 3.38 Total: -16.15 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -2.29 Total: -79.15 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.07 Total: -38.28 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -82.69 3.26 -79.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628623453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.479 kcal (2) G-P(sol) polarization free energy of solvation -82.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds