Wall clock time and date at job start Mon Mar 30 2020 01:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42903 * 112.93937 * 50.61448 * 9 7 2 11 11 C 1.53929 * 113.73692 * 279.04542 * 9 7 2 12 12 N 1.48186 * 86.10288 * 221.95620 * 11 9 7 13 13 C 1.46905 * 111.07059 * 137.52085 * 12 11 9 14 14 C 1.52995 * 109.47095 * 70.56900 * 13 12 11 15 15 H 1.09001 * 110.32181 * 307.21956 * 14 13 12 16 16 C 1.54750 * 110.36150 * 184.99904 * 14 13 12 17 17 C 1.53465 * 103.63272 * 217.35932 * 16 14 13 18 18 C 1.52644 * 115.84831 * 230.96691 * 17 16 14 19 19 C 1.53992 * 86.73208 * 217.20908 * 18 17 16 20 20 C 1.52656 * 115.81871 * 129.60923 * 17 16 14 21 21 C 1.53433 * 105.20756 * 0.31288 * 17 16 14 22 22 O 1.44518 * 110.36372 * 69.55186 * 14 13 12 23 23 C 1.47961 * 90.79887 * 24.60080 * 12 11 9 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 0.96705 * 114.00014 * 309.67001 * 10 9 7 26 26 H 1.09000 * 113.76038 * 336.23957 * 11 9 7 27 27 H 1.09006 * 113.75722 * 107.60320 * 11 9 7 28 28 H 1.09002 * 109.47219 * 190.56932 * 13 12 11 29 29 H 1.08995 * 109.46861 * 310.56890 * 13 12 11 30 30 H 1.08997 * 110.59365 * 335.90101 * 16 14 13 31 31 H 1.08998 * 110.59161 * 98.67201 * 16 14 13 32 32 H 1.09005 * 113.66747 * 331.66732 * 18 17 16 33 33 H 1.08999 * 113.66636 * 102.74476 * 18 17 16 34 34 H 1.09003 * 113.57310 * 269.97217 * 19 18 17 35 35 H 1.09001 * 113.57554 * 139.19087 * 19 18 17 36 36 H 1.08999 * 113.67216 * 257.27672 * 20 17 16 37 37 H 1.09004 * 113.67398 * 28.36509 * 20 17 16 38 38 H 1.09003 * 110.42291 * 141.95153 * 21 17 16 39 39 H 1.08997 * 110.42794 * 264.30663 * 21 17 16 40 40 H 1.08999 * 113.76238 * 221.08440 * 23 12 11 41 41 H 1.08993 * 113.75891 * 89.71795 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5660 -1.0073 11 6 0.7555 -2.9221 1.3999 12 7 1.1892 -4.2894 1.0281 13 6 1.8773 -4.9477 2.1467 14 6 0.8641 -5.2808 3.2437 15 1 0.2958 -4.3916 3.5168 16 6 1.5848 -5.8610 4.4841 17 6 0.6199 -6.9417 4.9905 18 6 0.2641 -6.8743 6.4733 19 6 0.2891 -8.4139 6.4589 20 6 1.2354 -8.3147 5.2483 21 6 -0.5648 -6.9121 4.0159 22 8 -0.0244 -6.3328 2.8052 23 6 2.1612 -3.7396 0.0575 24 1 -0.4850 0.8400 0.0004 25 1 -0.3470 -1.8016 -1.0247 26 1 1.3275 -2.4876 2.2198 27 1 -0.3219 -2.8225 1.5319 28 1 2.3466 -5.8663 1.7946 29 1 2.6402 -4.2803 2.5473 30 1 2.5403 -6.3024 4.2008 31 1 1.7296 -5.0888 5.2395 32 1 1.0446 -6.4297 7.0909 33 1 -0.7228 -6.4544 6.6678 34 1 -0.6755 -8.8634 6.2228 35 1 0.7552 -8.8506 7.3422 36 1 1.0230 -9.0433 4.4659 37 1 2.2905 -8.2774 5.5195 38 1 -0.9261 -7.9228 3.8256 39 1 -1.3677 -6.2903 4.4118 40 1 2.2048 -4.2919 -0.8812 41 1 3.1451 -3.5447 0.4838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653390586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:36 Heat of formation + Delta-G solvation = -40.754377 kcal Electronic energy + Delta-G solvation = -21038.723853 eV Core-core repulsion = 17920.252931 eV Total energy + Delta-G solvation = -3118.470922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.57796 -38.87406 -36.84482 -34.23531 -32.06139 -31.40346 -29.24610 -27.15861 -25.97746 -25.41772 -25.05044 -23.24521 -21.90872 -20.54563 -18.77721 -18.45481 -17.24173 -16.09030 -15.82908 -15.34638 -15.08639 -15.03801 -14.77958 -14.14382 -13.80572 -13.57981 -13.27625 -12.96850 -12.60828 -12.34381 -11.97823 -11.83161 -11.70208 -11.42281 -11.30014 -11.12279 -11.00077 -10.74981 -10.67583 -10.46395 -10.36053 -10.26885 -10.01962 -9.97144 -9.45718 -9.20523 -8.60916 -8.14296 -7.70153 -6.23054 -4.33165 3.19403 3.28307 3.32116 4.00111 4.27057 4.28399 4.33941 4.56546 4.64384 4.78408 4.98987 5.00057 5.16833 5.26531 5.32485 5.50659 5.52773 5.62291 5.65553 5.68095 5.71327 5.77387 5.85455 5.93521 5.96974 6.05520 6.11945 6.17038 6.21231 6.26514 6.40924 6.51179 6.75949 7.09074 7.10763 7.27044 7.40990 7.78827 8.03407 8.08828 8.69018 9.36877 9.67689 10.82694 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.004063 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.803720 B = 6889.644590 C = 7111.307719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.245 3.755 10 O -0.571 6.571 11 C -0.013 4.013 12 N -0.471 5.471 13 C 0.026 3.974 14 C 0.085 3.915 15 H 0.068 0.932 16 C -0.137 4.137 17 C -0.116 4.116 18 C -0.127 4.127 19 C -0.142 4.142 20 C -0.125 4.125 21 C 0.065 3.935 22 O -0.351 6.351 23 C 0.007 3.993 24 H 0.269 0.731 25 H 0.387 0.613 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -12.054 12.600 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.203 3.797 10 O -0.381 6.381 11 C -0.142 4.142 12 N -0.193 5.193 13 C -0.103 4.103 14 C 0.027 3.973 15 H 0.086 0.914 16 C -0.176 4.176 17 C -0.116 4.116 18 C -0.165 4.165 19 C -0.179 4.179 20 C -0.162 4.162 21 C -0.012 4.012 22 O -0.270 6.270 23 C -0.122 4.122 24 H 0.080 0.920 25 H 0.241 0.759 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.070 -13.055 12.036 17.789 hybrid contribution 0.859 2.039 0.907 2.391 sum 1.929 -11.016 12.943 17.106 Atomic orbital electron populations 1.69449 1.06063 1.27607 1.50586 1.25055 0.94968 0.99573 0.93522 0.86389 0.80087 0.82866 0.77775 1.19631 1.20670 1.20819 1.21702 0.93690 0.90778 1.51431 0.91674 1.19743 0.85382 0.90696 0.83858 1.86055 1.47025 1.49338 1.55730 1.24706 1.00607 0.87428 1.01470 1.68652 1.25372 1.16592 1.08700 1.22663 0.94725 0.99871 0.93014 1.22998 0.90730 0.90837 0.92700 0.91397 1.22868 0.99101 0.97798 0.97791 1.22488 0.97027 0.96333 0.95757 1.22833 1.01987 0.96557 0.95100 1.22906 1.00080 0.96409 0.98549 1.22818 0.99103 0.96120 0.98143 1.23032 0.94155 0.98924 0.85093 1.89330 1.61566 1.49670 1.26407 1.24135 0.94751 0.96791 0.96485 0.92033 0.75916 0.92542 0.91043 0.90922 0.93501 0.90509 0.90536 0.89878 0.91209 0.90194 0.91532 0.91104 0.89990 0.89454 0.92313 0.90700 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 11.20 55.43 0.62 -23.71 16 2 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -14.55 8.61 -34.44 -0.30 -14.85 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 6.36 1.40 -90.84 -0.13 6.24 16 10 O -0.57 -15.93 13.48 -35.23 -0.48 -16.40 16 11 C -0.01 -0.31 6.45 -2.64 -0.02 -0.33 16 12 N -0.47 -10.40 6.26 -238.05 -1.49 -11.89 16 13 C 0.03 0.47 4.43 -3.82 -0.02 0.46 16 14 C 0.09 1.39 3.35 -25.81 -0.09 1.30 16 15 H 0.07 1.19 7.42 -51.93 -0.39 0.80 16 16 C -0.14 -1.71 6.14 -25.57 -0.16 -1.86 16 17 C -0.12 -1.27 1.17 -154.42 -0.18 -1.45 16 18 C -0.13 -1.15 7.30 -26.40 -0.19 -1.34 16 19 C -0.14 -1.15 7.95 -25.72 -0.20 -1.35 16 20 C -0.12 -1.17 7.22 -26.39 -0.19 -1.36 16 21 C 0.07 0.84 6.90 37.38 0.26 1.10 16 22 O -0.35 -6.13 11.35 -35.23 -0.40 -6.53 16 23 C 0.01 0.16 7.37 -2.76 -0.02 0.14 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.39 10.89 6.61 45.56 0.30 11.19 16 26 H 0.06 1.31 7.74 -51.93 -0.40 0.91 16 27 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 0.80 7.70 -51.93 -0.40 0.40 16 30 H 0.08 0.91 7.71 -51.93 -0.40 0.51 16 31 H 0.08 0.87 7.97 -51.93 -0.41 0.45 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.61 8.05 -51.93 -0.42 0.20 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.68 8.05 -51.93 -0.42 0.27 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 39 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 40 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.06 1.32 7.74 -51.93 -0.40 0.92 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -29.15 324.90 -9.47 -38.62 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.27 Total: 11.07 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.33 Total: -11.53 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.87 Total: -35.61 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.87 Total: -22.94 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.15 -9.47 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653390586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.132 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds