Wall clock time and date at job start Mon Mar 30 2020 01:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42903 * 112.93937 * 50.61448 * 9 7 2 11 11 C 1.53929 * 113.73692 * 279.04542 * 9 7 2 12 12 N 1.48186 * 86.10288 * 221.95620 * 11 9 7 13 13 C 1.46905 * 111.07059 * 137.52085 * 12 11 9 14 14 C 1.52995 * 109.47095 * 70.56900 * 13 12 11 15 15 H 1.09001 * 110.32181 * 307.21956 * 14 13 12 16 16 C 1.54750 * 110.36150 * 184.99904 * 14 13 12 17 17 C 1.53465 * 103.63272 * 217.35932 * 16 14 13 18 18 C 1.52644 * 115.84831 * 230.96691 * 17 16 14 19 19 C 1.53992 * 86.73208 * 217.20908 * 18 17 16 20 20 C 1.52656 * 115.81871 * 129.60923 * 17 16 14 21 21 C 1.53433 * 105.20756 * 0.31288 * 17 16 14 22 22 O 1.44518 * 110.36372 * 69.55186 * 14 13 12 23 23 C 1.47961 * 90.79887 * 24.60080 * 12 11 9 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 0.96705 * 114.00014 * 309.67001 * 10 9 7 26 26 H 1.09000 * 113.76038 * 336.23957 * 11 9 7 27 27 H 1.09006 * 113.75722 * 107.60320 * 11 9 7 28 28 H 1.09002 * 109.47219 * 190.56932 * 13 12 11 29 29 H 1.08995 * 109.46861 * 310.56890 * 13 12 11 30 30 H 1.08997 * 110.59365 * 335.90101 * 16 14 13 31 31 H 1.08998 * 110.59161 * 98.67201 * 16 14 13 32 32 H 1.09005 * 113.66747 * 331.66732 * 18 17 16 33 33 H 1.08999 * 113.66636 * 102.74476 * 18 17 16 34 34 H 1.09003 * 113.57310 * 269.97217 * 19 18 17 35 35 H 1.09001 * 113.57554 * 139.19087 * 19 18 17 36 36 H 1.08999 * 113.67216 * 257.27672 * 20 17 16 37 37 H 1.09004 * 113.67398 * 28.36509 * 20 17 16 38 38 H 1.09003 * 110.42291 * 141.95153 * 21 17 16 39 39 H 1.08997 * 110.42794 * 264.30663 * 21 17 16 40 40 H 1.08999 * 113.76238 * 221.08440 * 23 12 11 41 41 H 1.08993 * 113.75891 * 89.71795 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5660 -1.0073 11 6 0.7555 -2.9221 1.3999 12 7 1.1892 -4.2894 1.0281 13 6 1.8773 -4.9477 2.1467 14 6 0.8641 -5.2808 3.2437 15 1 0.2958 -4.3916 3.5168 16 6 1.5848 -5.8610 4.4841 17 6 0.6199 -6.9417 4.9905 18 6 0.2641 -6.8743 6.4733 19 6 0.2891 -8.4139 6.4589 20 6 1.2354 -8.3147 5.2483 21 6 -0.5648 -6.9121 4.0159 22 8 -0.0244 -6.3328 2.8052 23 6 2.1612 -3.7396 0.0575 24 1 -0.4850 0.8400 0.0004 25 1 -0.3470 -1.8016 -1.0247 26 1 1.3275 -2.4876 2.2198 27 1 -0.3219 -2.8225 1.5319 28 1 2.3466 -5.8663 1.7946 29 1 2.6402 -4.2803 2.5473 30 1 2.5403 -6.3024 4.2008 31 1 1.7296 -5.0888 5.2395 32 1 1.0446 -6.4297 7.0909 33 1 -0.7228 -6.4544 6.6678 34 1 -0.6755 -8.8634 6.2228 35 1 0.7552 -8.8506 7.3422 36 1 1.0230 -9.0433 4.4659 37 1 2.2905 -8.2774 5.5195 38 1 -0.9261 -7.9228 3.8256 39 1 -1.3677 -6.2903 4.4118 40 1 2.2048 -4.2919 -0.8812 41 1 3.1451 -3.5447 0.4838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653390586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:35 Heat of formation + Delta-G solvation = -62.388405 kcal Electronic energy + Delta-G solvation = -21039.661975 eV Core-core repulsion = 17920.252931 eV Total energy + Delta-G solvation = -3119.409044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59419 -40.60481 -37.93345 -36.17955 -34.13762 -32.76428 -30.47996 -28.70944 -27.06204 -26.87624 -26.66881 -24.53734 -23.07011 -21.87299 -20.51188 -19.53651 -19.22521 -17.34911 -17.15476 -16.81093 -16.74570 -16.29669 -15.98953 -15.65844 -15.57417 -14.78811 -14.48013 -14.18562 -14.07336 -13.83846 -13.50498 -13.35294 -13.06378 -12.86346 -12.75549 -12.61737 -12.41636 -12.26120 -12.08125 -11.96078 -11.78743 -11.33058 -11.23603 -11.08931 -10.98856 -10.66012 -10.60097 -10.12690 -9.52283 -8.24308 -6.43112 1.40668 1.43773 1.55137 2.37122 2.88075 2.97766 3.15106 3.41927 3.54334 3.68272 3.89246 3.94756 3.98033 4.04033 4.23662 4.24474 4.36833 4.43387 4.50199 4.53679 4.61403 4.69484 4.76968 4.80599 4.85418 4.88121 4.89706 4.93788 5.06430 5.10569 5.12195 5.16871 5.37445 5.41133 5.49722 5.52429 5.73817 5.93948 5.98935 6.35752 6.62848 7.30179 7.50284 8.80882 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.004063 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.803720 B = 6889.644590 C = 7111.307719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.066 0.934 9 C 0.217 3.783 10 O -0.585 6.585 11 C 0.003 3.997 12 N -0.482 5.482 13 C 0.027 3.973 14 C 0.084 3.916 15 H 0.048 0.952 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.124 4.124 21 C 0.058 3.942 22 O -0.386 6.386 23 C 0.016 3.984 24 H 0.273 0.727 25 H 0.381 0.619 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -12.551 14.307 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.173 4.173 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.599 4.599 8 H 0.084 0.916 9 C 0.177 3.823 10 O -0.396 6.396 11 C -0.126 4.126 12 N -0.205 5.205 13 C -0.102 4.102 14 C 0.026 3.974 15 H 0.066 0.934 16 C -0.167 4.167 17 C -0.119 4.119 18 C -0.161 4.161 19 C -0.171 4.171 20 C -0.161 4.161 21 C -0.018 4.018 22 O -0.306 6.306 23 C -0.113 4.113 24 H 0.083 0.917 25 H 0.234 0.766 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.354 -13.574 13.753 19.467 hybrid contribution 0.411 2.145 0.351 2.212 sum 2.764 -11.429 14.105 18.363 Atomic orbital electron populations 1.69534 1.07290 1.28572 1.50604 1.25836 0.95788 1.02799 0.92904 0.85346 0.78924 0.78563 0.77798 1.19057 1.20465 1.20184 1.21942 0.93877 0.91742 1.52332 0.91601 1.20149 0.85809 0.92002 0.84378 1.86038 1.47531 1.49125 1.56870 1.24407 0.99045 0.88717 1.00477 1.68562 1.26128 1.15549 1.10236 1.22743 0.95287 0.99905 0.92259 1.22959 0.90465 0.90406 0.93605 0.93419 1.22837 0.99289 0.98427 0.96130 1.22507 0.95909 0.96994 0.96497 1.22863 1.02361 0.97486 0.93438 1.22880 1.00047 0.95696 0.98467 1.22854 0.99905 0.94707 0.98624 1.23238 0.94984 0.99244 0.84335 1.89278 1.62194 1.50037 1.29068 1.24084 0.95145 0.95172 0.96892 0.91716 0.76612 0.92187 0.93417 0.89971 0.92306 0.89644 0.89327 0.88853 0.91159 0.89807 0.90066 0.91558 0.89043 0.88221 0.92343 0.90903 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.43 11.20 21.45 0.24 -50.19 16 2 C 0.03 1.41 5.40 84.65 0.46 1.87 16 3 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.56 -30.43 8.61 25.60 0.22 -30.21 16 8 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 9 C 0.22 11.47 1.40 -10.89 -0.02 11.45 16 10 O -0.59 -33.57 13.48 -148.98 -2.01 -35.58 16 11 C 0.00 0.14 6.45 86.36 0.56 0.70 16 12 N -0.48 -21.38 6.26 -910.26 -5.70 -27.08 16 13 C 0.03 0.93 4.43 86.30 0.38 1.32 16 14 C 0.08 2.68 3.35 31.19 0.10 2.78 16 15 H 0.05 1.70 7.42 -2.39 -0.02 1.68 16 16 C -0.13 -2.96 6.14 31.35 0.19 -2.76 16 17 C -0.12 -2.38 1.17 -52.12 -0.06 -2.44 16 18 C -0.12 -1.91 7.30 30.81 0.22 -1.69 16 19 C -0.13 -1.77 7.95 31.25 0.25 -1.52 16 20 C -0.12 -2.01 7.22 30.81 0.22 -1.78 16 21 C 0.06 1.46 6.90 72.13 0.50 1.96 16 22 O -0.39 -13.47 11.35 -148.98 -1.69 -15.16 16 23 C 0.02 0.71 7.37 86.41 0.64 1.34 16 24 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.38 22.20 6.61 -74.05 -0.49 21.71 16 26 H 0.06 2.81 7.74 -2.39 -0.02 2.80 16 27 H 0.05 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.06 1.92 7.70 -2.39 -0.02 1.91 16 30 H 0.08 1.81 7.71 -2.39 -0.02 1.79 16 31 H 0.09 1.81 7.97 -2.39 -0.02 1.79 16 32 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 33 H 0.07 1.08 8.05 -2.39 -0.02 1.06 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 1.14 8.05 -2.39 -0.02 1.12 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 2.17 7.92 -2.39 -0.02 2.15 16 39 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 40 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.08 3.33 7.74 -2.39 -0.02 3.31 16 Total: -1.00 -62.36 324.90 -2.95 -65.31 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.52 Total: 37.91 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 3.67 Total: -18.98 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -5.46 Total: -77.27 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -3.70 Total: -50.74 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -62.36 -2.95 -65.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653390586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.924 kcal (2) G-P(sol) polarization free energy of solvation -62.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds