Wall clock time and date at job start Mon Mar 30 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48503 * 109.47044 * 239.99681 * 3 2 1 5 5 H 1.48498 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47160 * 119.99608 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93456 * 309.66590 * 9 7 2 11 11 C 1.53932 * 113.73345 * 81.23268 * 9 7 2 12 12 N 1.48304 * 86.06231 * 138.13032 * 11 9 7 13 13 C 1.46896 * 111.00332 * 222.41853 * 12 11 9 14 14 C 1.52999 * 109.47079 * 289.34862 * 13 12 11 15 15 H 1.08996 * 109.96666 * 305.19896 * 14 13 12 16 16 C 1.56424 * 109.97636 * 183.90177 * 14 13 12 17 17 C 1.49683 * 99.98478 * 219.71661 * 16 14 13 18 18 H 1.09002 * 107.89327 * 289.55211 * 17 16 14 19 19 C 1.49480 * 130.18472 * 155.64575 * 17 16 14 20 20 C 1.56326 * 102.49894 * 202.82394 * 19 17 16 21 21 C 1.55578 * 105.94557 * 23.21746 * 20 19 17 22 22 C 1.52213 * 104.67757 * 7.54657 * 21 20 19 23 23 H 1.08998 * 110.67639 * 83.83253 * 22 21 20 24 24 O 1.41472 * 121.58362 * 216.28873 * 22 21 20 25 25 C 1.47962 * 90.75276 * 335.30996 * 12 11 9 26 26 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00311 * 50.33594 * 10 9 7 28 28 H 1.09004 * 113.75677 * 252.50317 * 11 9 7 29 29 H 1.09000 * 113.76003 * 23.86640 * 11 9 7 30 30 H 1.09002 * 109.47229 * 49.35363 * 13 12 11 31 31 H 1.09007 * 109.46883 * 169.34764 * 13 12 11 32 32 H 1.09008 * 111.30800 * 337.40592 * 16 14 13 33 33 H 1.09004 * 111.30393 * 102.02925 * 16 14 13 34 34 H 1.09000 * 111.18498 * 84.22103 * 19 17 16 35 35 H 1.09004 * 110.15169 * 320.95193 * 19 17 16 36 36 H 1.09004 * 110.15014 * 264.09777 * 20 19 17 37 37 H 1.08998 * 110.21762 * 142.37149 * 20 19 17 38 38 H 1.09008 * 110.39881 * 248.75093 * 21 20 19 39 39 H 1.09003 * 110.49525 * 126.39935 * 21 20 19 40 40 H 1.08997 * 113.75944 * 270.36826 * 25 12 11 41 41 H 1.09001 * 113.85960 * 139.01471 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.2446 -2.5611 1.0132 11 6 0.7557 -2.9286 -1.3922 12 7 1.1877 -4.2954 -1.0119 13 6 1.8744 -4.9601 -2.1274 14 6 0.8599 -5.2994 -3.2213 15 1 0.0442 -5.8887 -2.8026 16 6 1.5602 -6.0957 -4.3712 17 6 0.8932 -5.4762 -5.5595 18 1 -0.1441 -5.8107 -5.5735 19 6 1.3567 -5.3640 -6.9762 20 6 0.5305 -4.1477 -7.5071 21 6 0.1370 -3.3176 -6.2515 22 6 0.8990 -3.9674 -5.1052 23 1 1.9169 -3.5813 -5.0519 24 8 0.3382 -4.0776 -3.8110 25 6 2.1608 -3.7400 -0.0455 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3474 -1.7966 1.0268 28 1 -0.3215 -2.8278 -1.5256 29 1 1.3291 -2.4995 -2.2139 30 1 2.6370 -4.2950 -2.5327 31 1 2.3442 -5.8767 -1.7705 32 1 2.6350 -5.9144 -4.3811 33 1 1.3413 -7.1615 -4.3051 34 1 1.1250 -6.2681 -7.5392 35 1 2.4255 -5.1520 -7.0059 36 1 -0.3644 -4.4976 -8.0217 37 1 1.1390 -3.5444 -8.1807 38 1 -0.9372 -3.3791 -6.0767 39 1 0.4428 -2.2781 -6.3700 40 1 3.1443 -3.5477 -0.4741 41 1 2.2070 -4.2859 0.8968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654251194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:59 Heat of formation + Delta-G solvation = -51.509824 kcal Electronic energy + Delta-G solvation = -21524.422376 eV Core-core repulsion = 18405.485063 eV Total energy + Delta-G solvation = -3118.937313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62448 -38.67707 -35.85239 -34.06569 -32.16955 -31.96925 -29.56583 -27.81943 -26.70626 -25.03017 -24.81504 -22.34047 -20.98805 -20.20956 -19.81502 -18.47808 -17.19567 -16.97929 -15.65300 -15.11349 -15.02866 -14.70939 -14.48566 -14.22509 -13.82008 -13.67335 -13.11140 -12.69863 -12.33565 -12.07382 -11.96075 -11.85164 -11.62437 -11.37666 -11.30702 -11.10197 -10.95200 -10.75605 -10.65257 -10.51522 -10.39520 -10.24396 -10.01066 -9.88783 -9.19535 -9.10339 -8.54699 -8.06670 -7.65889 -6.16493 -4.25918 3.25612 3.30705 3.33124 3.53059 4.31964 4.46312 4.54298 4.62302 4.85014 5.03686 5.06370 5.10450 5.19669 5.32429 5.37113 5.42069 5.54276 5.56440 5.71516 5.75367 5.80350 5.88178 5.97572 6.02875 6.08218 6.12365 6.16998 6.24647 6.28360 6.41656 6.50147 6.68782 6.80627 7.26836 7.31693 7.34798 7.51326 7.85647 8.09782 8.15302 8.74529 9.43085 9.72976 10.89373 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.005522 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.953238 B = 5069.566247 C = 5829.086605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.238 3.762 10 O -0.573 6.573 11 C 0.014 3.986 12 N -0.481 5.481 13 C 0.009 3.991 14 C 0.089 3.911 15 H 0.092 0.908 16 C -0.127 4.127 17 C -0.150 4.150 18 H 0.073 0.927 19 C -0.100 4.100 20 C -0.117 4.117 21 C -0.116 4.116 22 C 0.063 3.937 23 H 0.063 0.937 24 O -0.349 6.349 25 C 0.007 3.993 26 H 0.270 0.730 27 H 0.387 0.613 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -9.370 -13.348 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.197 3.803 10 O -0.384 6.384 11 C -0.114 4.114 12 N -0.203 5.203 13 C -0.120 4.120 14 C 0.031 3.969 15 H 0.110 0.890 16 C -0.165 4.165 17 C -0.168 4.168 18 H 0.092 0.908 19 C -0.138 4.138 20 C -0.155 4.155 21 C -0.154 4.154 22 C 0.004 3.996 23 H 0.081 0.919 24 O -0.267 6.267 25 C -0.121 4.121 26 H 0.080 0.920 27 H 0.241 0.759 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.828 -10.146 -12.904 16.516 hybrid contribution 0.979 1.809 -0.657 2.159 sum 2.807 -8.337 -13.561 16.164 Atomic orbital electron populations 1.69432 1.06026 1.27700 1.50477 1.25037 0.94952 0.99450 0.93591 0.86519 0.79587 0.82370 0.78718 1.20188 1.21033 1.20018 1.21605 0.93500 0.90889 1.51580 0.91969 1.19862 0.85444 0.90564 0.84479 1.86026 1.47049 1.49504 1.55841 1.24518 1.00699 0.86119 1.00105 1.68620 1.25132 1.17795 1.08780 1.22962 0.95602 0.99874 0.93575 1.23600 0.96196 0.84829 0.92257 0.88987 1.22052 1.00472 1.00015 0.93953 1.22113 1.01891 0.97931 0.94904 0.90826 1.21311 1.00024 0.98225 0.94244 1.22827 0.99755 0.95877 0.97051 1.21976 1.01205 0.99330 0.92902 1.23239 0.96602 0.95117 0.84618 0.91885 1.88660 1.68549 1.42120 1.27417 1.24109 0.94778 0.96937 0.96301 0.91988 0.75913 0.91181 0.92232 0.94495 0.90888 0.90649 0.90185 0.91370 0.91464 0.91389 0.91356 0.90711 0.90929 0.92071 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 11.20 55.43 0.62 -24.31 16 2 C 0.07 1.96 5.40 -17.82 -0.10 1.86 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -14.90 8.61 -34.44 -0.30 -15.20 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 6.32 1.40 -90.84 -0.13 6.19 16 10 O -0.57 -16.18 13.48 -35.23 -0.48 -16.65 16 11 C 0.01 0.36 5.60 -2.57 -0.01 0.34 16 12 N -0.48 -10.60 6.27 -237.94 -1.49 -12.10 16 13 C 0.01 0.16 4.59 -3.83 -0.02 0.15 16 14 C 0.09 1.41 3.69 -24.89 -0.09 1.32 16 15 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 16 C -0.13 -1.51 6.41 -26.53 -0.17 -1.68 16 17 C -0.15 -1.75 2.70 -91.50 -0.25 -2.00 16 18 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 19 C -0.10 -0.95 6.69 -26.68 -0.18 -1.13 16 20 C -0.12 -1.10 6.95 -23.57 -0.16 -1.27 16 21 C -0.12 -1.43 6.75 -25.76 -0.17 -1.60 16 22 C 0.06 0.91 3.76 -24.64 -0.09 0.82 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 O -0.35 -6.34 8.94 -35.14 -0.31 -6.66 16 25 C 0.01 0.17 7.36 -2.76 -0.02 0.15 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.39 11.06 6.60 45.56 0.30 11.36 16 28 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 29 H 0.06 1.51 7.28 -51.93 -0.38 1.13 16 30 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 31 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 32 H 0.07 0.85 7.91 -51.92 -0.41 0.44 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.32 7.74 -51.93 -0.40 0.92 16 41 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -29.54 319.81 -9.88 -39.42 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.33 Total: 11.56 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.69 Total: -12.05 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.87 Total: -36.40 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.79 Total: -23.31 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.54 -9.88 -39.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.087 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds