Wall clock time and date at job start Mon Mar 30 2020 01:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48503 * 109.47044 * 239.99681 * 3 2 1 5 5 H 1.48498 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47160 * 119.99608 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93456 * 309.66590 * 9 7 2 11 11 C 1.53932 * 113.73345 * 81.23268 * 9 7 2 12 12 N 1.48304 * 86.06231 * 138.13032 * 11 9 7 13 13 C 1.46896 * 111.00332 * 222.41853 * 12 11 9 14 14 C 1.52999 * 109.47079 * 289.34862 * 13 12 11 15 15 H 1.08996 * 109.96666 * 305.19896 * 14 13 12 16 16 C 1.56424 * 109.97636 * 183.90177 * 14 13 12 17 17 C 1.49683 * 99.98478 * 219.71661 * 16 14 13 18 18 H 1.09002 * 107.89327 * 289.55211 * 17 16 14 19 19 C 1.49480 * 130.18472 * 155.64575 * 17 16 14 20 20 C 1.56326 * 102.49894 * 202.82394 * 19 17 16 21 21 C 1.55578 * 105.94557 * 23.21746 * 20 19 17 22 22 C 1.52213 * 104.67757 * 7.54657 * 21 20 19 23 23 H 1.08998 * 110.67639 * 83.83253 * 22 21 20 24 24 O 1.41472 * 121.58362 * 216.28873 * 22 21 20 25 25 C 1.47962 * 90.75276 * 335.30996 * 12 11 9 26 26 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00311 * 50.33594 * 10 9 7 28 28 H 1.09004 * 113.75677 * 252.50317 * 11 9 7 29 29 H 1.09000 * 113.76003 * 23.86640 * 11 9 7 30 30 H 1.09002 * 109.47229 * 49.35363 * 13 12 11 31 31 H 1.09007 * 109.46883 * 169.34764 * 13 12 11 32 32 H 1.09008 * 111.30800 * 337.40592 * 16 14 13 33 33 H 1.09004 * 111.30393 * 102.02925 * 16 14 13 34 34 H 1.09000 * 111.18498 * 84.22103 * 19 17 16 35 35 H 1.09004 * 110.15169 * 320.95193 * 19 17 16 36 36 H 1.09004 * 110.15014 * 264.09777 * 20 19 17 37 37 H 1.08998 * 110.21762 * 142.37149 * 20 19 17 38 38 H 1.09008 * 110.39881 * 248.75093 * 21 20 19 39 39 H 1.09003 * 110.49525 * 126.39935 * 21 20 19 40 40 H 1.08997 * 113.75944 * 270.36826 * 25 12 11 41 41 H 1.09001 * 113.85960 * 139.01471 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.2446 -2.5611 1.0132 11 6 0.7557 -2.9286 -1.3922 12 7 1.1877 -4.2954 -1.0119 13 6 1.8744 -4.9601 -2.1274 14 6 0.8599 -5.2994 -3.2213 15 1 0.0442 -5.8887 -2.8026 16 6 1.5602 -6.0957 -4.3712 17 6 0.8932 -5.4762 -5.5595 18 1 -0.1441 -5.8107 -5.5735 19 6 1.3567 -5.3640 -6.9762 20 6 0.5305 -4.1477 -7.5071 21 6 0.1370 -3.3176 -6.2515 22 6 0.8990 -3.9674 -5.1052 23 1 1.9169 -3.5813 -5.0519 24 8 0.3382 -4.0776 -3.8110 25 6 2.1608 -3.7400 -0.0455 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3474 -1.7966 1.0268 28 1 -0.3215 -2.8278 -1.5256 29 1 1.3291 -2.4995 -2.2139 30 1 2.6370 -4.2950 -2.5327 31 1 2.3442 -5.8767 -1.7705 32 1 2.6350 -5.9144 -4.3811 33 1 1.3413 -7.1615 -4.3051 34 1 1.1250 -6.2681 -7.5392 35 1 2.4255 -5.1520 -7.0059 36 1 -0.3644 -4.4976 -8.0217 37 1 1.1390 -3.5444 -8.1807 38 1 -0.9372 -3.3791 -6.0767 39 1 0.4428 -2.2781 -6.3700 40 1 3.1443 -3.5477 -0.4741 41 1 2.2070 -4.2859 0.8968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654251194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:58 Heat of formation + Delta-G solvation = -73.532721 kcal Electronic energy + Delta-G solvation = -21525.377360 eV Core-core repulsion = 18405.485063 eV Total energy + Delta-G solvation = -3119.892298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78004 -40.47428 -37.03487 -35.96803 -34.13060 -33.34809 -31.01369 -28.76054 -28.41897 -26.84071 -26.43420 -23.90749 -22.12002 -21.27015 -20.89586 -20.44750 -19.17739 -18.21823 -17.14423 -17.03177 -16.38789 -15.97953 -15.93005 -15.74807 -15.48275 -15.03081 -14.46276 -14.04903 -13.89407 -13.63116 -13.38954 -13.27748 -13.23023 -12.82738 -12.78101 -12.53514 -12.42071 -12.27717 -12.15094 -11.94577 -11.73751 -11.62637 -11.32069 -11.14381 -11.05998 -10.62609 -10.40641 -10.07517 -9.55539 -8.24053 -6.42517 1.40174 1.41732 1.50229 2.36089 2.46925 2.96057 3.13800 3.53032 3.60982 3.66704 3.94254 4.03852 4.06573 4.13770 4.24418 4.27439 4.32477 4.39328 4.51694 4.53653 4.60365 4.67022 4.72475 4.74843 4.89329 4.91284 4.96371 5.06756 5.12173 5.19854 5.21484 5.23590 5.31593 5.42410 5.44324 5.51118 5.74282 5.98704 6.11742 6.35454 6.61972 7.29899 7.49782 8.80853 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.005522 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.953238 B = 5069.566247 C = 5829.086605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.026 3.974 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.563 4.563 8 H 0.063 0.937 9 C 0.210 3.790 10 O -0.584 6.584 11 C 0.036 3.964 12 N -0.484 5.484 13 C 0.010 3.990 14 C 0.082 3.918 15 H 0.084 0.916 16 C -0.114 4.114 17 C -0.133 4.133 18 H 0.066 0.934 19 C -0.095 4.095 20 C -0.110 4.110 21 C -0.120 4.120 22 C 0.041 3.959 23 H 0.053 0.947 24 O -0.388 6.388 25 C 0.018 3.982 26 H 0.273 0.727 27 H 0.381 0.619 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -10.375 -14.982 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.174 4.174 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.601 4.601 8 H 0.081 0.919 9 C 0.169 3.831 10 O -0.395 6.395 11 C -0.093 4.093 12 N -0.207 5.207 13 C -0.119 4.119 14 C 0.025 3.975 15 H 0.102 0.898 16 C -0.151 4.151 17 C -0.152 4.152 18 H 0.085 0.915 19 C -0.133 4.133 20 C -0.147 4.147 21 C -0.158 4.158 22 C -0.017 4.017 23 H 0.071 0.929 24 O -0.308 6.308 25 C -0.111 4.111 26 H 0.082 0.918 27 H 0.233 0.767 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.290 -11.174 -14.545 18.634 hybrid contribution 0.488 2.114 -0.125 2.173 sum 3.778 -9.060 -14.670 17.651 Atomic orbital electron populations 1.69528 1.07298 1.28620 1.50524 1.25846 0.95807 1.02819 0.92940 0.85472 0.78359 0.78066 0.78907 1.19577 1.20419 1.19402 1.21880 0.93733 0.91984 1.52482 0.91881 1.20283 0.85969 0.92042 0.84815 1.86007 1.47468 1.49235 1.56775 1.24068 0.98343 0.88083 0.98816 1.68502 1.25799 1.16131 1.10278 1.23085 0.95816 1.00287 0.92730 1.23691 0.95836 0.84770 0.93233 0.89814 1.22001 1.00546 1.00726 0.91863 1.22106 1.01777 0.95123 0.96158 0.91537 1.21352 1.00364 0.99044 0.92495 1.22817 1.00667 0.95625 0.95612 1.22056 1.00264 0.99696 0.93792 1.23515 0.96232 0.97998 0.83914 0.92909 1.88618 1.69286 1.43370 1.29480 1.24035 0.94876 0.95194 0.96976 0.91753 0.76663 0.94268 0.93474 0.94985 0.88012 0.89625 0.87578 0.89086 0.90741 0.90054 0.89888 0.91873 0.91524 0.90662 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.21 11.20 21.45 0.24 -51.97 16 2 C 0.03 1.41 5.40 84.66 0.46 1.87 16 3 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.56 -31.62 8.61 25.60 0.22 -31.40 16 8 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.21 11.38 1.40 -10.89 -0.02 11.36 16 10 O -0.58 -33.96 13.48 -148.98 -2.01 -35.96 16 11 C 0.04 1.87 5.60 86.34 0.48 2.35 16 12 N -0.48 -21.47 6.27 -909.90 -5.70 -27.17 16 13 C 0.01 0.33 4.59 86.30 0.40 0.73 16 14 C 0.08 2.55 3.69 31.79 0.12 2.67 16 15 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 16 C -0.11 -2.41 6.41 30.72 0.20 -2.22 16 17 C -0.13 -2.84 2.70 -11.37 -0.03 -2.87 16 18 H 0.07 1.52 8.11 -2.39 -0.02 1.50 16 19 C -0.10 -1.48 6.69 30.63 0.21 -1.28 16 20 C -0.11 -1.80 6.95 32.64 0.23 -1.57 16 21 C -0.12 -2.94 6.75 31.22 0.21 -2.73 16 22 C 0.04 1.20 3.76 31.95 0.12 1.32 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 O -0.39 -14.50 8.94 -148.65 -1.33 -15.83 16 25 C 0.02 0.81 7.36 86.41 0.64 1.45 16 26 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 27 H 0.38 22.61 6.60 -74.06 -0.49 22.12 16 28 H 0.04 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.05 2.49 7.28 -2.39 -0.02 2.48 16 30 H 0.03 1.14 7.69 -2.39 -0.02 1.12 16 31 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 32 H 0.09 1.68 7.91 -2.38 -0.02 1.66 16 33 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 3.19 7.74 -2.39 -0.02 3.17 16 41 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -65.01 319.81 -3.04 -68.05 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.51 Total: 38.06 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 3.22 Total: -20.31 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -5.46 Total: -79.14 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -3.34 Total: -51.79 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.01 -3.04 -68.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.484 kcal (2) G-P(sol) polarization free energy of solvation -65.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds