Wall clock time and date at job start Mon Mar 30 2020 01:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48498 * 109.46960 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47229 * 120.00455 * 3 2 1 6 6 H 1.48505 * 109.47009 * 240.00181 * 3 2 1 7 7 C 1.37885 * 119.99654 * 179.73205 * 2 1 3 8 8 H 1.07998 * 119.99659 * 193.87535 * 7 2 1 9 9 C 1.50701 * 119.99936 * 13.86903 * 7 2 1 10 10 O 1.42906 * 112.93624 * 53.35325 * 9 7 2 11 11 C 1.53932 * 113.73774 * 281.64214 * 9 7 2 12 12 N 1.47959 * 86.18320 * 221.92079 * 11 9 7 13 13 C 1.46900 * 110.99840 * 137.58115 * 12 11 9 14 14 C 1.52993 * 109.46975 * 90.64274 * 13 12 11 15 15 H 1.09000 * 110.33891 * 307.25650 * 14 13 12 16 16 C 1.54439 * 110.37502 * 184.99800 * 14 13 12 17 17 C 1.54272 * 104.16467 * 216.25535 * 16 14 13 18 18 H 1.09000 * 112.74702 * 238.24986 * 17 16 14 19 19 C 1.54655 * 108.82782 * 112.37024 * 17 16 14 20 20 C 1.54834 * 102.92394 * 211.69344 * 19 17 16 21 21 C 1.54203 * 104.20145 * 38.09262 * 20 19 17 22 22 C 1.53810 * 106.76872 * 336.02376 * 21 20 19 23 23 H 1.09004 * 111.85310 * 238.04641 * 22 21 20 24 24 O 1.44292 * 110.37781 * 69.63191 * 14 13 12 25 25 C 1.47959 * 90.76190 * 24.69024 * 12 11 9 26 26 H 0.97003 * 120.00130 * 185.87573 * 1 2 3 27 27 H 0.96696 * 113.99482 * 303.08006 * 10 9 7 28 28 H 1.08997 * 113.75912 * 336.24134 * 11 9 7 29 29 H 1.08999 * 113.76028 * 107.60028 * 11 9 7 30 30 H 1.09002 * 109.47123 * 210.64307 * 13 12 11 31 31 H 1.09000 * 109.47442 * 330.64285 * 13 12 11 32 32 H 1.08999 * 110.49080 * 334.92718 * 16 14 13 33 33 H 1.09007 * 110.49032 * 97.58288 * 16 14 13 34 34 H 1.08990 * 110.72450 * 330.05579 * 19 17 16 35 35 H 1.09000 * 110.72335 * 93.16017 * 19 17 16 36 36 H 1.09001 * 110.48263 * 156.76678 * 20 19 17 37 37 H 1.09000 * 110.48872 * 279.27017 * 20 19 17 38 38 H 1.08999 * 110.00396 * 95.35038 * 21 20 19 39 39 H 1.09003 * 109.99846 * 216.69670 * 21 20 19 40 40 H 1.08995 * 113.76485 * 220.99254 * 25 12 11 41 41 H 1.09001 * 113.86286 * 89.63817 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 0.0056 8 1 3.0608 -1.2067 0.2299 9 6 1.2838 -2.4816 -0.3012 10 8 0.5664 -2.4376 -1.5364 11 6 0.4583 -3.0260 0.8785 12 7 0.9794 -4.3581 0.4999 13 6 1.3681 -5.1286 1.6886 14 6 0.1745 -5.9534 2.1744 15 1 -0.6980 -5.3141 2.3092 16 6 0.5215 -6.6751 3.4950 17 6 -0.2032 -8.0325 3.3850 18 1 -0.9086 -8.2009 4.1987 19 6 0.8544 -9.1549 3.2683 20 6 0.1422 -10.2117 2.3889 21 6 -0.6401 -9.3778 1.3542 22 6 -0.8719 -7.9937 1.9837 23 1 -1.9321 -7.7481 2.0447 24 8 -0.1167 -7.0140 1.2405 25 6 2.1606 -3.7364 -0.1385 26 1 -0.4850 -0.8356 0.0860 27 1 -0.0816 -1.7218 -1.5894 28 1 0.8036 -2.6801 1.8527 29 1 -0.6185 -2.9219 0.7461 30 1 2.1920 -5.7959 1.4357 31 1 1.6829 -4.4455 2.4776 32 1 1.5982 -6.8229 3.5775 33 1 0.1463 -6.1102 4.3485 34 1 1.7546 -8.7869 2.7763 35 1 1.0929 -9.5637 4.2502 36 1 0.8732 -10.8488 1.8911 37 1 -0.5389 -10.8128 2.9911 38 1 -0.0575 -9.2780 0.4384 39 1 -1.5965 -9.8539 1.1380 40 1 2.4439 -4.1997 -1.0835 41 1 3.0049 -3.5976 0.5368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654251195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:01 Heat of formation + Delta-G solvation = -70.258564 kcal Electronic energy + Delta-G solvation = -21149.659153 eV Core-core repulsion = 18029.908833 eV Total energy + Delta-G solvation = -3119.750320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27656 -39.03621 -35.59673 -34.47066 -32.24601 -32.19429 -29.70904 -27.77384 -26.62386 -25.31159 -24.63544 -22.31237 -21.21935 -20.21653 -19.95224 -18.79413 -17.78670 -16.90198 -15.88490 -15.39485 -15.22617 -14.63682 -14.34879 -14.21416 -13.79146 -13.75126 -13.51143 -12.79688 -12.46617 -12.42730 -12.11078 -11.68762 -11.58685 -11.34275 -11.23606 -11.08625 -10.93009 -10.85494 -10.80585 -10.69321 -10.49943 -10.27245 -10.19637 -10.10445 -9.45544 -9.10723 -8.67520 -8.32766 -7.73127 -6.54249 -4.31986 3.35529 3.39699 3.57755 3.87556 4.35651 4.37170 4.40379 4.63118 4.78213 4.97283 5.00182 5.10252 5.12990 5.23821 5.37797 5.40457 5.45811 5.54250 5.56532 5.69602 5.75845 5.78163 5.83843 5.87903 5.91216 5.98631 5.99803 6.05608 6.11555 6.20028 6.26374 6.35879 6.56944 6.75622 7.07010 7.12269 7.20246 7.85620 7.90424 8.21963 8.60248 9.09518 9.38790 10.77290 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.044508 B = 0.003989 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.944601 B = 7017.973695 C = 7173.997517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.035 3.965 3 Si 1.064 2.936 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.620 4.620 8 H 0.058 0.942 9 C 0.223 3.777 10 O -0.564 6.564 11 C -0.025 4.025 12 N -0.469 5.469 13 C 0.025 3.975 14 C 0.090 3.910 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.124 4.124 18 H 0.090 0.910 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.122 4.122 22 C 0.069 3.931 23 H 0.072 0.928 24 O -0.347 6.347 25 C 0.020 3.980 26 H 0.270 0.730 27 H 0.370 0.630 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -15.665 8.262 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.171 4.171 3 Si 0.892 3.108 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.658 4.658 8 H 0.076 0.924 9 C 0.182 3.818 10 O -0.371 6.371 11 C -0.154 4.154 12 N -0.191 5.191 13 C -0.104 4.104 14 C 0.032 3.968 15 H 0.083 0.917 16 C -0.186 4.186 17 C -0.142 4.142 18 H 0.109 0.891 19 C -0.153 4.153 20 C -0.160 4.160 21 C -0.159 4.159 22 C 0.011 3.989 23 H 0.090 0.910 24 O -0.266 6.266 25 C -0.109 4.109 26 H 0.082 0.918 27 H 0.218 0.782 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.468 -15.039 7.454 16.791 hybrid contribution 0.298 -0.718 1.168 1.403 sum -0.170 -15.757 8.622 17.962 Atomic orbital electron populations 1.70885 1.06967 1.30934 1.45002 1.25915 0.96292 1.02812 0.92035 0.83631 0.75166 0.75267 0.76780 1.20596 1.21342 1.21102 1.22363 0.97491 0.92767 1.53180 0.92355 1.20020 0.88203 0.92532 0.81069 1.86244 1.56958 1.55859 1.37997 1.24932 1.00552 0.89005 1.00903 1.68545 1.19013 1.12988 1.18568 1.22697 0.96084 0.97138 0.94452 1.22841 0.97678 0.89314 0.86973 0.91694 1.23060 1.01397 0.95691 0.98463 1.23252 0.97637 0.95389 0.97965 0.89143 1.22552 0.97895 0.95289 0.99546 1.22350 0.98954 0.97527 0.97170 1.22193 1.00715 0.93445 0.99586 1.23516 0.95434 0.89758 0.90241 0.90975 1.89236 1.72958 1.30939 1.33450 1.23954 0.93075 0.95010 0.98815 0.91771 0.78152 0.91837 0.91387 0.91065 0.93003 0.90500 0.90901 0.90960 0.91679 0.91550 0.91726 0.90222 0.91334 0.90586 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 12.81 55.43 0.71 -24.70 16 2 C 0.03 0.95 5.26 -17.82 -0.09 0.86 16 3 Si 1.06 24.08 29.93 -169.99 -5.09 19.00 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.62 -17.00 8.56 -34.44 -0.29 -17.30 16 8 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 9 C 0.22 5.72 1.08 -90.84 -0.10 5.62 16 10 O -0.56 -15.20 13.45 -35.23 -0.47 -15.67 16 11 C -0.02 -0.57 6.39 -2.77 -0.02 -0.59 16 12 N -0.47 -10.15 6.16 -238.26 -1.47 -11.62 16 13 C 0.03 0.45 4.40 -3.83 -0.02 0.43 16 14 C 0.09 1.42 3.52 -25.98 -0.09 1.33 16 15 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.15 -1.78 6.15 -25.31 -0.16 -1.94 16 17 C -0.12 -1.33 4.01 -87.86 -0.35 -1.68 16 18 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.12 -1.12 6.19 -24.89 -0.15 -1.28 16 20 C -0.12 -1.11 6.83 -25.14 -0.17 -1.28 16 21 C -0.12 -1.33 6.57 -25.68 -0.17 -1.50 16 22 C 0.07 0.88 4.22 -25.08 -0.11 0.77 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 O -0.35 -5.85 10.79 -35.23 -0.38 -6.23 16 25 C 0.02 0.45 7.33 -2.77 -0.02 0.43 16 26 H 0.27 7.53 5.51 -40.82 -0.22 7.30 16 27 H 0.37 9.78 6.95 45.56 0.32 10.10 16 28 H 0.06 1.47 7.43 -51.93 -0.39 1.09 16 29 H 0.07 1.62 7.79 -51.93 -0.40 1.22 16 30 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 31 H 0.05 0.89 7.38 -51.93 -0.38 0.50 16 32 H 0.08 0.89 7.13 -51.93 -0.37 0.52 16 33 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.07 0.79 7.60 -51.93 -0.39 0.39 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.40 7.88 -51.93 -0.41 0.99 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -30.02 319.77 -9.72 -39.74 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.10 Total: 10.79 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.74 Total: -16.13 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.76 Total: -36.32 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.85 Total: -21.90 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.09 Total: 19.00 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.02 -9.72 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.517 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds