Wall clock time and date at job start Mon Mar 30 2020 01:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48498 * 109.46960 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47229 * 120.00455 * 3 2 1 6 6 H 1.48505 * 109.47009 * 240.00181 * 3 2 1 7 7 C 1.37885 * 119.99654 * 179.73205 * 2 1 3 8 8 H 1.07998 * 119.99659 * 193.87535 * 7 2 1 9 9 C 1.50701 * 119.99936 * 13.86903 * 7 2 1 10 10 O 1.42906 * 112.93624 * 53.35325 * 9 7 2 11 11 C 1.53932 * 113.73774 * 281.64214 * 9 7 2 12 12 N 1.47959 * 86.18320 * 221.92079 * 11 9 7 13 13 C 1.46900 * 110.99840 * 137.58115 * 12 11 9 14 14 C 1.52993 * 109.46975 * 90.64274 * 13 12 11 15 15 H 1.09000 * 110.33891 * 307.25650 * 14 13 12 16 16 C 1.54439 * 110.37502 * 184.99800 * 14 13 12 17 17 C 1.54272 * 104.16467 * 216.25535 * 16 14 13 18 18 H 1.09000 * 112.74702 * 238.24986 * 17 16 14 19 19 C 1.54655 * 108.82782 * 112.37024 * 17 16 14 20 20 C 1.54834 * 102.92394 * 211.69344 * 19 17 16 21 21 C 1.54203 * 104.20145 * 38.09262 * 20 19 17 22 22 C 1.53810 * 106.76872 * 336.02376 * 21 20 19 23 23 H 1.09004 * 111.85310 * 238.04641 * 22 21 20 24 24 O 1.44292 * 110.37781 * 69.63191 * 14 13 12 25 25 C 1.47959 * 90.76190 * 24.69024 * 12 11 9 26 26 H 0.97003 * 120.00130 * 185.87573 * 1 2 3 27 27 H 0.96696 * 113.99482 * 303.08006 * 10 9 7 28 28 H 1.08997 * 113.75912 * 336.24134 * 11 9 7 29 29 H 1.08999 * 113.76028 * 107.60028 * 11 9 7 30 30 H 1.09002 * 109.47123 * 210.64307 * 13 12 11 31 31 H 1.09000 * 109.47442 * 330.64285 * 13 12 11 32 32 H 1.08999 * 110.49080 * 334.92718 * 16 14 13 33 33 H 1.09007 * 110.49032 * 97.58288 * 16 14 13 34 34 H 1.08990 * 110.72450 * 330.05579 * 19 17 16 35 35 H 1.09000 * 110.72335 * 93.16017 * 19 17 16 36 36 H 1.09001 * 110.48263 * 156.76678 * 20 19 17 37 37 H 1.09000 * 110.48872 * 279.27017 * 20 19 17 38 38 H 1.08999 * 110.00396 * 95.35038 * 21 20 19 39 39 H 1.09003 * 109.99846 * 216.69670 * 21 20 19 40 40 H 1.08995 * 113.76485 * 220.99254 * 25 12 11 41 41 H 1.09001 * 113.86286 * 89.63817 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 0.0056 8 1 3.0608 -1.2067 0.2299 9 6 1.2838 -2.4816 -0.3012 10 8 0.5664 -2.4376 -1.5364 11 6 0.4583 -3.0260 0.8785 12 7 0.9794 -4.3581 0.4999 13 6 1.3681 -5.1286 1.6886 14 6 0.1745 -5.9534 2.1744 15 1 -0.6980 -5.3141 2.3092 16 6 0.5215 -6.6751 3.4950 17 6 -0.2032 -8.0325 3.3850 18 1 -0.9086 -8.2009 4.1987 19 6 0.8544 -9.1549 3.2683 20 6 0.1422 -10.2117 2.3889 21 6 -0.6401 -9.3778 1.3542 22 6 -0.8719 -7.9937 1.9837 23 1 -1.9321 -7.7481 2.0447 24 8 -0.1167 -7.0140 1.2405 25 6 2.1606 -3.7364 -0.1385 26 1 -0.4850 -0.8356 0.0860 27 1 -0.0816 -1.7218 -1.5894 28 1 0.8036 -2.6801 1.8527 29 1 -0.6185 -2.9219 0.7461 30 1 2.1920 -5.7959 1.4357 31 1 1.6829 -4.4455 2.4776 32 1 1.5982 -6.8229 3.5775 33 1 0.1463 -6.1102 4.3485 34 1 1.7546 -8.7869 2.7763 35 1 1.0929 -9.5637 4.2502 36 1 0.8732 -10.8488 1.8911 37 1 -0.5389 -10.8128 2.9911 38 1 -0.0575 -9.2780 0.4384 39 1 -1.5965 -9.8539 1.1380 40 1 2.4439 -4.1997 -1.0835 41 1 3.0049 -3.5976 0.5368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654251195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:01 Heat of formation + Delta-G solvation = -92.465134 kcal Electronic energy + Delta-G solvation = -21150.622102 eV Core-core repulsion = 18029.908833 eV Total energy + Delta-G solvation = -3120.713269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45929 -40.71230 -36.95426 -36.06198 -34.30490 -33.39397 -31.04980 -28.66180 -28.23989 -27.14608 -26.25453 -23.84378 -22.30871 -21.25736 -20.97649 -20.64924 -19.80305 -17.93277 -17.18946 -17.06505 -16.59848 -16.26263 -16.05336 -15.60673 -15.24972 -15.04477 -14.67212 -14.33033 -13.98682 -13.89835 -13.46387 -13.27444 -13.11154 -12.79237 -12.59272 -12.50336 -12.26516 -12.08638 -11.94028 -11.91873 -11.72681 -11.68917 -11.52621 -11.33993 -11.08898 -10.72362 -10.60038 -10.21980 -9.60820 -8.68932 -6.48812 1.54919 1.60322 1.81875 2.52175 2.78781 2.92427 2.99250 3.42826 3.51184 3.69252 3.82820 3.90610 4.04505 4.08216 4.16819 4.20077 4.28258 4.31692 4.42969 4.45656 4.53464 4.61370 4.64529 4.69466 4.73747 4.78725 4.83804 4.93903 5.03327 5.05760 5.10772 5.17104 5.18801 5.26126 5.37916 5.47516 5.79033 6.04433 6.05574 6.20847 6.44075 6.99199 7.29224 8.62410 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.044508 B = 0.003989 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.944601 B = 7017.973695 C = 7173.997517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 1.112 2.888 4 H -0.282 1.282 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.639 4.639 8 H 0.055 0.945 9 C 0.197 3.803 10 O -0.575 6.575 11 C -0.009 4.009 12 N -0.477 5.477 13 C 0.026 3.974 14 C 0.088 3.912 15 H 0.048 0.952 16 C -0.140 4.140 17 C -0.116 4.116 18 H 0.113 0.887 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.122 4.122 22 C 0.055 3.945 23 H 0.073 0.927 24 O -0.380 6.380 25 C 0.027 3.973 26 H 0.262 0.738 27 H 0.367 0.633 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 -16.769 9.946 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.933 3.067 4 H -0.207 1.207 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.676 4.676 8 H 0.074 0.926 9 C 0.157 3.843 10 O -0.382 6.382 11 C -0.138 4.138 12 N -0.199 5.199 13 C -0.103 4.103 14 C 0.030 3.970 15 H 0.066 0.934 16 C -0.178 4.178 17 C -0.134 4.134 18 H 0.131 0.869 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.003 4.003 23 H 0.091 0.909 24 O -0.300 6.300 25 C -0.102 4.102 26 H 0.074 0.926 27 H 0.215 0.785 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.183 -16.179 9.147 18.586 hybrid contribution 0.063 -0.433 0.601 0.743 sum 0.246 -16.611 9.748 19.262 Atomic orbital electron populations 1.70976 1.07692 1.30569 1.46330 1.27221 0.96420 1.06075 0.91065 0.83006 0.74332 0.71507 0.77812 1.20714 1.19405 1.20117 1.22631 0.97526 0.93964 1.53529 0.92643 1.20362 0.89396 0.93336 0.81253 1.86228 1.57052 1.55772 1.39120 1.24638 0.99387 0.89957 0.99832 1.68491 1.18651 1.12188 1.20562 1.22771 0.97393 0.97063 0.93047 1.22804 0.96101 0.89299 0.88794 0.93426 1.23028 1.02104 0.96153 0.96565 1.23290 0.97998 0.94934 0.97210 0.86851 1.22557 0.96928 0.95034 1.00652 1.22351 0.99129 0.97266 0.96667 1.22218 1.01503 0.93015 0.99243 1.23815 0.95307 0.89635 0.91529 0.90939 1.89201 1.73732 1.31894 1.35136 1.23906 0.93464 0.93554 0.99230 0.92641 0.78473 0.91953 0.92672 0.90284 0.92193 0.89838 0.89412 0.92491 0.89500 0.91002 0.89694 0.92380 0.89910 0.90862 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.31 12.81 21.45 0.27 -52.04 16 2 C -0.01 -0.38 5.26 84.66 0.45 0.07 16 3 Si 1.11 47.98 29.93 68.60 2.05 50.03 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.64 -35.16 8.56 25.60 0.22 -34.94 16 8 H 0.06 3.01 7.85 -2.91 -0.02 2.98 16 9 C 0.20 10.25 1.08 -10.89 -0.01 10.24 16 10 O -0.58 -31.74 13.45 -148.98 -2.00 -33.74 16 11 C -0.01 -0.41 6.39 86.40 0.55 0.15 16 12 N -0.48 -20.75 6.16 -910.91 -5.61 -26.36 16 13 C 0.03 0.90 4.40 86.30 0.38 1.28 16 14 C 0.09 2.74 3.52 31.08 0.11 2.85 16 15 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 16 C -0.14 -3.10 6.15 31.51 0.19 -2.90 16 17 C -0.12 -2.20 4.01 -9.00 -0.04 -2.23 16 18 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 19 C -0.11 -1.90 6.19 31.78 0.20 -1.70 16 20 C -0.12 -1.80 6.83 31.63 0.22 -1.59 16 21 C -0.12 -2.51 6.57 31.27 0.21 -2.31 16 22 C 0.05 1.33 4.22 31.66 0.13 1.47 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 O -0.38 -12.79 10.79 -148.98 -1.61 -14.40 16 25 C 0.03 1.23 7.33 86.41 0.63 1.86 16 26 H 0.26 14.98 5.51 -92.71 -0.51 14.47 16 27 H 0.37 20.09 6.95 -74.06 -0.51 19.58 16 28 H 0.06 2.93 7.43 -2.39 -0.02 2.91 16 29 H 0.05 2.72 7.79 -2.39 -0.02 2.70 16 30 H 0.08 2.62 8.08 -2.39 -0.02 2.60 16 31 H 0.06 1.99 7.38 -2.39 -0.02 1.97 16 32 H 0.08 1.74 7.13 -2.39 -0.02 1.72 16 33 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 1.13 7.60 -2.39 -0.02 1.11 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.44 7.92 -2.39 -0.02 1.42 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.08 3.35 7.88 -2.39 -0.02 3.33 16 Total: -1.00 -64.36 319.77 -2.91 -67.27 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: 0.75 Total: 36.99 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 3.24 Total: -27.76 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -5.34 Total: -78.39 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -3.61 Total: -48.14 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.05 Total: 50.03 kcal Total: -64.36 -2.91 -67.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.197 kcal (2) G-P(sol) polarization free energy of solvation -64.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds