Wall clock time and date at job start Mon Mar 30 2020 00:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47522 * 179.97438 * 9 8 6 11 11 N 1.33241 * 125.52802 * 269.69582 * 10 9 8 12 12 C 1.30838 * 109.82649 * 179.84986 * 11 10 9 13 13 N 1.34422 * 108.07675 * 0.40403 * 12 11 10 14 14 H 0.97003 * 126.82472 * 179.78602 * 13 12 11 15 15 N 1.30717 * 125.52371 * 89.99604 * 10 9 8 16 16 N 1.46494 * 109.47389 * 120.00433 * 2 1 3 17 17 C 1.36939 * 119.99807 * 275.00196 * 16 2 1 18 18 H 1.07997 * 120.00301 * 359.97438 * 17 16 2 19 19 C 1.38816 * 119.99803 * 180.02562 * 17 16 2 20 20 N 1.31619 * 119.99848 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00057 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47206 * 90.00373 * 21 19 17 23 23 H 1.48502 * 109.47176 * 210.00228 * 21 19 17 24 24 H 1.48504 * 109.47248 * 330.00069 * 21 19 17 25 25 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 26 26 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 27 27 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 29 29 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 30 30 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 32 32 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 33 33 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 34 34 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 35 35 H 1.08001 * 125.95654 * 180.12359 * 12 11 10 36 36 H 0.97000 * 120.00254 * 94.99110 * 16 2 1 37 37 H 0.97007 * 119.99837 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 6 7.6886 -2.3454 -3.3310 11 7 8.5447 -1.4481 -3.8180 12 6 9.7730 -1.8421 -3.5989 13 7 9.7243 -3.0257 -2.9634 14 1 10.4791 -3.5618 -2.6741 15 7 8.3632 -3.3315 -2.8007 16 7 2.0184 -0.6907 1.1960 17 6 2.1491 -0.0076 2.3757 18 1 1.8926 1.0404 2.4242 19 6 2.6124 -0.6619 3.5089 20 7 2.7386 -0.0052 4.6426 21 14 3.0568 -2.4743 3.4249 22 1 4.4893 -2.6164 3.0605 23 1 2.8178 -3.1045 4.7482 24 1 2.2164 -3.1430 2.3992 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7515 -0.1582 -2.1370 29 1 1.6053 -1.7197 -1.2952 30 1 3.9824 -0.4622 -0.4320 31 1 6.1067 -0.5264 -2.0889 32 1 5.9679 -2.0904 -1.2506 33 1 5.7551 -3.2433 -3.4353 34 1 5.8940 -1.6796 -4.2741 35 1 10.6695 -1.3114 -3.8835 36 1 2.2490 -1.6318 1.1525 37 1 3.0620 -0.4626 5.4346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662189566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:16 Heat of formation + Delta-G solvation = 51.417738 kcal Electronic energy + Delta-G solvation = -19637.156678 eV Core-core repulsion = 16451.435047 eV Total energy + Delta-G solvation = -3185.721632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34581 -39.49682 -36.56024 -34.36382 -33.60551 -32.24487 -31.89089 -30.75945 -29.37504 -26.62663 -24.53099 -23.27212 -22.93746 -20.47951 -20.27602 -19.81589 -18.59879 -17.86993 -16.74592 -15.92102 -15.85517 -15.44482 -15.31784 -14.83652 -14.17956 -13.84339 -13.40827 -13.01602 -12.79934 -12.53057 -12.38479 -12.32475 -12.19057 -11.99829 -11.61583 -11.20041 -10.96144 -10.81916 -10.40977 -10.36774 -10.28520 -10.09500 -9.98426 -9.64708 -9.59106 -9.02281 -8.72981 -7.36681 -5.83370 -3.20131 1.34041 2.39276 2.61282 2.86775 3.32500 3.37665 3.41586 3.47438 3.93969 4.43969 4.53283 4.68651 4.89225 5.12511 5.16987 5.23013 5.36342 5.47599 5.55510 5.78832 5.84021 5.89980 5.97620 6.00262 6.10066 6.19784 6.22724 6.39551 6.68781 6.73333 6.73763 6.96183 7.82180 7.83306 7.92517 8.35272 8.47633 9.13382 9.85689 10.04986 11.34621 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.004323 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.671848 B = 6476.089768 C = 7527.812645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 H 0.063 0.937 4 C 0.112 3.888 5 N -0.717 5.717 6 C 0.514 3.486 7 O -0.553 6.553 8 C -0.135 4.135 9 C -0.009 4.009 10 C 0.233 3.767 11 N -0.540 5.540 12 C 0.260 3.740 13 N -0.487 5.487 14 H 0.441 0.559 15 N -0.312 5.312 16 N -0.748 5.748 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.881 3.119 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.410 0.590 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.223 0.777 36 H 0.362 0.638 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.560 -3.400 -16.184 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.081 0.919 4 C -0.013 4.013 5 N -0.369 5.369 6 C 0.300 3.700 7 O -0.432 6.432 8 C -0.177 4.177 9 C -0.050 4.050 10 C -0.050 4.050 11 N -0.268 5.268 12 C -0.040 4.040 13 N -0.205 5.205 14 H 0.287 0.713 15 N -0.141 5.141 16 N -0.392 5.392 17 C -0.376 4.376 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.579 5.579 21 Si 0.711 3.289 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.247 0.753 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.239 0.761 36 H 0.195 0.805 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.655 -3.832 -16.512 20.571 hybrid contribution 1.402 -1.384 0.772 2.116 sum 13.057 -5.215 -15.740 21.105 Atomic orbital electron populations 1.22333 0.97822 1.01286 1.00908 1.20488 0.92844 0.96057 0.85128 0.91943 1.21744 0.79544 1.01125 0.98884 1.46036 1.08307 1.59094 1.23425 1.20433 0.89562 0.77686 0.82351 1.90675 1.70490 1.48349 1.33670 1.21569 0.92863 1.03521 0.99697 1.19655 0.82714 1.03397 0.99201 1.24366 0.98090 0.88101 0.94435 1.70457 0.99028 1.31022 1.26307 1.26137 0.98355 0.86320 0.93152 1.48157 1.07540 1.18688 1.46123 0.71342 1.78077 0.86586 1.23864 1.25566 1.42855 1.79754 1.09487 1.07152 1.19064 1.37265 0.95543 0.85753 0.89066 1.24657 1.01321 0.97298 0.95522 1.69699 1.52331 1.35592 1.00274 0.86615 0.78456 0.86881 0.76945 1.21068 1.21730 1.20304 0.91876 0.93826 0.93329 0.91360 0.91878 0.75329 0.88263 0.88563 0.88667 0.88142 0.76117 0.80497 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.16 2.94 3.05 -67.93 -0.21 2.73 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 C 0.11 1.78 5.23 -4.04 -0.02 1.76 16 5 N -0.72 -11.14 5.39 -60.29 -0.32 -11.46 16 6 C 0.51 7.83 7.83 -10.99 -0.09 7.75 16 7 O -0.55 -9.92 15.98 5.55 0.09 -9.83 16 8 C -0.14 -1.68 5.68 -27.88 -0.16 -1.84 16 9 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 10 C 0.23 2.91 7.39 -156.85 -1.16 1.75 16 11 N -0.54 -6.23 11.19 -11.97 -0.13 -6.36 16 12 C 0.26 1.92 13.13 -90.65 -1.19 0.73 16 13 N -0.49 -3.82 7.45 29.53 0.22 -3.60 16 14 H 0.44 1.75 8.96 -182.33 -1.63 0.12 16 15 N -0.31 -3.83 12.80 32.42 0.41 -3.41 16 16 N -0.75 -16.52 4.37 -53.43 -0.23 -16.76 16 17 C -0.25 -6.57 10.41 -15.06 -0.16 -6.73 16 18 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -28.43 13.97 55.49 0.78 -27.66 16 21 Si 0.88 21.60 27.73 -169.99 -4.71 16.89 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.41 6.38 8.14 -40.82 -0.33 6.05 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.22 0.45 8.06 -52.49 -0.42 0.02 16 36 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -35.09 320.91 -8.37 -43.46 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.43 Total: 10.23 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.87 Total: 3.67 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: 0.72 Total: -69.25 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.09 -8.37 -43.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662189566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.877 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds