Wall clock time and date at job start Mon Mar 30 2020 00:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47522 * 179.97438 * 9 8 6 11 11 N 1.33241 * 125.52802 * 269.69582 * 10 9 8 12 12 C 1.30838 * 109.82649 * 179.84986 * 11 10 9 13 13 N 1.34422 * 108.07675 * 0.40403 * 12 11 10 14 14 H 0.97003 * 126.82472 * 179.78602 * 13 12 11 15 15 N 1.30717 * 125.52371 * 89.99604 * 10 9 8 16 16 N 1.46494 * 109.47389 * 120.00433 * 2 1 3 17 17 C 1.36939 * 119.99807 * 275.00196 * 16 2 1 18 18 H 1.07997 * 120.00301 * 359.97438 * 17 16 2 19 19 C 1.38816 * 119.99803 * 180.02562 * 17 16 2 20 20 N 1.31619 * 119.99848 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00057 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47206 * 90.00373 * 21 19 17 23 23 H 1.48502 * 109.47176 * 210.00228 * 21 19 17 24 24 H 1.48504 * 109.47248 * 330.00069 * 21 19 17 25 25 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 26 26 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 27 27 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 29 29 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 30 30 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 32 32 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 33 33 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 34 34 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 35 35 H 1.08001 * 125.95654 * 180.12359 * 12 11 10 36 36 H 0.97000 * 120.00254 * 94.99110 * 16 2 1 37 37 H 0.97007 * 119.99837 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 6 7.6886 -2.3454 -3.3310 11 7 8.5447 -1.4481 -3.8180 12 6 9.7730 -1.8421 -3.5989 13 7 9.7243 -3.0257 -2.9634 14 1 10.4791 -3.5618 -2.6741 15 7 8.3632 -3.3315 -2.8007 16 7 2.0184 -0.6907 1.1960 17 6 2.1491 -0.0076 2.3757 18 1 1.8926 1.0404 2.4242 19 6 2.6124 -0.6619 3.5089 20 7 2.7386 -0.0052 4.6426 21 14 3.0568 -2.4743 3.4249 22 1 4.4893 -2.6164 3.0605 23 1 2.8178 -3.1045 4.7482 24 1 2.2164 -3.1430 2.3992 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7515 -0.1582 -2.1370 29 1 1.6053 -1.7197 -1.2952 30 1 3.9824 -0.4622 -0.4320 31 1 6.1067 -0.5264 -2.0889 32 1 5.9679 -2.0904 -1.2506 33 1 5.7551 -3.2433 -3.4353 34 1 5.8940 -1.6796 -4.2741 35 1 10.6695 -1.3114 -3.8835 36 1 2.2490 -1.6318 1.1525 37 1 3.0620 -0.4626 5.4346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662189566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:16 Heat of formation + Delta-G solvation = 25.474076 kcal Electronic energy + Delta-G solvation = -19638.281680 eV Core-core repulsion = 16451.435047 eV Total energy + Delta-G solvation = -3186.846633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.06841 -40.75036 -38.09732 -35.33426 -35.14259 -33.74059 -32.97103 -31.69712 -31.08061 -27.81022 -25.81828 -25.03388 -23.61999 -21.79044 -21.44305 -20.95072 -19.79799 -19.25006 -17.97993 -17.16942 -17.03314 -16.63515 -16.34908 -15.97707 -15.75676 -15.17338 -14.69678 -14.60992 -14.18838 -13.96192 -13.74374 -13.33647 -13.25959 -13.18643 -13.10156 -12.85897 -12.47403 -12.17797 -12.11847 -11.79610 -11.68440 -11.13386 -11.05717 -11.03764 -10.92659 -10.63806 -10.01399 -9.33827 -8.00276 -5.33556 0.65190 1.38910 1.40499 1.47267 1.65863 1.79641 1.86541 2.33535 2.48706 3.21525 3.31914 3.57934 3.67710 3.82679 3.95259 4.10199 4.20089 4.31363 4.37730 4.57125 4.62732 4.75055 4.87812 4.91119 4.98054 5.02687 5.25134 5.25718 5.36000 5.42413 5.60065 5.81632 6.23312 6.27207 6.59035 7.09338 7.10824 7.24939 7.84512 8.03168 9.21091 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.004323 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.671848 B = 6476.089768 C = 7527.812645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.061 0.939 4 C 0.120 3.880 5 N -0.718 5.718 6 C 0.516 3.484 7 O -0.580 6.580 8 C -0.124 4.124 9 C -0.004 4.004 10 C 0.220 3.780 11 N -0.577 5.577 12 C 0.277 3.723 13 N -0.477 5.477 14 H 0.458 0.542 15 N -0.347 5.347 16 N -0.749 5.749 17 C -0.222 4.222 18 H 0.063 0.937 19 C -0.057 4.057 20 N -0.982 5.982 21 Si 0.945 3.055 22 H -0.276 1.276 23 H -0.302 1.302 24 H -0.260 1.260 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.411 0.589 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.275 0.725 36 H 0.364 0.636 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.860 -4.055 -17.853 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.079 0.921 4 C -0.004 4.004 5 N -0.369 5.369 6 C 0.303 3.697 7 O -0.461 6.461 8 C -0.165 4.165 9 C -0.044 4.044 10 C -0.062 4.062 11 N -0.306 5.306 12 C -0.021 4.021 13 N -0.196 5.196 14 H 0.307 0.693 15 N -0.178 5.178 16 N -0.393 5.393 17 C -0.353 4.353 18 H 0.081 0.919 19 C -0.249 4.249 20 N -0.633 5.633 21 Si 0.774 3.226 22 H -0.202 1.202 23 H -0.229 1.229 24 H -0.185 1.185 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.247 0.753 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.290 0.710 36 H 0.197 0.803 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.966 -4.500 -18.232 22.821 hybrid contribution 1.033 -1.086 1.203 1.922 sum 13.999 -5.585 -17.029 22.741 Atomic orbital electron populations 1.22224 0.96412 1.01604 1.01478 1.20665 0.93731 0.95812 0.84328 0.92110 1.21623 0.79844 1.00804 0.98144 1.46064 1.08181 1.59141 1.23558 1.20826 0.90533 0.76735 0.81581 1.90664 1.71271 1.49465 1.34657 1.21497 0.90699 1.04338 0.99949 1.19518 0.83336 1.02712 0.98845 1.24277 0.98115 0.88686 0.95157 1.70430 1.00494 1.31879 1.27823 1.27105 0.98698 0.85565 0.90764 1.48092 1.06652 1.19154 1.45739 0.69347 1.77964 0.88654 1.24580 1.26571 1.42833 1.79964 1.09480 1.07009 1.19007 1.34638 0.94483 0.87159 0.91914 1.25348 1.02618 1.01604 0.95282 1.69866 1.54801 1.37476 1.01154 0.85564 0.78701 0.81733 0.76637 1.20200 1.22882 1.18483 0.94068 0.90509 0.93138 0.89669 0.92248 0.75269 0.86975 0.88225 0.89567 0.88582 0.71010 0.80321 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 9.49 71.98 0.68 -4.25 16 2 C 0.16 5.55 3.05 44.99 0.14 5.69 16 3 H 0.06 2.12 8.08 -2.39 -0.02 2.11 16 4 C 0.12 3.59 5.23 86.38 0.45 4.04 16 5 N -0.72 -21.10 5.39 -463.05 -2.49 -23.59 16 6 C 0.52 15.04 7.83 87.66 0.69 15.73 16 7 O -0.58 -20.17 15.98 -3.04 -0.05 -20.21 16 8 C -0.12 -2.94 5.68 29.85 0.17 -2.77 16 9 C 0.00 -0.09 5.13 29.85 0.15 0.06 16 10 C 0.22 5.30 7.39 138.63 1.03 6.32 16 11 N -0.58 -12.30 11.19 -191.80 -2.15 -14.45 16 12 C 0.28 3.27 13.13 180.36 2.37 5.64 16 13 N -0.48 -6.38 7.45 -60.49 -0.45 -6.83 16 14 H 0.46 2.47 8.96 -213.09 -1.91 0.56 16 15 N -0.35 -8.12 12.80 -51.33 -0.66 -8.78 16 16 N -0.75 -32.15 4.37 -322.95 -1.41 -33.56 16 17 C -0.22 -11.84 10.41 84.03 0.87 -10.97 16 18 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 19 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 20 N -0.98 -61.20 13.97 21.65 0.30 -60.90 16 21 Si 0.95 44.49 27.73 68.60 1.90 46.40 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 24 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 25 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.41 12.13 8.14 -92.71 -0.75 11.38 16 31 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 2.18 8.10 -2.39 -0.02 2.16 16 34 H 0.10 2.34 8.10 -2.38 -0.02 2.32 16 35 H 0.27 -0.16 8.06 -2.91 -0.02 -0.19 16 36 H 0.36 15.50 5.66 -92.71 -0.52 14.98 16 37 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -76.35 320.91 -0.12 -76.47 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -2.14 Total: 28.70 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.02 Total: 16.75 kcal Atomic # 7 Polarization: -141.24 SS G_CDS: -6.86 Total: -148.10 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.05 Total: -20.21 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.40 kcal Total: -76.35 -0.12 -76.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662189566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.949 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds