Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 N 1.33245 * 125.52301 * 269.69858 * 10 9 8 12 12 C 1.30838 * 109.82273 * 179.85311 * 11 10 9 13 13 N 1.34433 * 108.07711 * 0.39936 * 12 11 10 14 14 H 0.96999 * 126.81808 * 179.79359 * 13 12 11 15 15 N 1.30710 * 125.52863 * 89.99872 * 10 9 8 16 16 N 1.46494 * 109.47171 * 240.00392 * 2 1 3 17 17 C 1.36934 * 120.00488 * 84.99750 * 16 2 1 18 18 H 1.08003 * 119.99785 * 359.97438 * 17 16 2 19 19 C 1.38817 * 120.00391 * 179.97438 * 17 16 2 20 20 N 1.31621 * 119.99622 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47024 * 90.00240 * 21 19 17 23 23 H 1.48499 * 109.46708 * 210.00099 * 21 19 17 24 24 H 1.48487 * 109.47232 * 330.00094 * 21 19 17 25 25 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 26 26 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 27 27 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 29 29 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 31 31 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 32 32 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 33 33 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 34 34 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 35 35 H 1.08004 * 125.95780 * 180.12393 * 12 11 10 36 36 H 0.97009 * 119.99912 * 264.99313 * 16 2 1 37 37 H 0.97003 * 119.99413 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 6 6.1864 -2.2430 3.3877 10 6 7.6889 -2.3450 3.3307 11 7 8.3767 -3.3528 2.7951 12 6 9.6599 -3.1247 2.9100 13 7 9.8197 -1.9484 3.5409 14 1 10.6598 -1.5205 3.7689 15 7 8.5287 -1.4620 3.8035 16 7 2.0184 -0.6905 -1.1962 17 6 2.1491 -0.0074 -2.3757 18 1 1.8919 1.0404 -2.4243 19 6 2.6124 -0.6616 -3.5091 20 7 2.9254 -1.9387 -3.4499 21 14 2.7901 0.2702 -5.1183 22 1 4.1519 0.8562 -5.2032 23 1 2.5804 -0.6616 -6.2555 24 1 1.7793 1.3564 -5.1756 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -1.7198 1.2952 29 1 1.7517 -0.1583 2.1369 30 1 3.9825 -0.4620 0.4319 31 1 5.9681 -2.0901 1.2503 32 1 6.1069 -0.5261 2.0886 33 1 5.8943 -1.6794 4.2738 34 1 5.7555 -3.2432 3.4348 35 1 10.4525 -3.7710 2.5628 36 1 2.2492 -1.6317 -1.1526 37 1 3.2495 -2.3957 -4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662189567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = 47.573640 kcal Electronic energy + Delta-G solvation = -19543.885418 eV Core-core repulsion = 16357.997094 eV Total energy + Delta-G solvation = -3185.888324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.27773 -39.34579 -36.35157 -34.27008 -33.47801 -32.17549 -31.81127 -30.65464 -28.71949 -26.51162 -24.45545 -23.52326 -22.88060 -20.38849 -20.16260 -19.66483 -18.53588 -17.42199 -16.64031 -15.78925 -15.74980 -15.40285 -15.15248 -14.68821 -14.05360 -13.86422 -13.16047 -13.08830 -12.83923 -12.32731 -12.20025 -12.15122 -12.03401 -11.87027 -11.35116 -11.08839 -10.87543 -10.75129 -10.33930 -10.29740 -10.20435 -10.01050 -9.90712 -9.71382 -9.46324 -8.98159 -8.56420 -7.03740 -5.81151 -3.11390 1.39907 2.44993 2.69443 3.01342 3.39937 3.46047 3.47528 3.60766 4.03338 4.51272 4.54915 4.76529 5.00628 5.23979 5.30165 5.48348 5.51158 5.60021 5.66803 5.93470 5.97819 5.99237 6.05819 6.11982 6.20875 6.28469 6.36233 6.58432 6.77360 6.79242 6.88869 7.07239 7.66067 7.89706 7.99576 8.36407 8.62879 9.48241 10.03531 10.39240 11.40765 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.003995 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.371330 B = 7006.394081 C = 8226.371605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.712 5.712 6 C 0.514 3.486 7 O -0.557 6.557 8 C -0.134 4.134 9 C -0.010 4.010 10 C 0.235 3.765 11 N -0.538 5.538 12 C 0.260 3.740 13 N -0.489 5.489 14 H 0.440 0.560 15 N -0.315 5.315 16 N -0.724 5.724 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.411 0.589 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.222 0.778 36 H 0.386 0.614 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 0.567 12.944 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.363 5.363 6 C 0.300 3.700 7 O -0.436 6.436 8 C -0.175 4.175 9 C -0.050 4.050 10 C -0.048 4.048 11 N -0.266 5.266 12 C -0.039 4.039 13 N -0.207 5.207 14 H 0.286 0.714 15 N -0.144 5.144 16 N -0.367 5.367 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.247 0.753 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.239 0.761 36 H 0.220 0.780 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.273 0.711 13.656 17.722 hybrid contribution 1.280 0.431 -1.416 1.956 sum 12.553 1.142 12.241 17.570 Atomic orbital electron populations 1.22362 0.98353 1.01278 1.00327 1.20510 0.92663 0.95722 0.86216 0.92934 1.21679 0.79657 1.01104 0.98533 1.45983 1.08223 1.58859 1.23252 1.20399 0.89523 0.77682 0.82379 1.90665 1.70534 1.48501 1.33882 1.21548 0.92950 1.03014 0.99991 1.19663 0.82700 1.03782 0.98839 1.24385 0.98033 0.87956 0.94394 1.70485 1.02454 1.28384 1.25260 1.26154 0.96049 0.87994 0.93748 1.48149 1.08465 1.18035 1.46010 0.71438 1.78032 0.87757 1.22812 1.25804 1.42478 1.78069 1.10856 1.05250 1.19224 1.36948 0.93884 0.87381 0.91145 1.24742 1.02027 0.95897 0.97990 1.69668 1.50482 1.08594 1.28984 0.86217 0.77736 0.78604 0.83762 1.21755 1.21811 1.20797 0.94198 0.92377 0.93192 0.91822 0.91883 0.75294 0.88083 0.88856 0.88760 0.88109 0.76135 0.78037 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.16 3.00 3.05 -67.93 -0.21 2.79 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C 0.11 1.98 5.23 -4.04 -0.02 1.95 16 5 N -0.71 -11.91 5.39 -60.30 -0.32 -12.23 16 6 C 0.51 8.40 7.83 -10.98 -0.09 8.32 16 7 O -0.56 -10.57 15.98 5.55 0.09 -10.49 16 8 C -0.13 -1.79 5.68 -27.89 -0.16 -1.95 16 9 C -0.01 -0.12 5.13 -27.89 -0.14 -0.27 16 10 C 0.23 3.08 7.39 -156.85 -1.16 1.92 16 11 N -0.54 -6.75 11.19 -11.97 -0.13 -6.88 16 12 C 0.26 2.10 13.13 -90.65 -1.19 0.91 16 13 N -0.49 -3.96 7.45 29.53 0.22 -3.74 16 14 H 0.44 1.78 8.96 -182.34 -1.63 0.15 16 15 N -0.31 -3.89 12.80 32.42 0.41 -3.48 16 16 N -0.72 -17.04 4.56 -53.43 -0.24 -17.29 16 17 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 18 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 21 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.41 6.97 8.14 -40.82 -0.33 6.63 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.10 1.37 8.10 -51.92 -0.42 0.95 16 35 H 0.22 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.39 9.85 7.80 -40.82 -0.32 9.54 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -34.00 324.03 -8.73 -42.72 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.47 Total: 11.96 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.86 Total: 4.27 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: 0.66 Total: -70.06 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.00 -8.73 -42.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662189567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.297 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds