Wall clock time and date at job start Mon Mar 30 2020 00:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 N 1.33245 * 125.52301 * 269.69858 * 10 9 8 12 12 C 1.30838 * 109.82273 * 179.85311 * 11 10 9 13 13 N 1.34433 * 108.07711 * 0.39936 * 12 11 10 14 14 H 0.96999 * 126.81808 * 179.79359 * 13 12 11 15 15 N 1.30710 * 125.52863 * 89.99872 * 10 9 8 16 16 N 1.46494 * 109.47171 * 240.00392 * 2 1 3 17 17 C 1.36934 * 120.00488 * 84.99750 * 16 2 1 18 18 H 1.08003 * 119.99785 * 359.97438 * 17 16 2 19 19 C 1.38817 * 120.00391 * 179.97438 * 17 16 2 20 20 N 1.31621 * 119.99622 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47024 * 90.00240 * 21 19 17 23 23 H 1.48499 * 109.46708 * 210.00099 * 21 19 17 24 24 H 1.48487 * 109.47232 * 330.00094 * 21 19 17 25 25 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 26 26 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 27 27 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 29 29 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 31 31 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 32 32 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 33 33 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 34 34 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 35 35 H 1.08004 * 125.95780 * 180.12393 * 12 11 10 36 36 H 0.97009 * 119.99912 * 264.99313 * 16 2 1 37 37 H 0.97003 * 119.99413 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 6 6.1864 -2.2430 3.3877 10 6 7.6889 -2.3450 3.3307 11 7 8.3767 -3.3528 2.7951 12 6 9.6599 -3.1247 2.9100 13 7 9.8197 -1.9484 3.5409 14 1 10.6598 -1.5205 3.7689 15 7 8.5287 -1.4620 3.8035 16 7 2.0184 -0.6905 -1.1962 17 6 2.1491 -0.0074 -2.3757 18 1 1.8919 1.0404 -2.4243 19 6 2.6124 -0.6616 -3.5091 20 7 2.9254 -1.9387 -3.4499 21 14 2.7901 0.2702 -5.1183 22 1 4.1519 0.8562 -5.2032 23 1 2.5804 -0.6616 -6.2555 24 1 1.7793 1.3564 -5.1756 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -1.7198 1.2952 29 1 1.7517 -0.1583 2.1369 30 1 3.9825 -0.4620 0.4319 31 1 5.9681 -2.0901 1.2503 32 1 6.1069 -0.5261 2.0886 33 1 5.8943 -1.6794 4.2738 34 1 5.7555 -3.2432 3.4348 35 1 10.4525 -3.7710 2.5628 36 1 2.2492 -1.6317 -1.1526 37 1 3.2495 -2.3957 -4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662189567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:18 Heat of formation + Delta-G solvation = 23.079332 kcal Electronic energy + Delta-G solvation = -19544.947571 eV Core-core repulsion = 16357.997094 eV Total energy + Delta-G solvation = -3186.950477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.06005 -40.70478 -37.94015 -35.30181 -35.10132 -33.60612 -32.95717 -31.60504 -30.51278 -27.78145 -25.92914 -25.20112 -23.61477 -21.69250 -21.40796 -20.89931 -19.32855 -19.23790 -17.96850 -17.13113 -16.94729 -16.60195 -16.28659 -15.98437 -15.59664 -15.32557 -14.77091 -14.34577 -14.09368 -13.69250 -13.62647 -13.29267 -13.21775 -13.09838 -13.03094 -12.75481 -12.48055 -12.17063 -12.15369 -11.68498 -11.63188 -11.12491 -11.04034 -10.99386 -10.89035 -10.61092 -9.96244 -9.00323 -7.89640 -5.18616 0.65212 1.51124 1.51980 1.59929 1.68889 1.81130 1.87642 2.37984 2.59567 3.23470 3.44781 3.67863 3.84769 3.91925 4.02168 4.12752 4.19765 4.34325 4.43743 4.58114 4.67189 4.77317 4.90971 4.93189 4.99291 5.08849 5.25981 5.28521 5.37007 5.45979 5.58374 5.64111 6.28655 6.31149 6.63586 7.12698 7.28622 7.38518 8.11305 8.35815 9.33124 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.003995 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.371330 B = 7006.394081 C = 8226.371605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.060 0.940 4 C 0.123 3.877 5 N -0.713 5.713 6 C 0.515 3.485 7 O -0.584 6.584 8 C -0.121 4.121 9 C -0.003 4.003 10 C 0.221 3.779 11 N -0.582 5.582 12 C 0.276 3.724 13 N -0.475 5.475 14 H 0.458 0.542 15 N -0.341 5.341 16 N -0.732 5.732 17 C -0.235 4.235 18 H 0.078 0.922 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.272 1.272 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.410 0.590 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.273 0.727 36 H 0.373 0.627 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.250 1.621 13.315 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.002 4.002 5 N -0.363 5.363 6 C 0.302 3.698 7 O -0.465 6.465 8 C -0.162 4.162 9 C -0.044 4.044 10 C -0.062 4.062 11 N -0.311 5.311 12 C -0.022 4.022 13 N -0.195 5.195 14 H 0.307 0.693 15 N -0.172 5.172 16 N -0.374 5.374 17 C -0.367 4.367 18 H 0.096 0.904 19 C -0.263 4.263 20 N -0.617 5.617 21 Si 0.797 3.203 22 H -0.215 1.215 23 H -0.229 1.229 24 H -0.197 1.197 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.246 0.754 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.289 0.711 36 H 0.205 0.795 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.411 1.823 14.063 18.844 hybrid contribution 0.975 0.122 -1.438 1.741 sum 13.386 1.945 12.625 18.503 Atomic orbital electron populations 1.22241 0.96857 1.01144 1.01336 1.20685 0.93559 0.95639 0.85081 0.92246 1.21569 0.79945 1.00393 0.98294 1.46005 1.08096 1.58907 1.23317 1.20846 0.90614 0.76717 0.81619 1.90650 1.71356 1.49584 1.34895 1.21457 0.90635 1.03921 1.00149 1.19506 0.83487 1.02927 0.98452 1.24239 0.97909 0.88677 0.95356 1.70446 1.04515 1.29179 1.26956 1.27076 0.95777 0.87766 0.91577 1.48075 1.08004 1.18083 1.45332 0.69253 1.77917 0.89322 1.23506 1.26448 1.42615 1.78331 1.10338 1.06066 1.19579 1.34767 0.94178 0.88165 0.90438 1.25450 1.03089 0.96669 1.01068 1.69821 1.52517 1.10123 1.29280 0.85237 0.77813 0.77383 0.79873 1.21455 1.22874 1.19685 0.90778 0.93721 0.93929 0.93145 0.90037 0.75357 0.88239 0.87300 0.88967 0.89307 0.71137 0.79501 0.94224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.49 71.98 0.68 -4.48 16 2 C 0.16 5.79 3.05 44.99 0.14 5.92 16 3 H 0.06 2.11 8.08 -2.39 -0.02 2.10 16 4 C 0.12 4.10 5.23 86.38 0.45 4.55 16 5 N -0.71 -23.49 5.39 -463.07 -2.49 -25.99 16 6 C 0.51 16.73 7.83 87.66 0.69 17.41 16 7 O -0.58 -22.20 15.98 -3.04 -0.05 -22.25 16 8 C -0.12 -3.20 5.68 29.85 0.17 -3.03 16 9 C 0.00 -0.09 5.13 29.85 0.15 0.06 16 10 C 0.22 5.70 7.39 138.63 1.03 6.72 16 11 N -0.58 -13.99 11.19 -191.79 -2.15 -16.14 16 12 C 0.28 3.77 13.13 180.36 2.37 6.13 16 13 N -0.48 -6.66 7.45 -60.48 -0.45 -7.11 16 14 H 0.46 2.54 8.96 -213.10 -1.91 0.63 16 15 N -0.34 -8.09 12.80 -51.33 -0.66 -8.75 16 16 N -0.73 -34.27 4.56 -322.95 -1.47 -35.74 16 17 C -0.24 -12.22 9.93 84.04 0.83 -11.38 16 18 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 20 N -0.97 -57.26 13.06 21.65 0.28 -56.98 16 21 Si 0.97 44.63 29.55 68.60 2.03 46.65 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.41 13.74 8.14 -92.71 -0.75 12.99 16 31 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.09 2.41 8.10 -2.39 -0.02 2.39 16 34 H 0.09 2.51 8.10 -2.38 -0.02 2.49 16 35 H 0.27 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.37 19.28 7.80 -92.70 -0.72 18.56 16 37 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -73.18 324.03 -0.26 -73.44 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -2.28 Total: 34.34 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 6.98 Total: 18.52 kcal Atomic # 7 Polarization: -143.77 SS G_CDS: -6.94 Total: -150.70 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -73.18 -0.26 -73.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662189567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.518 kcal (2) G-P(sol) polarization free energy of solvation -73.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds