Wall clock time and date at job start Mon Mar 30 2020 00:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34373 * 126.76277 * 2 1 4 4 N 1.30859 * 108.20103 * 180.02562 * 3 2 1 5 5 C 1.33633 * 109.78015 * 0.02562 * 4 3 2 6 6 N 1.39886 * 125.60525 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99766 * 0.02562 * 6 5 4 8 8 O 1.21588 * 120.00130 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99933 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00231 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47104 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47120 * 299.99706 * 11 10 9 13 13 C 1.53004 * 109.47023 * 59.99815 * 11 10 9 14 14 C 1.50702 * 109.46929 * 179.97438 * 11 10 9 15 15 H 1.07997 * 120.00348 * 357.00716 * 14 11 10 16 16 C 1.37881 * 119.99824 * 177.00607 * 14 11 10 17 17 N 1.31513 * 119.99933 * 5.53998 * 16 14 11 18 18 Si 1.86796 * 119.99919 * 185.54588 * 16 14 11 19 19 H 1.48494 * 109.47447 * 84.99526 * 18 16 14 20 20 H 1.48501 * 109.47039 * 204.99919 * 18 16 14 21 21 H 1.48504 * 109.46957 * 324.99882 * 18 16 14 22 22 N 1.31164 * 108.79099 * 0.23976 * 5 4 3 23 23 H 1.09005 * 109.47436 * 90.00182 * 1 2 3 24 24 H 1.09004 * 109.46650 * 209.99665 * 1 2 3 25 25 H 1.08991 * 109.47823 * 329.99456 * 1 2 3 26 26 H 1.07998 * 125.89755 * 0.02562 * 3 2 1 27 27 H 0.96994 * 119.99752 * 180.02562 * 6 5 4 28 28 H 0.97006 * 119.99818 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.46782 * 299.99559 * 10 9 7 30 30 H 1.08998 * 109.47327 * 59.99617 * 10 9 7 31 31 H 1.08998 * 109.47131 * 53.93570 * 12 11 10 32 32 H 1.09001 * 109.46819 * 173.93390 * 12 11 10 33 33 H 1.09002 * 109.46894 * 293.93503 * 12 11 10 34 34 H 1.09000 * 109.46900 * 60.00239 * 13 11 10 35 35 H 1.09003 * 109.46641 * 180.02562 * 13 11 10 36 36 H 1.08999 * 109.47374 * 299.99532 * 13 11 10 37 37 H 0.97000 * 119.99689 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.0765 0.0000 4 7 3.5097 0.6599 -0.0006 5 6 3.5381 -0.6761 -0.0015 6 7 4.6925 -1.4661 -0.0028 7 6 5.9078 -0.8835 -0.0027 8 8 6.0008 0.3289 -0.0019 9 7 7.0201 -1.6446 -0.0045 10 6 8.3411 -1.0113 -0.0038 11 6 9.4246 -2.0916 -0.0055 12 6 9.2767 -2.9642 1.2426 13 6 9.2762 -2.9607 -1.2559 14 6 10.7835 -1.4401 -0.0054 15 1 10.8667 -0.3644 -0.0531 16 6 11.9207 -2.2175 0.0556 17 7 11.8248 -3.5281 0.0037 18 14 13.5973 -1.4090 0.2120 19 1 13.8818 -1.1320 1.6429 20 1 14.6378 -2.3178 -0.3327 21 1 13.6053 -0.1344 -0.5499 22 7 2.3057 -1.1249 -0.0067 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8898 0.5139 26 1 1.9473 2.1074 0.0004 27 1 4.6183 -2.4332 -0.0038 28 1 6.9459 -2.6118 -0.0054 29 1 8.4463 -0.3894 -0.8927 30 1 8.4469 -0.3925 0.8873 31 1 8.2585 -3.3492 1.2982 32 1 9.9777 -3.7972 1.1886 33 1 9.4887 -2.3678 2.1300 34 1 9.3816 -2.3391 -2.1450 35 1 10.0478 -3.7306 -1.2569 36 1 8.2934 -3.4320 -1.2564 37 1 12.6248 -4.0749 0.0470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662300027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:21 Heat of formation + Delta-G solvation = 77.771984 kcal Electronic energy + Delta-G solvation = -20072.240797 eV Core-core repulsion = 16887.661971 eV Total energy + Delta-G solvation = -3184.578826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11049 -39.59017 -36.55909 -34.93677 -33.50599 -32.97157 -31.10276 -30.58930 -27.14709 -25.69979 -25.58489 -24.86966 -22.54393 -21.89277 -20.22296 -18.77738 -18.16949 -17.58733 -16.23636 -16.10114 -15.79689 -15.01562 -14.80978 -14.62916 -14.19579 -13.62086 -13.59281 -13.37225 -12.85012 -12.80831 -12.15570 -11.84465 -11.45064 -11.17599 -10.93888 -10.76359 -10.66536 -10.33803 -10.21854 -10.09527 -9.85028 -9.59474 -9.53189 -9.29978 -8.77326 -8.69883 -8.38724 -8.21114 -6.00249 -4.08789 1.53437 1.94602 2.84738 2.89174 3.31630 3.37905 3.41949 3.78915 4.17294 4.33702 4.43256 4.66442 4.81852 5.05255 5.10735 5.27139 5.52037 6.17540 6.21969 6.38287 6.51071 6.59111 6.74768 6.81125 6.84981 6.91888 7.05682 7.06566 7.10056 7.39506 7.58700 7.72978 8.02314 8.03647 8.15545 8.39631 8.46700 8.90077 8.97231 9.56532 11.01905 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.057361 B = 0.003430 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.015636 B = 8160.883776 C = 8450.779950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.388 5.388 3 C 0.265 3.735 4 N -0.514 5.514 5 C 0.477 3.523 6 N -0.643 5.643 7 C 0.696 3.304 8 O -0.541 6.541 9 N -0.725 5.725 10 C 0.151 3.849 11 C 0.056 3.944 12 C -0.129 4.129 13 C -0.130 4.130 14 C -0.507 4.507 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 N -0.354 5.354 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.221 0.779 27 H 0.416 0.584 28 H 0.395 0.605 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.006 0.994 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.005 0.995 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.673 3.015 0.136 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.181 5.181 3 C -0.032 4.032 4 N -0.244 5.244 5 C 0.106 3.894 6 N -0.300 5.300 7 C 0.394 3.606 8 O -0.413 6.413 9 N -0.381 5.381 10 C 0.028 3.972 11 C 0.056 3.944 12 C -0.187 4.187 13 C -0.188 4.188 14 C -0.545 4.545 15 H 0.077 0.923 16 C -0.134 4.134 17 N -0.524 5.524 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.199 1.199 22 N -0.191 5.191 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.237 0.763 27 H 0.253 0.747 28 H 0.230 0.770 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.024 0.976 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.282 3.451 0.131 20.574 hybrid contribution 0.533 -0.384 0.090 0.664 sum -19.748 3.067 0.220 19.986 Atomic orbital electron populations 1.21876 0.73844 1.04725 1.03582 1.50106 1.07574 1.03740 1.56726 1.26190 0.85095 0.95675 0.96273 1.70698 1.19399 1.09159 1.25143 1.19994 0.85775 0.87440 0.96144 1.41786 1.01418 1.09054 1.77746 1.15961 0.79596 0.86052 0.78987 1.91024 1.84657 1.11186 1.54412 1.45503 1.05161 1.09553 1.77878 1.21664 0.78217 0.96586 1.00707 1.18372 0.92000 0.91224 0.92842 1.21809 0.97454 1.01601 0.97820 1.21853 0.98343 1.00980 0.97647 1.20971 0.89603 0.93133 1.50844 0.92319 1.24873 0.98957 0.94824 0.94777 1.69828 1.28693 1.03631 1.50257 0.86590 0.83639 0.79298 0.78362 1.20633 1.21379 1.19933 1.78149 0.99375 1.06802 1.34792 0.90499 0.89233 0.88979 0.76266 0.74707 0.77005 0.92616 0.92593 0.97459 0.90026 0.95117 0.95377 0.89602 0.97580 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.52 59.84 0.69 1.17 16 2 N -0.39 -4.07 4.03 -69.46 -0.28 -4.35 16 3 C 0.27 2.95 12.65 -90.68 -1.15 1.80 16 4 N -0.51 -8.64 9.37 -14.92 -0.14 -8.78 16 5 C 0.48 7.84 8.81 -320.83 -2.83 5.02 16 6 N -0.64 -10.15 5.44 -17.22 -0.09 -10.25 16 7 C 0.70 13.29 8.53 -86.92 -0.74 12.55 16 8 O -0.54 -12.47 15.02 5.29 0.08 -12.39 16 9 N -0.73 -13.30 4.91 -65.23 -0.32 -13.62 16 10 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 11 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 12 C -0.13 -2.91 8.03 37.16 0.30 -2.61 16 13 C -0.13 -2.95 8.10 37.16 0.30 -2.65 16 14 C -0.51 -13.34 8.01 -34.44 -0.28 -13.62 16 15 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 16 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 17 N -0.89 -23.69 9.45 55.43 0.52 -23.16 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 N -0.35 -5.05 12.72 30.04 0.38 -4.66 16 23 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.22 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.42 5.12 8.84 -40.82 -0.36 4.76 16 28 H 0.39 6.38 6.17 -40.82 -0.25 6.12 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.01 0.13 6.71 -51.93 -0.35 -0.22 16 32 H 0.08 2.01 6.25 -51.93 -0.32 1.69 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 2.14 6.10 -51.93 -0.32 1.82 16 36 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 37 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -34.37 309.65 -8.98 -43.35 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.88 Total: 5.56 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -3.89 Total: 7.82 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: 0.07 Total: -64.83 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.37 -8.98 -43.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662300027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.118 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds