Wall clock time and date at job start Mon Mar 30 2020 00:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34373 * 126.76277 * 2 1 4 4 N 1.30859 * 108.20103 * 180.02562 * 3 2 1 5 5 C 1.33633 * 109.78015 * 0.02562 * 4 3 2 6 6 N 1.39886 * 125.60525 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99766 * 0.02562 * 6 5 4 8 8 O 1.21588 * 120.00130 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99933 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00231 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47104 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47120 * 299.99706 * 11 10 9 13 13 C 1.53004 * 109.47023 * 59.99815 * 11 10 9 14 14 C 1.50702 * 109.46929 * 179.97438 * 11 10 9 15 15 H 1.07997 * 120.00348 * 357.00716 * 14 11 10 16 16 C 1.37881 * 119.99824 * 177.00607 * 14 11 10 17 17 N 1.31513 * 119.99933 * 5.53998 * 16 14 11 18 18 Si 1.86796 * 119.99919 * 185.54588 * 16 14 11 19 19 H 1.48494 * 109.47447 * 84.99526 * 18 16 14 20 20 H 1.48501 * 109.47039 * 204.99919 * 18 16 14 21 21 H 1.48504 * 109.46957 * 324.99882 * 18 16 14 22 22 N 1.31164 * 108.79099 * 0.23976 * 5 4 3 23 23 H 1.09005 * 109.47436 * 90.00182 * 1 2 3 24 24 H 1.09004 * 109.46650 * 209.99665 * 1 2 3 25 25 H 1.08991 * 109.47823 * 329.99456 * 1 2 3 26 26 H 1.07998 * 125.89755 * 0.02562 * 3 2 1 27 27 H 0.96994 * 119.99752 * 180.02562 * 6 5 4 28 28 H 0.97006 * 119.99818 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.46782 * 299.99559 * 10 9 7 30 30 H 1.08998 * 109.47327 * 59.99617 * 10 9 7 31 31 H 1.08998 * 109.47131 * 53.93570 * 12 11 10 32 32 H 1.09001 * 109.46819 * 173.93390 * 12 11 10 33 33 H 1.09002 * 109.46894 * 293.93503 * 12 11 10 34 34 H 1.09000 * 109.46900 * 60.00239 * 13 11 10 35 35 H 1.09003 * 109.46641 * 180.02562 * 13 11 10 36 36 H 1.08999 * 109.47374 * 299.99532 * 13 11 10 37 37 H 0.97000 * 119.99689 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.0765 0.0000 4 7 3.5097 0.6599 -0.0006 5 6 3.5381 -0.6761 -0.0015 6 7 4.6925 -1.4661 -0.0028 7 6 5.9078 -0.8835 -0.0027 8 8 6.0008 0.3289 -0.0019 9 7 7.0201 -1.6446 -0.0045 10 6 8.3411 -1.0113 -0.0038 11 6 9.4246 -2.0916 -0.0055 12 6 9.2767 -2.9642 1.2426 13 6 9.2762 -2.9607 -1.2559 14 6 10.7835 -1.4401 -0.0054 15 1 10.8667 -0.3644 -0.0531 16 6 11.9207 -2.2175 0.0556 17 7 11.8248 -3.5281 0.0037 18 14 13.5973 -1.4090 0.2120 19 1 13.8818 -1.1320 1.6429 20 1 14.6378 -2.3178 -0.3327 21 1 13.6053 -0.1344 -0.5499 22 7 2.3057 -1.1249 -0.0067 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8898 0.5139 26 1 1.9473 2.1074 0.0004 27 1 4.6183 -2.4332 -0.0038 28 1 6.9459 -2.6118 -0.0054 29 1 8.4463 -0.3894 -0.8927 30 1 8.4469 -0.3925 0.8873 31 1 8.2585 -3.3492 1.2982 32 1 9.9777 -3.7972 1.1886 33 1 9.4887 -2.3678 2.1300 34 1 9.3816 -2.3391 -2.1450 35 1 10.0478 -3.7306 -1.2569 36 1 8.2934 -3.4320 -1.2564 37 1 12.6248 -4.0749 0.0470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662300027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:21 Heat of formation + Delta-G solvation = 56.291936 kcal Electronic energy + Delta-G solvation = -20073.172242 eV Core-core repulsion = 16887.661971 eV Total energy + Delta-G solvation = -3185.510270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.09490 -41.06662 -38.29084 -36.17469 -35.06130 -34.16217 -32.66428 -31.87982 -27.95905 -27.53842 -27.37987 -26.61870 -23.67523 -22.95846 -21.53704 -20.58079 -19.59012 -18.65560 -17.75508 -17.24803 -17.05343 -16.58387 -16.34084 -16.01999 -15.47795 -15.11502 -14.78247 -14.69903 -14.03017 -13.99879 -13.88774 -13.23295 -13.06065 -12.68683 -12.65877 -12.58007 -12.23942 -12.12476 -11.93887 -11.54021 -11.45391 -11.18882 -10.83823 -10.75432 -10.68516 -10.37427 -10.06829 -9.56015 -8.01072 -6.15175 0.59328 0.94977 1.45016 1.47492 1.55228 1.73404 1.86063 2.42033 2.47819 3.03197 3.23279 3.56086 3.87419 4.34818 4.46088 4.52530 4.55308 4.57884 4.74236 4.78498 5.00806 5.08304 5.11471 5.22504 5.26507 5.36247 5.56553 5.59863 5.68423 5.70049 5.72265 6.02814 6.16307 6.23404 6.45161 6.80945 6.88871 7.28856 7.50946 7.52509 8.98651 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.057361 B = 0.003430 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.015636 B = 8160.883776 C = 8450.779950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.379 5.379 3 C 0.276 3.724 4 N -0.576 5.576 5 C 0.449 3.551 6 N -0.632 5.632 7 C 0.700 3.300 8 O -0.583 6.583 9 N -0.715 5.715 10 C 0.168 3.832 11 C 0.053 3.947 12 C -0.119 4.119 13 C -0.121 4.121 14 C -0.530 4.530 15 H 0.046 0.954 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.945 3.055 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.276 1.276 22 N -0.364 5.364 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.131 0.869 26 H 0.271 0.729 27 H 0.431 0.569 28 H 0.408 0.592 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.862 3.208 0.222 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.171 5.171 3 C -0.021 4.021 4 N -0.307 5.307 5 C 0.078 3.922 6 N -0.289 5.289 7 C 0.399 3.601 8 O -0.458 6.458 9 N -0.372 5.372 10 C 0.044 3.956 11 C 0.052 3.948 12 C -0.177 4.177 13 C -0.179 4.179 14 C -0.569 4.569 15 H 0.064 0.936 16 C -0.171 4.171 17 N -0.538 5.538 18 Si 0.771 3.229 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.201 1.201 22 N -0.202 5.202 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.149 0.851 26 H 0.286 0.714 27 H 0.270 0.730 28 H 0.245 0.755 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.556 3.595 0.216 22.841 hybrid contribution 1.011 -0.408 0.056 1.092 sum -21.545 3.186 0.272 21.781 Atomic orbital electron populations 1.22392 0.70351 1.06796 1.05332 1.50474 1.09237 1.02593 1.54841 1.27006 0.83710 0.97425 0.93922 1.70599 1.22839 1.09749 1.27558 1.20175 0.86157 0.87787 0.98040 1.41407 1.00578 1.09791 1.77139 1.15955 0.80334 0.85445 0.78393 1.90991 1.85486 1.13098 1.56192 1.45160 1.04074 1.10005 1.77929 1.21216 0.79343 0.95770 0.99226 1.18358 0.91240 0.91637 0.93523 1.21658 0.98785 1.00416 0.96855 1.21699 0.99329 1.00048 0.96815 1.21265 0.91532 0.92819 1.51251 0.93567 1.25440 1.01563 0.95366 0.94681 1.69929 1.29249 1.04208 1.50365 0.85781 0.80458 0.78430 0.78184 1.20440 1.20925 1.20079 1.78035 0.98934 1.08939 1.34300 0.88847 0.89022 0.85110 0.71398 0.72955 0.75501 0.94199 0.94119 0.94283 0.92090 0.96234 0.96276 0.91849 0.94445 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.52 127.77 1.47 1.99 16 2 N -0.38 -6.95 4.03 -373.66 -1.51 -8.46 16 3 C 0.28 5.47 12.65 180.37 2.28 7.75 16 4 N -0.58 -18.95 9.37 -201.12 -1.88 -20.84 16 5 C 0.45 14.49 8.81 260.79 2.30 16.79 16 6 N -0.63 -19.61 5.44 -326.65 -1.78 -21.39 16 7 C 0.70 26.69 8.53 179.05 1.53 28.22 16 8 O -0.58 -27.29 15.02 -3.99 -0.06 -27.35 16 9 N -0.72 -25.79 4.91 -478.53 -2.35 -28.14 16 10 C 0.17 7.34 4.50 86.38 0.39 7.73 16 11 C 0.05 2.48 0.50 -52.92 -0.03 2.45 16 12 C -0.12 -5.32 8.03 71.98 0.58 -4.74 16 13 C -0.12 -5.41 8.10 71.98 0.58 -4.83 16 14 C -0.53 -28.28 8.01 25.60 0.20 -28.07 16 15 H 0.05 2.52 7.75 -2.91 -0.02 2.49 16 16 C 0.03 1.56 5.13 84.66 0.43 1.99 16 17 N -0.90 -48.21 9.45 21.45 0.20 -48.01 16 18 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 N -0.36 -9.86 12.72 -58.88 -0.75 -10.61 16 23 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 24 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.27 1.99 8.06 -2.91 -0.02 1.97 16 27 H 0.43 10.15 8.84 -92.71 -0.82 9.33 16 28 H 0.41 12.46 6.17 -92.70 -0.57 11.89 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.44 6.71 -2.39 -0.02 1.43 16 32 H 0.06 2.99 6.25 -2.39 -0.01 2.97 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 3.14 6.10 -2.39 -0.01 3.13 16 36 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 37 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -76.22 309.65 3.36 -72.86 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.29 Total: 17.67 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 9.74 Total: 29.28 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -8.06 Total: -137.45 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -76.22 3.36 -72.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662300027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.148 kcal (2) G-P(sol) polarization free energy of solvation -76.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds