Wall clock time and date at job start Mon Mar 30 2020 00:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21592 * 120.00500 * 0.02562 * 7 6 5 9 9 C 1.47527 * 119.99754 * 180.02562 * 7 6 5 10 10 C 1.36597 * 125.77299 * 179.72191 * 9 7 6 11 11 N 1.34813 * 106.84024 * 179.89758 * 10 9 7 12 12 C 1.46495 * 126.59358 * 180.10160 * 11 10 9 13 13 N 1.40209 * 106.81092 * 0.35295 * 11 10 9 14 14 N 1.28761 * 108.36940 * 359.77746 * 13 11 10 15 15 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 16 16 C 1.36933 * 120.00376 * 275.00368 * 15 2 1 17 17 H 1.07998 * 120.00056 * 0.02562 * 16 15 2 18 18 C 1.38820 * 120.00147 * 180.02562 * 16 15 2 19 19 N 1.31619 * 119.99690 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99941 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47389 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47494 * 120.00297 * 20 18 16 23 23 H 1.48506 * 109.46820 * 239.99804 * 20 18 16 24 24 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 25 25 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 26 26 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 28 28 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 31 31 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 32 32 H 1.08003 * 126.57599 * 0.03172 * 10 9 7 33 33 H 1.08995 * 109.47984 * 270.27554 * 12 11 10 34 34 H 1.09003 * 109.47205 * 30.27821 * 12 11 10 35 35 H 1.09006 * 109.46831 * 150.26950 * 12 11 10 36 36 H 0.97003 * 119.99849 * 95.00425 * 15 2 1 37 37 H 0.97004 * 120.00058 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1605 -0.7983 -2.0218 9 6 5.8661 -2.0350 -3.9795 10 6 7.1727 -2.1388 -4.3640 11 7 7.1874 -2.8495 -5.5095 12 6 8.3688 -3.2173 -6.2938 13 7 5.8542 -3.1638 -5.8088 14 7 5.1038 -2.6687 -4.8871 15 7 2.0183 -0.6905 1.1962 16 6 2.1490 -0.0074 2.3758 17 1 1.8917 1.0404 2.4244 18 6 2.6122 -0.6616 3.5091 19 7 2.9262 -1.9384 3.4497 20 14 2.7898 0.2701 5.1183 21 1 2.3749 1.6822 4.9211 22 1 1.9297 -0.3593 6.1524 23 1 4.2069 0.2282 5.5607 24 1 -0.3635 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6055 -0.2617 -2.1369 28 1 1.7517 -1.7714 -1.2056 29 1 3.9995 -1.0726 -0.4258 30 1 3.8532 0.4372 -1.3572 31 1 3.4261 -1.7357 -3.1104 32 1 8.0297 -1.7317 -3.8480 33 1 8.5766 -2.4368 -7.0257 34 1 9.2255 -3.3297 -5.6294 35 1 8.1833 -4.1593 -6.8100 36 1 2.2490 -1.6317 1.1527 37 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662914701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:00 Heat of formation + Delta-G solvation = 65.668546 kcal Electronic energy + Delta-G solvation = -19534.112014 eV Core-core repulsion = 16349.008344 eV Total energy + Delta-G solvation = -3185.103670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36413 -39.17492 -36.51391 -34.95340 -34.25167 -32.20822 -31.19634 -29.33336 -28.36154 -27.71101 -24.31006 -23.50330 -22.49550 -22.04452 -20.53737 -19.70016 -18.18569 -17.14202 -16.49213 -16.22834 -15.78373 -15.25736 -14.79232 -14.64875 -14.04844 -13.97462 -13.58814 -13.43914 -13.42319 -12.83147 -12.43644 -12.33913 -11.97875 -11.51291 -11.47039 -11.01806 -10.87301 -10.69876 -10.64596 -10.58424 -10.24566 -10.02992 -9.78298 -9.58581 -9.48624 -8.87107 -8.72731 -6.89247 -5.69753 -2.98136 0.92513 1.62411 1.78437 3.29964 3.38751 3.48599 3.54158 3.56313 4.06206 4.09524 4.54353 4.61193 4.65729 4.81108 4.84059 5.12495 5.36719 5.48138 5.60198 5.62667 5.77484 5.94597 6.06138 6.15498 6.24447 6.41503 6.46509 6.53876 6.73499 6.77825 6.93061 7.12830 7.57689 7.77683 7.83829 8.35360 8.48651 9.60026 10.17384 10.52041 11.53010 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027360 B = 0.003521 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.133569 B = 7950.838798 C = 8633.125936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.598 3.402 8 O -0.536 6.536 9 C -0.095 4.095 10 C 0.091 3.909 11 N -0.367 5.367 12 C 0.088 3.912 13 N -0.069 5.069 14 N -0.205 5.205 15 N -0.724 5.724 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.292 1.292 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.404 0.596 32 H 0.206 0.794 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.383 0.617 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.748 -1.558 -20.841 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.361 5.361 7 C 0.381 3.619 8 O -0.412 6.412 9 C -0.235 4.235 10 C -0.065 4.065 11 N -0.152 5.152 12 C -0.053 4.053 13 N -0.050 5.050 14 N -0.079 5.079 15 N -0.366 5.366 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.239 0.761 32 H 0.223 0.777 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.217 0.783 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.420 -1.738 -21.149 22.829 hybrid contribution 0.699 0.296 1.217 1.435 sum 9.119 -1.442 -19.932 21.966 Atomic orbital electron populations 1.22422 0.99136 1.00861 0.99938 1.20151 0.91871 0.95565 0.85996 0.93257 1.22067 0.93787 1.01982 0.99364 1.21523 0.94578 0.97163 0.86775 1.45911 1.06709 1.56043 1.27445 1.16737 0.82971 0.79456 0.82728 1.90843 1.55582 1.46325 1.48456 1.21632 0.90718 1.10269 1.00887 1.23409 1.00340 0.94636 0.88141 1.50361 1.09379 1.37328 1.18106 1.22186 0.83227 1.03503 0.96375 1.81981 0.82987 1.21337 1.18689 1.74622 1.26727 1.06605 0.99899 1.42475 1.78063 1.10694 1.05372 1.19271 1.36193 0.93858 0.87331 0.91162 1.24727 1.02289 0.95966 0.98031 1.69670 1.51071 1.08678 1.28686 0.86148 0.77271 0.78793 0.84179 1.20600 1.22029 1.21931 0.92756 0.94545 0.93503 0.91783 0.91463 0.89463 0.91549 0.76115 0.77724 0.89253 0.88347 0.88101 0.78262 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.40 2.89 -67.94 -0.20 3.21 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.13 4.87 -26.74 -0.13 -2.26 16 5 C 0.12 2.10 5.56 -4.04 -0.02 2.08 16 6 N -0.71 -10.78 5.55 -61.35 -0.34 -11.12 16 7 C 0.60 9.60 7.82 -12.48 -0.10 9.51 16 8 O -0.54 -10.27 16.86 5.28 0.09 -10.18 16 9 C -0.10 -1.28 6.99 -83.55 -0.58 -1.87 16 10 C 0.09 0.91 11.31 -16.83 -0.19 0.72 16 11 N -0.37 -3.21 4.03 -67.86 -0.27 -3.48 16 12 C 0.09 0.28 11.51 59.84 0.69 0.97 16 13 N -0.07 -0.85 13.78 60.35 0.83 -0.02 16 14 N -0.20 -2.80 12.04 32.85 0.40 -2.40 16 15 N -0.72 -17.96 4.57 -53.43 -0.24 -18.20 16 16 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 20 Si 0.90 22.78 29.55 -169.99 -5.02 17.75 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.40 5.32 8.16 -40.82 -0.33 4.98 16 32 H 0.21 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 35 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 37 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -35.11 325.91 -4.60 -39.71 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.25 Total: 8.23 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.42 Total: 2.59 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 1.09 Total: -63.01 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.11 -4.60 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662914701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.377 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds