Wall clock time and date at job start Mon Mar 30 2020 00:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46745 * 2 1 4 4 C 1.52997 * 109.47072 * 120.00624 * 2 1 3 5 5 C 1.53004 * 109.47000 * 184.99738 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21593 * 120.00264 * 359.72086 * 7 6 5 9 9 C 1.47519 * 119.99665 * 179.72393 * 7 6 5 10 10 C 1.36597 * 125.77183 * 179.71279 * 9 7 6 11 11 N 1.34820 * 106.84331 * 179.89938 * 10 9 7 12 12 C 1.46498 * 126.59326 * 180.10678 * 11 10 9 13 13 N 1.40212 * 106.80530 * 0.35587 * 11 10 9 14 14 N 1.28761 * 108.36947 * 359.77681 * 13 11 10 15 15 N 1.46496 * 109.46451 * 240.00353 * 2 1 3 16 16 C 1.36939 * 120.00442 * 85.00577 * 15 2 1 17 17 H 1.08006 * 119.99454 * 359.97438 * 16 15 2 18 18 C 1.38807 * 120.00698 * 179.97438 * 16 15 2 19 19 N 1.31625 * 119.99442 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00501 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46767 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47163 * 119.99625 * 20 18 16 23 23 H 1.48503 * 109.47291 * 240.00076 * 20 18 16 24 24 H 1.08999 * 109.47409 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47019 * 299.99619 * 1 2 3 26 26 H 1.08996 * 109.47178 * 59.99299 * 1 2 3 27 27 H 1.08995 * 109.47672 * 65.00068 * 4 2 1 28 28 H 1.09006 * 109.46819 * 304.99498 * 4 2 1 29 29 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 30 30 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 31 31 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 32 32 H 1.07999 * 126.57979 * 0.03933 * 10 9 7 33 33 H 1.08998 * 109.47421 * 270.27109 * 12 11 10 34 34 H 1.08994 * 109.47494 * 30.27780 * 12 11 10 35 35 H 1.09004 * 109.46382 * 150.27265 * 12 11 10 36 36 H 0.97008 * 120.00047 * 264.99289 * 15 2 1 37 37 H 0.97003 * 119.99361 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3135 6 7 4.0532 -1.3037 2.5099 7 6 5.3736 -1.3345 2.7783 8 8 6.1600 -0.7939 2.0247 9 6 5.8648 -2.0243 3.9862 10 6 7.1718 -2.1326 4.3681 11 7 7.1854 -2.8316 5.5208 12 6 8.3664 -3.1953 6.3078 13 7 5.8524 -3.1484 5.8185 14 7 5.1025 -2.6576 4.8941 15 7 2.0182 -0.6905 -1.1962 16 6 2.1490 -0.0074 -2.3758 17 1 1.8919 1.0405 -2.4243 18 6 2.6121 -0.6615 -3.5091 19 7 2.9259 -1.9384 -3.4499 20 14 2.7899 0.2702 -5.1183 21 1 2.3752 1.6824 -4.9210 22 1 4.2068 0.2282 -5.5607 23 1 1.9295 -0.3590 -6.1524 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.7517 -1.7716 1.2055 28 1 1.6054 -0.2618 2.1369 29 1 3.8532 0.4369 1.3572 30 1 3.9994 -1.0729 0.4258 31 1 3.4258 -1.7346 3.1113 32 1 8.0296 -1.7328 3.8477 33 1 8.7469 -4.1585 5.9680 34 1 9.1366 -2.4347 6.1799 35 1 8.0942 -3.2632 7.3611 36 1 2.2490 -1.6318 -1.1527 37 1 3.2491 -2.3956 -4.2420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662914703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:02 Heat of formation + Delta-G solvation = 65.669755 kcal Electronic energy + Delta-G solvation = -19533.387177 eV Core-core repulsion = 16348.283559 eV Total energy + Delta-G solvation = -3185.103618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.36424 -39.17488 -36.51346 -34.95361 -34.25161 -32.20790 -31.19684 -29.33262 -28.36144 -27.71099 -24.31029 -23.50373 -22.49610 -22.04456 -20.53741 -19.70051 -18.18570 -17.14162 -16.49241 -16.22801 -15.78298 -15.26061 -14.78226 -14.65683 -14.04240 -13.98551 -13.57594 -13.44890 -13.42282 -12.83124 -12.43626 -12.33970 -11.97869 -11.51302 -11.47046 -11.01760 -10.87321 -10.69915 -10.64522 -10.58370 -10.24617 -10.02990 -9.78312 -9.58594 -9.48671 -8.87130 -8.72696 -6.89195 -5.69754 -2.98174 0.92472 1.62372 1.78375 3.29911 3.38739 3.48615 3.54141 3.56303 4.06025 4.09302 4.54743 4.61128 4.65722 4.81154 4.83999 5.12365 5.36688 5.48154 5.60162 5.62676 5.77471 5.94587 6.06086 6.15469 6.24436 6.41480 6.46527 6.53886 6.73495 6.77836 6.93090 7.12833 7.57650 7.77634 7.83797 8.35326 8.48718 9.60048 10.17364 10.52005 11.53008 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.003519 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.403163 B = 7955.893044 C = 8637.781696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.598 3.402 8 O -0.536 6.536 9 C -0.095 4.095 10 C 0.091 3.909 11 N -0.367 5.367 12 C 0.088 3.912 13 N -0.069 5.069 14 N -0.205 5.205 15 N -0.724 5.724 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.293 1.293 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.404 0.596 32 H 0.206 0.794 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.384 0.616 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.739 -1.460 20.903 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.361 5.361 7 C 0.381 3.619 8 O -0.412 6.412 9 C -0.235 4.235 10 C -0.065 4.065 11 N -0.152 5.152 12 C -0.053 4.053 13 N -0.050 5.050 14 N -0.079 5.079 15 N -0.366 5.366 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.220 1.220 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.239 0.761 32 H 0.223 0.777 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.217 0.783 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.410 -1.636 21.214 22.879 hybrid contribution 0.702 0.276 -1.230 1.442 sum 9.112 -1.360 19.984 22.006 Atomic orbital electron populations 1.22424 0.99137 1.00860 0.99937 1.20151 0.91872 0.95563 0.85994 0.93254 1.22069 0.93786 1.01982 0.99364 1.21524 0.94580 0.97166 0.86770 1.45912 1.06741 1.56096 1.27360 1.16737 0.82973 0.79445 0.82739 1.90843 1.55555 1.46260 1.48548 1.21628 0.90690 1.10330 1.00855 1.23410 1.00316 0.94860 0.87941 1.50365 1.09383 1.37706 1.17726 1.22186 0.83278 1.02930 0.96895 1.81982 0.83021 1.21242 1.18747 1.74618 1.26730 1.06532 0.99973 1.42478 1.78068 1.10692 1.05371 1.19271 1.36188 0.93852 0.87331 0.91165 1.24726 1.02292 0.95969 0.98032 1.69675 1.51085 1.08672 1.28678 0.86148 0.77271 0.78793 0.84178 1.20601 1.21931 1.22027 0.93501 0.94547 0.92757 0.91460 0.91784 0.91560 0.89455 0.76114 0.77726 0.89202 0.88372 0.88124 0.78260 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.40 2.89 -67.93 -0.20 3.21 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.13 4.87 -26.73 -0.13 -2.26 16 5 C 0.12 2.10 5.56 -4.04 -0.02 2.08 16 6 N -0.71 -10.78 5.55 -61.35 -0.34 -11.12 16 7 C 0.60 9.60 7.82 -12.48 -0.10 9.50 16 8 O -0.54 -10.27 16.86 5.28 0.09 -10.18 16 9 C -0.10 -1.28 6.99 -83.55 -0.58 -1.86 16 10 C 0.09 0.91 11.31 -16.83 -0.19 0.72 16 11 N -0.37 -3.21 4.03 -67.86 -0.27 -3.48 16 12 C 0.09 0.28 11.51 59.85 0.69 0.97 16 13 N -0.07 -0.85 13.78 60.35 0.83 -0.02 16 14 N -0.20 -2.80 12.04 32.85 0.40 -2.40 16 15 N -0.72 -17.96 4.57 -53.43 -0.24 -18.20 16 16 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 20 Si 0.90 22.78 29.55 -169.99 -5.02 17.75 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 31 H 0.40 5.31 8.16 -40.82 -0.33 4.98 16 32 H 0.21 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 37 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -35.11 325.91 -4.60 -39.71 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.25 Total: 8.23 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.42 Total: 2.59 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 1.09 Total: -63.02 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.11 -4.60 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662914703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.382 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds