Wall clock time and date at job start Mon Mar 30 2020 00:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46745 * 2 1 4 4 C 1.52997 * 109.47072 * 120.00624 * 2 1 3 5 5 C 1.53004 * 109.47000 * 184.99738 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21593 * 120.00264 * 359.72086 * 7 6 5 9 9 C 1.47519 * 119.99665 * 179.72393 * 7 6 5 10 10 C 1.36597 * 125.77183 * 179.71279 * 9 7 6 11 11 N 1.34820 * 106.84331 * 179.89938 * 10 9 7 12 12 C 1.46498 * 126.59326 * 180.10678 * 11 10 9 13 13 N 1.40212 * 106.80530 * 0.35587 * 11 10 9 14 14 N 1.28761 * 108.36947 * 359.77681 * 13 11 10 15 15 N 1.46496 * 109.46451 * 240.00353 * 2 1 3 16 16 C 1.36939 * 120.00442 * 85.00577 * 15 2 1 17 17 H 1.08006 * 119.99454 * 359.97438 * 16 15 2 18 18 C 1.38807 * 120.00698 * 179.97438 * 16 15 2 19 19 N 1.31625 * 119.99442 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00501 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46767 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47163 * 119.99625 * 20 18 16 23 23 H 1.48503 * 109.47291 * 240.00076 * 20 18 16 24 24 H 1.08999 * 109.47409 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47019 * 299.99619 * 1 2 3 26 26 H 1.08996 * 109.47178 * 59.99299 * 1 2 3 27 27 H 1.08995 * 109.47672 * 65.00068 * 4 2 1 28 28 H 1.09006 * 109.46819 * 304.99498 * 4 2 1 29 29 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 30 30 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 31 31 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 32 32 H 1.07999 * 126.57979 * 0.03933 * 10 9 7 33 33 H 1.08998 * 109.47421 * 270.27109 * 12 11 10 34 34 H 1.08994 * 109.47494 * 30.27780 * 12 11 10 35 35 H 1.09004 * 109.46382 * 150.27265 * 12 11 10 36 36 H 0.97008 * 120.00047 * 264.99289 * 15 2 1 37 37 H 0.97003 * 119.99361 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3135 6 7 4.0532 -1.3037 2.5099 7 6 5.3736 -1.3345 2.7783 8 8 6.1600 -0.7939 2.0247 9 6 5.8648 -2.0243 3.9862 10 6 7.1718 -2.1326 4.3681 11 7 7.1854 -2.8316 5.5208 12 6 8.3664 -3.1953 6.3078 13 7 5.8524 -3.1484 5.8185 14 7 5.1025 -2.6576 4.8941 15 7 2.0182 -0.6905 -1.1962 16 6 2.1490 -0.0074 -2.3758 17 1 1.8919 1.0405 -2.4243 18 6 2.6121 -0.6615 -3.5091 19 7 2.9259 -1.9384 -3.4499 20 14 2.7899 0.2702 -5.1183 21 1 2.3752 1.6824 -4.9210 22 1 4.2068 0.2282 -5.5607 23 1 1.9295 -0.3590 -6.1524 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.7517 -1.7716 1.2055 28 1 1.6054 -0.2618 2.1369 29 1 3.8532 0.4369 1.3572 30 1 3.9994 -1.0729 0.4258 31 1 3.4258 -1.7346 3.1113 32 1 8.0296 -1.7328 3.8477 33 1 8.7469 -4.1585 5.9680 34 1 9.1366 -2.4347 6.1799 35 1 8.0942 -3.2632 7.3611 36 1 2.2490 -1.6318 -1.1527 37 1 3.2491 -2.3956 -4.2420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662914703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:02 Heat of formation + Delta-G solvation = 37.970477 kcal Electronic energy + Delta-G solvation = -19534.588308 eV Core-core repulsion = 16348.283559 eV Total energy + Delta-G solvation = -3186.304749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.22313 -40.45710 -38.11292 -35.93230 -35.51372 -34.09947 -32.18262 -30.98002 -29.68336 -28.53475 -25.93072 -25.08343 -23.50410 -23.07838 -21.81340 -21.13019 -19.38677 -19.00186 -17.31394 -17.13657 -17.01224 -16.82510 -16.24536 -15.66395 -15.57249 -15.31958 -15.08674 -14.55924 -14.14915 -14.01284 -13.94475 -13.55172 -13.22089 -13.15170 -12.83337 -12.61310 -12.33544 -12.26020 -12.17669 -12.06973 -11.65866 -11.57746 -11.33323 -11.20730 -10.92297 -10.45575 -10.03864 -8.95125 -7.89614 -5.16548 0.13454 0.58388 1.16615 1.48149 1.49331 1.58708 2.12556 2.22321 2.59701 3.17240 3.44641 3.48791 3.88112 3.93831 3.95999 4.01917 4.24994 4.38374 4.39383 4.49169 4.68771 4.69693 4.75347 4.80029 4.91734 5.04488 5.12719 5.23738 5.41473 5.42478 5.44008 5.57365 5.63823 6.33357 6.42506 6.88081 7.13926 7.39130 8.16857 8.38547 9.34284 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.003519 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.403163 B = 7955.893044 C = 8637.781696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.046 0.954 4 C -0.118 4.118 5 C 0.133 3.867 6 N -0.703 5.703 7 C 0.597 3.403 8 O -0.575 6.575 9 C -0.125 4.125 10 C 0.109 3.891 11 N -0.350 5.350 12 C 0.074 3.926 13 N -0.090 5.090 14 N -0.224 5.224 15 N -0.736 5.736 16 C -0.230 4.230 17 H 0.075 0.925 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.297 1.297 23 H -0.295 1.295 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.415 0.585 32 H 0.236 0.764 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.371 0.629 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.222 -0.832 22.826 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.354 5.354 7 C 0.382 3.618 8 O -0.454 6.454 9 C -0.265 4.265 10 C -0.049 4.049 11 N -0.135 5.135 12 C -0.064 4.064 13 N -0.070 5.070 14 N -0.098 5.098 15 N -0.376 5.376 16 C -0.362 4.362 17 H 0.093 0.907 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.225 1.225 23 H -0.222 1.222 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.252 0.748 32 H 0.252 0.748 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.203 0.797 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.860 -0.997 23.223 24.876 hybrid contribution 0.632 0.082 -1.664 1.782 sum 9.492 -0.915 21.559 23.574 Atomic orbital electron populations 1.22268 0.97197 1.00994 1.00906 1.20438 0.93101 0.95277 0.85456 0.93549 1.21933 0.92608 1.02035 0.99072 1.21207 0.95364 0.96434 0.85999 1.45772 1.07041 1.55826 1.26729 1.17099 0.82705 0.78831 0.83148 1.90810 1.56385 1.48083 1.50122 1.21393 0.92226 1.12184 1.00666 1.23832 0.99876 0.93471 0.87767 1.50724 1.09554 1.35905 1.17323 1.22746 0.81904 1.04908 0.96876 1.81883 0.84669 1.21770 1.18726 1.74578 1.27705 1.07114 1.00365 1.42683 1.78346 1.10265 1.06343 1.19647 1.34072 0.94106 0.88358 0.90681 1.25501 1.03419 0.96884 1.01372 1.69830 1.53086 1.10227 1.29100 0.85146 0.76581 0.78305 0.80232 1.18979 1.22505 1.22237 0.93780 0.90660 0.94668 0.91280 0.87882 0.92142 0.93868 0.74782 0.74778 0.87475 0.85210 0.87010 0.79675 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.49 71.98 0.68 -4.51 16 2 C 0.17 6.32 2.89 44.99 0.13 6.45 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 4 C -0.12 -3.61 4.87 30.59 0.15 -3.46 16 5 C 0.13 4.65 5.56 86.38 0.48 5.13 16 6 N -0.70 -21.33 5.55 -466.27 -2.59 -23.92 16 7 C 0.60 19.33 7.82 86.69 0.68 20.01 16 8 O -0.57 -22.48 16.86 -4.01 -0.07 -22.55 16 9 C -0.12 -3.26 6.99 40.81 0.29 -2.98 16 10 C 0.11 1.96 11.31 83.85 0.95 2.91 16 11 N -0.35 -5.29 4.03 -368.60 -1.49 -6.77 16 12 C 0.07 0.22 11.51 127.77 1.47 1.69 16 13 N -0.09 -2.08 13.78 37.02 0.51 -1.57 16 14 N -0.22 -5.98 12.04 -50.00 -0.60 -6.58 16 15 N -0.74 -36.99 4.57 -322.95 -1.48 -38.46 16 16 C -0.23 -12.88 9.93 84.03 0.83 -12.05 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 18 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 19 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 20 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 23 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.04 1.90 7.75 -2.39 -0.02 1.88 16 31 H 0.42 10.66 8.16 -92.71 -0.76 9.91 16 32 H 0.24 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.13 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.37 20.28 7.80 -92.70 -0.72 19.55 16 37 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -78.48 325.91 2.34 -76.14 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.39 Total: 25.97 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 6.13 Total: 8.94 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -5.36 Total: -138.04 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.07 Total: -22.55 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -78.48 2.34 -76.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662914703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.113 kcal (2) G-P(sol) polarization free energy of solvation -78.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds