Wall clock time and date at job start Mon Mar 30 2020 00:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36940 * 119.99940 * 2 1 4 4 H 1.07999 * 120.00171 * 202.35089 * 3 2 1 5 5 C 1.38815 * 119.99808 * 22.33989 * 3 2 1 6 6 N 1.31611 * 119.99860 * 11.35460 * 5 3 2 7 7 Si 1.86802 * 119.99844 * 191.34683 * 5 3 2 8 8 H 1.48505 * 109.46869 * 60.00451 * 7 5 3 9 9 H 1.48504 * 109.47168 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47275 * 300.00511 * 7 5 3 11 11 C 1.46499 * 120.00242 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47433 * 269.99874 * 11 2 1 13 13 N 1.46499 * 109.47433 * 180.02562 * 12 11 2 14 14 C 1.34769 * 120.00014 * 179.97438 * 13 12 11 15 15 O 1.21284 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99826 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47121 * 180.02562 * 17 16 14 19 19 N 1.33250 * 125.52478 * 269.69253 * 18 17 16 20 20 C 1.30829 * 109.82743 * 179.85188 * 19 18 17 21 21 N 1.34437 * 108.08109 * 0.40564 * 20 19 18 22 22 H 0.96994 * 126.82594 * 179.79242 * 21 20 19 23 23 N 1.30713 * 125.52925 * 89.99470 * 18 17 16 24 24 H 1.08999 * 109.47002 * 274.21061 * 1 2 3 25 25 H 1.08992 * 109.47311 * 34.21303 * 1 2 3 26 26 H 1.09002 * 109.46938 * 154.21661 * 1 2 3 27 27 H 0.97001 * 119.99990 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.47097 * 149.99852 * 11 2 1 29 29 H 1.08994 * 109.47350 * 30.00120 * 11 2 1 30 30 H 1.09002 * 109.46997 * 59.99917 * 12 11 2 31 31 H 1.09004 * 109.47024 * 300.00371 * 12 11 2 32 32 H 0.97005 * 119.99612 * 0.02562 * 13 12 11 33 33 H 1.08994 * 109.47593 * 300.00326 * 16 14 13 34 34 H 1.09002 * 109.47042 * 60.00172 * 16 14 13 35 35 H 1.09003 * 109.47217 * 299.99621 * 17 16 14 36 36 H 1.08993 * 109.47184 * 60.00306 * 17 16 14 37 37 H 1.07995 * 125.96166 * 180.12156 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2690 1.0935 7 14 2.3365 4.0048 0.1686 8 1 2.4913 4.2332 -1.2906 9 1 1.4848 5.0736 0.7497 10 1 3.6719 4.0288 0.8178 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 7 3.1857 -2.9781 1.4438 14 6 3.5232 -3.5608 2.6112 15 8 3.2196 -3.0354 3.6613 16 6 4.2768 -4.8659 2.6117 17 6 4.5320 -5.3068 4.0545 18 6 5.2861 -6.6116 4.0550 19 7 4.7347 -7.8246 4.0613 20 6 5.6714 -8.7379 4.0567 21 7 6.8623 -8.1141 4.0562 22 1 7.7375 -8.5322 4.0559 23 7 6.5872 -6.7369 4.0550 24 1 -0.3633 0.0755 1.0249 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3633 -0.9254 -0.4470 27 1 -0.0462 3.0775 1.4131 28 1 3.1499 -1.1385 -0.5134 29 1 1.6085 -2.0286 -0.5129 30 1 1.5002 -1.8399 1.9571 31 1 3.0416 -0.9498 1.9567 32 1 3.4288 -3.3981 0.6039 33 1 3.6876 -5.6259 2.0987 34 1 5.2290 -4.7358 2.0974 35 1 5.1211 -4.5469 4.5679 36 1 3.5797 -5.4371 4.5684 37 1 5.5152 -9.8065 4.0581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663162926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:56 Heat of formation + Delta-G solvation = 66.172866 kcal Electronic energy + Delta-G solvation = -19268.576380 eV Core-core repulsion = 16083.494579 eV Total energy + Delta-G solvation = -3185.081801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.39905 -39.35638 -36.05976 -34.43659 -34.01624 -32.27582 -31.36126 -30.76120 -28.18612 -25.88238 -25.31725 -23.15171 -22.79008 -20.60918 -20.49408 -19.83896 -18.65203 -16.97136 -16.62726 -15.87095 -15.80992 -15.30945 -15.15667 -14.69475 -14.05181 -13.91268 -13.42970 -13.05974 -12.80912 -12.44237 -12.31726 -12.22478 -12.20060 -11.25223 -11.15032 -10.83644 -10.80970 -10.57999 -10.41906 -10.33470 -10.24846 -10.02200 -9.98644 -9.87689 -9.50176 -8.58793 -8.51699 -6.79487 -5.71830 -3.19051 1.28180 2.33526 2.56746 2.95640 3.40577 3.45297 3.46671 3.51113 3.91044 4.39520 4.52539 4.64676 4.85871 5.09769 5.16838 5.43327 5.49208 5.67787 5.80179 5.86300 5.92262 5.93986 6.02962 6.17796 6.31685 6.67617 6.73450 6.76395 6.79365 7.03250 7.39346 7.74456 7.77233 7.82372 7.87310 8.39670 8.57569 9.23645 9.85736 10.33917 11.33267 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042472 B = 0.002841 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.096014 B = 9853.140249 C =10084.698983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.725 5.725 14 C 0.509 3.491 15 O -0.543 6.543 16 C -0.132 4.132 17 C -0.012 4.012 18 C 0.234 3.766 19 N -0.540 5.540 20 C 0.259 3.741 21 N -0.488 5.488 22 H 0.441 0.559 23 N -0.313 5.313 24 H 0.030 0.970 25 H 0.047 0.953 26 H -0.002 1.002 27 H 0.254 0.746 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.395 0.605 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.716 -22.745 2.025 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.376 5.376 14 C 0.294 3.706 15 O -0.420 6.420 16 C -0.174 4.174 17 C -0.052 4.052 18 C -0.048 4.048 19 N -0.268 5.268 20 C -0.040 4.040 21 N -0.206 5.206 22 H 0.286 0.714 23 N -0.142 5.142 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 10.431 -21.601 2.844 24.156 hybrid contribution 1.133 0.049 -0.382 1.197 sum 11.564 -21.552 2.462 24.582 Atomic orbital electron populations 1.20847 0.82155 0.95726 0.99494 1.43923 1.02075 1.00366 1.85597 1.19175 0.98120 0.85249 1.36451 0.91282 1.25070 0.97661 0.98686 0.98122 1.70055 1.17768 1.27353 1.39891 0.86295 0.78579 0.83569 0.77831 1.21031 1.21578 1.20869 1.20992 0.96305 0.88892 0.92254 1.22513 0.95764 0.82884 1.02018 1.46188 1.58221 1.25353 1.07871 1.20445 0.79772 0.86171 0.84239 1.90724 1.54809 1.65183 1.31285 1.21567 1.01804 0.96056 0.97943 1.19685 1.00289 0.88184 0.97091 1.24398 0.88287 0.95175 0.96952 1.70471 1.33317 0.98707 1.24315 1.26143 0.81185 1.00616 0.96052 1.48167 1.10063 1.05091 1.57290 0.71374 1.78073 1.16960 0.92547 1.26630 0.95207 0.93447 0.98384 0.93569 0.93379 0.94000 0.92174 0.91344 0.77193 0.88571 0.88871 0.88542 0.88045 0.76141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.01 59.84 0.54 4.58 16 2 N -0.60 -15.09 2.93 -181.13 -0.53 -15.62 16 3 C -0.26 -7.20 9.67 -15.06 -0.15 -7.34 16 4 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.79 10.58 55.49 0.59 -26.20 16 7 Si 0.91 22.10 29.57 -169.99 -5.03 17.07 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.14 2.87 5.82 -4.04 -0.02 2.84 16 12 C 0.09 1.85 6.00 -4.04 -0.02 1.83 16 13 N -0.73 -10.94 5.56 -60.29 -0.33 -11.28 16 14 C 0.51 7.91 7.83 -10.99 -0.09 7.82 16 15 O -0.54 -10.89 15.98 5.55 0.09 -10.80 16 16 C -0.13 -1.49 5.68 -27.88 -0.16 -1.64 16 17 C -0.01 -0.15 5.13 -27.88 -0.14 -0.29 16 18 C 0.23 2.75 7.39 -156.85 -1.16 1.59 16 19 N -0.54 -5.83 11.19 -11.97 -0.13 -5.96 16 20 C 0.26 1.68 13.13 -90.65 -1.19 0.49 16 21 N -0.49 -3.30 7.45 29.53 0.22 -3.08 16 22 H 0.44 1.25 8.96 -182.34 -1.63 -0.38 16 23 N -0.31 -3.51 12.80 32.42 0.41 -3.10 16 24 H 0.03 0.80 7.42 -51.93 -0.39 0.42 16 25 H 0.05 1.26 7.19 -51.93 -0.37 0.88 16 26 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 29 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.40 4.53 8.47 -40.82 -0.35 4.19 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 37 H 0.22 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -36.52 320.92 -8.83 -45.35 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.47 Total: -1.09 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -2.48 Total: 9.88 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: 0.22 Total: -65.24 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.52 -8.83 -45.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663162926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.523 kcal (2) G-P(sol) polarization free energy of solvation -36.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds