Wall clock time and date at job start Mon Mar 30 2020 00:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36940 * 119.99940 * 2 1 4 4 H 1.07999 * 120.00171 * 202.35089 * 3 2 1 5 5 C 1.38815 * 119.99808 * 22.33989 * 3 2 1 6 6 N 1.31611 * 119.99860 * 11.35460 * 5 3 2 7 7 Si 1.86802 * 119.99844 * 191.34683 * 5 3 2 8 8 H 1.48505 * 109.46869 * 60.00451 * 7 5 3 9 9 H 1.48504 * 109.47168 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47275 * 300.00511 * 7 5 3 11 11 C 1.46499 * 120.00242 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47433 * 269.99874 * 11 2 1 13 13 N 1.46499 * 109.47433 * 180.02562 * 12 11 2 14 14 C 1.34769 * 120.00014 * 179.97438 * 13 12 11 15 15 O 1.21284 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99826 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47121 * 180.02562 * 17 16 14 19 19 N 1.33250 * 125.52478 * 269.69253 * 18 17 16 20 20 C 1.30829 * 109.82743 * 179.85188 * 19 18 17 21 21 N 1.34437 * 108.08109 * 0.40564 * 20 19 18 22 22 H 0.96994 * 126.82594 * 179.79242 * 21 20 19 23 23 N 1.30713 * 125.52925 * 89.99470 * 18 17 16 24 24 H 1.08999 * 109.47002 * 274.21061 * 1 2 3 25 25 H 1.08992 * 109.47311 * 34.21303 * 1 2 3 26 26 H 1.09002 * 109.46938 * 154.21661 * 1 2 3 27 27 H 0.97001 * 119.99990 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.47097 * 149.99852 * 11 2 1 29 29 H 1.08994 * 109.47350 * 30.00120 * 11 2 1 30 30 H 1.09002 * 109.46997 * 59.99917 * 12 11 2 31 31 H 1.09004 * 109.47024 * 300.00371 * 12 11 2 32 32 H 0.97005 * 119.99612 * 0.02562 * 13 12 11 33 33 H 1.08994 * 109.47593 * 300.00326 * 16 14 13 34 34 H 1.09002 * 109.47042 * 60.00172 * 16 14 13 35 35 H 1.09003 * 109.47217 * 299.99621 * 17 16 14 36 36 H 1.08993 * 109.47184 * 60.00306 * 17 16 14 37 37 H 1.07995 * 125.96166 * 180.12156 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2690 1.0935 7 14 2.3365 4.0048 0.1686 8 1 2.4913 4.2332 -1.2906 9 1 1.4848 5.0736 0.7497 10 1 3.6719 4.0288 0.8178 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 7 3.1857 -2.9781 1.4438 14 6 3.5232 -3.5608 2.6112 15 8 3.2196 -3.0354 3.6613 16 6 4.2768 -4.8659 2.6117 17 6 4.5320 -5.3068 4.0545 18 6 5.2861 -6.6116 4.0550 19 7 4.7347 -7.8246 4.0613 20 6 5.6714 -8.7379 4.0567 21 7 6.8623 -8.1141 4.0562 22 1 7.7375 -8.5322 4.0559 23 7 6.5872 -6.7369 4.0550 24 1 -0.3633 0.0755 1.0249 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3633 -0.9254 -0.4470 27 1 -0.0462 3.0775 1.4131 28 1 3.1499 -1.1385 -0.5134 29 1 1.6085 -2.0286 -0.5129 30 1 1.5002 -1.8399 1.9571 31 1 3.0416 -0.9498 1.9567 32 1 3.4288 -3.3981 0.6039 33 1 3.6876 -5.6259 2.0987 34 1 5.2290 -4.7358 2.0974 35 1 5.1211 -4.5469 4.5679 36 1 3.5797 -5.4371 4.5684 37 1 5.5152 -9.8065 4.0581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663162926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:54 Heat of formation + Delta-G solvation = 39.287187 kcal Electronic energy + Delta-G solvation = -19269.742231 eV Core-core repulsion = 16083.494579 eV Total energy + Delta-G solvation = -3186.247652 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -43.05645 -40.69909 -37.86532 -35.73132 -35.23143 -33.30765 -32.94666 -31.66697 -29.79393 -27.92574 -26.51862 -24.61375 -23.59566 -22.36059 -21.52089 -20.96038 -19.23268 -18.80014 -18.05408 -17.02258 -16.90254 -16.68749 -16.28771 -16.07976 -15.57010 -15.20150 -15.09106 -14.55108 -14.25760 -13.87365 -13.74903 -13.25656 -13.08877 -13.08137 -12.75344 -12.61392 -12.48606 -12.16250 -12.09520 -11.99791 -11.75820 -11.11724 -11.04197 -10.95982 -10.65886 -10.62662 -10.02872 -8.85417 -7.84182 -5.33767 0.66336 1.47096 1.49353 1.55991 1.68801 1.80505 1.87933 2.27846 2.53610 3.21567 3.31417 3.66644 3.77288 3.86585 4.12332 4.20843 4.27003 4.33474 4.40733 4.59879 4.69162 4.85998 4.92298 4.99816 5.09517 5.19638 5.26726 5.33514 5.37472 5.52074 5.63870 5.73408 6.29347 6.31872 6.64605 7.12743 7.13485 7.34465 7.84580 8.26880 9.19494 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042472 B = 0.002841 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.096014 B = 9853.140249 C =10084.698983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.267 4.267 4 H 0.076 0.924 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.273 1.273 9 H -0.296 1.296 10 H -0.278 1.278 11 C 0.146 3.854 12 C 0.114 3.886 13 N -0.710 5.710 14 C 0.507 3.493 15 O -0.593 6.593 16 C -0.112 4.112 17 C -0.010 4.010 18 C 0.223 3.777 19 N -0.579 5.579 20 C 0.278 3.722 21 N -0.476 5.476 22 H 0.458 0.542 23 N -0.345 5.345 24 H -0.002 1.002 25 H 0.022 0.978 26 H 0.036 0.964 27 H 0.248 0.752 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.418 0.582 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -25.303 0.624 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.199 1.199 9 H -0.222 1.222 10 H -0.204 1.204 11 C 0.019 3.981 12 C -0.013 4.013 13 N -0.363 5.363 14 C 0.295 3.705 15 O -0.473 6.473 16 C -0.153 4.153 17 C -0.050 4.050 18 C -0.059 4.059 19 N -0.308 5.308 20 C -0.020 4.020 21 N -0.195 5.195 22 H 0.307 0.693 23 N -0.175 5.175 24 H 0.017 0.983 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.255 0.745 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 12.204 -24.232 1.395 27.168 hybrid contribution 0.671 0.661 0.071 0.944 sum 12.875 -23.571 1.466 26.898 Atomic orbital electron populations 1.20604 0.82447 0.96499 0.97491 1.44187 1.02394 1.01661 1.85665 1.19566 0.98375 0.86427 1.35343 0.90606 1.25882 0.98454 1.02218 0.98562 1.70241 1.19296 1.27649 1.41460 0.85277 0.77507 0.79210 0.78050 1.19872 1.22204 1.20352 1.21143 0.97127 0.87537 0.92255 1.21910 0.94240 0.83984 1.01149 1.45897 1.57467 1.23757 1.09183 1.21226 0.78973 0.87100 0.83248 1.90711 1.56728 1.66756 1.33155 1.21465 1.02265 0.93543 0.98042 1.19522 0.99567 0.88663 0.97266 1.24152 0.88506 0.95270 0.98000 1.70437 1.35153 0.98973 1.26234 1.27093 0.79971 1.02018 0.92935 1.48095 1.11348 1.03673 1.56431 0.69285 1.77964 1.16812 0.95234 1.27522 0.98343 0.95948 0.94527 0.94268 0.91703 0.90643 0.94847 0.95309 0.74523 0.86221 0.86749 0.90016 0.89389 0.71029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.74 9.01 127.77 1.15 9.89 16 2 N -0.62 -30.95 2.93 -726.96 -2.13 -33.08 16 3 C -0.27 -14.75 9.67 84.03 0.81 -13.94 16 4 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 5 C -0.06 -3.21 5.13 84.86 0.44 -2.78 16 6 N -0.94 -57.18 10.58 21.65 0.23 -56.95 16 7 Si 0.97 45.88 29.57 68.60 2.03 47.91 16 8 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 C 0.15 5.57 5.82 86.38 0.50 6.08 16 12 C 0.11 4.52 6.00 86.38 0.52 5.03 16 13 N -0.71 -20.45 5.56 -463.06 -2.57 -23.02 16 14 C 0.51 15.51 7.83 87.66 0.69 16.20 16 15 O -0.59 -24.52 15.98 -3.04 -0.05 -24.57 16 16 C -0.11 -2.34 5.68 29.85 0.17 -2.17 16 17 C -0.01 -0.23 5.13 29.85 0.15 -0.08 16 18 C 0.22 4.99 7.39 138.63 1.03 6.01 16 19 N -0.58 -11.35 11.19 -191.80 -2.15 -13.50 16 20 C 0.28 2.67 13.13 180.36 2.37 5.04 16 21 N -0.48 -5.16 7.45 -60.49 -0.45 -5.61 16 22 H 0.46 1.25 8.96 -213.10 -1.91 -0.66 16 23 N -0.34 -7.24 12.80 -51.33 -0.66 -7.89 16 24 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 25 H 0.02 1.19 7.19 -2.39 -0.02 1.17 16 26 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 27 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.06 2.28 8.03 -2.39 -0.02 2.26 16 29 H 0.08 2.40 7.86 -2.39 -0.02 2.38 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.42 8.31 8.47 -92.70 -0.79 7.53 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.14 8.10 -2.39 -0.02 2.12 16 36 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 37 H 0.27 -0.74 8.06 -2.91 -0.02 -0.76 16 Total: -1.00 -82.58 320.92 0.48 -82.10 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -1.60 Total: 5.31 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 7.82 Total: 29.29 kcal Atomic # 7 Polarization: -132.32 SS G_CDS: -7.72 Total: -140.05 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -82.58 0.48 -82.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663162926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.389 kcal (2) G-P(sol) polarization free energy of solvation -82.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds