Wall clock time and date at job start Mon Mar 30 2020 00:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 120.00420 * 2 1 4 4 H 1.07998 * 120.00413 * 202.34577 * 3 2 1 5 5 C 1.38814 * 119.99380 * 22.34003 * 3 2 1 6 6 N 1.31619 * 120.00410 * 11.35923 * 5 3 2 7 7 Si 1.86808 * 119.99768 * 191.35475 * 5 3 2 8 8 H 1.48501 * 109.46899 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46843 * 120.00376 * 7 5 3 10 10 H 1.48500 * 109.46895 * 240.00486 * 7 5 3 11 11 C 1.46508 * 119.99735 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46842 * 269.99592 * 11 2 1 13 13 N 1.46498 * 109.46844 * 180.02562 * 12 11 2 14 14 C 1.34776 * 119.99824 * 180.02562 * 13 12 11 15 15 O 1.21286 * 120.00046 * 359.72584 * 14 13 12 16 16 C 1.50701 * 120.00006 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47184 * 179.72637 * 16 14 13 18 18 C 1.50701 * 109.47184 * 180.02562 * 17 16 14 19 19 C 1.35351 * 126.91011 * 274.68010 * 18 17 16 20 20 N 1.33775 * 106.49725 * 179.90441 * 19 18 17 21 21 N 1.28629 * 108.88182 * 0.36818 * 20 19 18 22 22 N 1.28712 * 110.18201 * 359.76713 * 21 20 19 23 23 H 0.97004 * 125.86979 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.47221 * 274.20689 * 1 2 3 25 25 H 1.09002 * 109.47285 * 34.20751 * 1 2 3 26 26 H 1.09003 * 109.47345 * 154.20876 * 1 2 3 27 27 H 0.97001 * 120.00279 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.46816 * 150.00227 * 11 2 1 29 29 H 1.08995 * 109.47446 * 30.00229 * 11 2 1 30 30 H 1.09004 * 109.46662 * 60.00209 * 12 11 2 31 31 H 1.08997 * 109.47028 * 300.00070 * 12 11 2 32 32 H 0.96999 * 120.00531 * 0.02562 * 13 12 11 33 33 H 1.09007 * 109.46806 * 299.72206 * 16 14 13 34 34 H 1.09001 * 109.47096 * 59.72155 * 16 14 13 35 35 H 1.09007 * 109.46898 * 299.99513 * 17 16 14 36 36 H 1.09001 * 109.47497 * 59.99764 * 17 16 14 37 37 H 1.08002 * 126.74725 * 0.04311 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2690 1.0936 7 14 2.3366 4.0048 0.1684 8 1 3.6137 3.8167 -0.5656 9 1 1.4266 4.8614 -0.6336 10 1 2.6073 4.6571 1.4747 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4418 13 7 3.1854 -2.9795 1.4412 14 6 3.5220 -3.5638 2.6082 15 8 3.2225 -3.0369 3.6587 16 6 4.2766 -4.8683 2.6076 17 6 4.5369 -5.3075 4.0499 18 6 5.2919 -6.6117 4.0494 19 6 4.7654 -7.8557 3.9647 20 7 5.7963 -8.7076 3.9985 21 7 6.8881 -8.0359 4.1053 22 7 6.6321 -6.7750 4.1393 23 1 7.2874 -6.0638 4.2159 24 1 -0.3634 0.0754 1.0249 25 1 -0.3634 0.8499 -0.5777 26 1 -0.3634 -0.9253 -0.4471 27 1 -0.0461 3.0775 1.4133 28 1 3.1499 -1.1382 -0.5143 29 1 1.6084 -2.0282 -0.5147 30 1 1.5000 -1.8416 1.9555 31 1 3.0416 -0.9516 1.9558 32 1 3.4285 -3.3989 0.6010 33 1 3.6862 -5.6292 2.0971 34 1 5.2270 -4.7381 2.0902 35 1 5.1273 -4.5465 4.5604 36 1 3.5864 -5.4377 4.5673 37 1 3.7190 -8.1104 3.8834 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663281228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:48 Heat of formation + Delta-G solvation = 70.770534 kcal Electronic energy + Delta-G solvation = -19328.125040 eV Core-core repulsion = 16143.242609 eV Total energy + Delta-G solvation = -3184.882431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.60690 -39.56135 -36.18086 -34.73096 -34.17632 -33.45099 -31.43441 -30.32716 -28.16906 -25.94679 -25.25064 -23.29948 -23.03586 -21.87736 -20.72636 -20.07343 -18.56339 -17.12417 -16.75302 -16.32712 -15.85609 -15.55933 -14.80122 -14.71289 -14.44682 -14.17059 -13.59351 -13.34497 -13.10094 -12.61144 -12.42243 -12.33595 -12.02582 -11.61868 -11.26331 -11.12088 -10.92966 -10.90668 -10.89254 -10.64614 -10.33285 -10.02916 -9.97945 -9.80027 -9.42078 -8.73491 -8.61334 -6.87771 -5.79603 -3.27103 1.21686 2.24097 2.41163 2.75298 3.31408 3.36356 3.41526 3.43224 4.14884 4.36165 4.45719 4.57532 4.64878 4.92932 4.96847 5.13018 5.23734 5.35572 5.58009 5.62438 5.65668 5.80983 5.83131 5.90743 6.21117 6.49390 6.60673 6.65481 6.67772 6.90373 7.32065 7.66619 7.70489 7.75333 8.13067 8.31152 8.39481 9.15725 9.77732 10.25606 11.25425 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041934 B = 0.002854 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.557417 B = 9808.190647 C =10056.019266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.724 5.724 14 C 0.505 3.495 15 O -0.543 6.543 16 C -0.137 4.137 17 C -0.034 4.034 18 C -0.004 4.004 19 C -0.047 4.047 20 N -0.267 5.267 21 N -0.085 5.085 22 N -0.390 5.390 23 H 0.448 0.552 24 H 0.030 0.970 25 H 0.047 0.953 26 H -0.002 1.002 27 H 0.253 0.747 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.396 0.604 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.268 -15.991 2.075 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.375 5.375 14 C 0.290 3.710 15 O -0.421 6.421 16 C -0.178 4.178 17 C -0.074 4.074 18 C -0.138 4.138 19 C -0.204 4.204 20 N -0.134 5.134 21 N -0.066 5.066 22 N -0.111 5.111 23 H 0.294 0.706 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 8.924 -16.636 2.891 19.098 hybrid contribution 0.054 2.082 -0.361 2.114 sum 8.979 -14.553 2.530 17.286 Atomic orbital electron populations 1.20855 0.82113 0.95792 0.99509 1.43939 1.02099 1.00359 1.85552 1.19254 0.98140 0.85207 1.36391 0.91189 1.25078 0.97641 0.98723 0.98101 1.70074 1.17767 1.27185 1.39943 0.86153 0.78648 0.84053 0.77478 1.20290 1.21523 1.21619 1.20995 0.96348 0.88955 0.92169 1.22549 0.95747 0.82757 1.02184 1.46221 1.58056 1.25317 1.07883 1.20473 0.79943 0.86240 0.84315 1.90737 1.54969 1.65158 1.31231 1.21672 1.01862 0.96346 0.97933 1.19901 1.00776 0.89796 0.96925 1.22400 0.84196 0.99400 1.07770 1.23475 1.00844 0.88416 1.07714 1.75108 0.95202 1.27352 1.15732 1.78295 1.21029 0.87477 1.19758 1.45168 1.07727 1.08866 1.49307 0.70643 0.95197 0.93395 0.98352 0.93630 0.93373 0.93964 0.92125 0.91328 0.77116 0.88268 0.89080 0.89400 0.87646 0.79112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 9.01 59.84 0.54 4.43 16 2 N -0.60 -14.52 2.93 -181.11 -0.53 -15.04 16 3 C -0.26 -6.97 9.67 -15.06 -0.15 -7.12 16 4 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.08 10.59 55.49 0.59 -25.49 16 7 Si 0.91 21.51 29.57 -169.99 -5.03 16.48 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.14 2.70 5.82 -4.04 -0.02 2.67 16 12 C 0.09 1.70 6.00 -4.04 -0.02 1.68 16 13 N -0.72 -9.50 5.56 -60.29 -0.33 -9.83 16 14 C 0.51 6.54 7.83 -10.99 -0.09 6.46 16 15 O -0.54 -9.58 15.98 5.55 0.09 -9.49 16 16 C -0.14 -1.05 5.68 -27.88 -0.16 -1.21 16 17 C -0.03 -0.25 5.07 -27.88 -0.14 -0.40 16 18 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 19 C -0.05 -0.42 11.99 -17.73 -0.21 -0.63 16 20 N -0.27 -3.12 12.41 30.24 0.38 -2.75 16 21 N -0.09 -0.93 13.38 60.35 0.81 -0.12 16 22 N -0.39 -2.95 6.98 33.54 0.23 -2.71 16 23 H 0.45 1.85 8.96 -190.40 -1.71 0.14 16 24 H 0.03 0.78 7.42 -51.93 -0.39 0.40 16 25 H 0.05 1.24 7.19 -51.93 -0.37 0.86 16 26 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 29 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.40 3.81 8.47 -40.82 -0.35 3.47 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.68 8.10 -51.93 -0.42 0.25 16 36 H 0.11 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -34.54 320.23 -6.40 -40.94 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.55 Total: -2.12 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.88 Total: 5.32 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 1.14 Total: -55.95 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.54 -6.40 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663281228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.707 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds