Wall clock time and date at job start Mon Mar 30 2020 00:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 120.00420 * 2 1 4 4 H 1.07998 * 120.00413 * 202.34577 * 3 2 1 5 5 C 1.38814 * 119.99380 * 22.34003 * 3 2 1 6 6 N 1.31619 * 120.00410 * 11.35923 * 5 3 2 7 7 Si 1.86808 * 119.99768 * 191.35475 * 5 3 2 8 8 H 1.48501 * 109.46899 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46843 * 120.00376 * 7 5 3 10 10 H 1.48500 * 109.46895 * 240.00486 * 7 5 3 11 11 C 1.46508 * 119.99735 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46842 * 269.99592 * 11 2 1 13 13 N 1.46498 * 109.46844 * 180.02562 * 12 11 2 14 14 C 1.34776 * 119.99824 * 180.02562 * 13 12 11 15 15 O 1.21286 * 120.00046 * 359.72584 * 14 13 12 16 16 C 1.50701 * 120.00006 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47184 * 179.72637 * 16 14 13 18 18 C 1.50701 * 109.47184 * 180.02562 * 17 16 14 19 19 C 1.35351 * 126.91011 * 274.68010 * 18 17 16 20 20 N 1.33775 * 106.49725 * 179.90441 * 19 18 17 21 21 N 1.28629 * 108.88182 * 0.36818 * 20 19 18 22 22 N 1.28712 * 110.18201 * 359.76713 * 21 20 19 23 23 H 0.97004 * 125.86979 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.47221 * 274.20689 * 1 2 3 25 25 H 1.09002 * 109.47285 * 34.20751 * 1 2 3 26 26 H 1.09003 * 109.47345 * 154.20876 * 1 2 3 27 27 H 0.97001 * 120.00279 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.46816 * 150.00227 * 11 2 1 29 29 H 1.08995 * 109.47446 * 30.00229 * 11 2 1 30 30 H 1.09004 * 109.46662 * 60.00209 * 12 11 2 31 31 H 1.08997 * 109.47028 * 300.00070 * 12 11 2 32 32 H 0.96999 * 120.00531 * 0.02562 * 13 12 11 33 33 H 1.09007 * 109.46806 * 299.72206 * 16 14 13 34 34 H 1.09001 * 109.47096 * 59.72155 * 16 14 13 35 35 H 1.09007 * 109.46898 * 299.99513 * 17 16 14 36 36 H 1.09001 * 109.47497 * 59.99764 * 17 16 14 37 37 H 1.08002 * 126.74725 * 0.04311 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2690 1.0936 7 14 2.3366 4.0048 0.1684 8 1 3.6137 3.8167 -0.5656 9 1 1.4266 4.8614 -0.6336 10 1 2.6073 4.6571 1.4747 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4418 13 7 3.1854 -2.9795 1.4412 14 6 3.5220 -3.5638 2.6082 15 8 3.2225 -3.0369 3.6587 16 6 4.2766 -4.8683 2.6076 17 6 4.5369 -5.3075 4.0499 18 6 5.2919 -6.6117 4.0494 19 6 4.7654 -7.8557 3.9647 20 7 5.7963 -8.7076 3.9985 21 7 6.8881 -8.0359 4.1053 22 7 6.6321 -6.7750 4.1393 23 1 7.2874 -6.0638 4.2159 24 1 -0.3634 0.0754 1.0249 25 1 -0.3634 0.8499 -0.5777 26 1 -0.3634 -0.9253 -0.4471 27 1 -0.0461 3.0775 1.4133 28 1 3.1499 -1.1382 -0.5143 29 1 1.6084 -2.0282 -0.5147 30 1 1.5000 -1.8416 1.9555 31 1 3.0416 -0.9516 1.9558 32 1 3.4285 -3.3989 0.6010 33 1 3.6862 -5.6292 2.0971 34 1 5.2270 -4.7381 2.0902 35 1 5.1273 -4.5465 4.5604 36 1 3.5864 -5.4377 4.5673 37 1 3.7190 -8.1104 3.8834 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663281228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:47 Heat of formation + Delta-G solvation = 44.037990 kcal Electronic energy + Delta-G solvation = -19329.284250 eV Core-core repulsion = 16143.242609 eV Total energy + Delta-G solvation = -3186.041641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.28412 -40.68454 -37.86979 -35.75631 -35.36813 -34.13638 -33.27311 -31.21607 -29.60001 -27.92970 -26.25322 -24.58730 -23.94694 -22.62031 -22.34176 -21.21066 -19.22428 -18.79841 -18.02691 -17.15657 -16.83109 -16.79858 -16.61983 -15.76391 -15.34805 -15.29879 -15.14793 -14.61021 -14.45991 -13.98294 -13.89205 -13.30148 -13.09552 -12.81757 -12.73053 -12.61543 -12.48508 -12.28555 -12.04304 -12.01076 -11.78783 -11.74094 -11.58305 -10.94556 -10.67687 -10.14422 -10.01170 -8.86006 -7.85224 -5.34580 0.56368 1.46141 1.47216 1.54271 1.57450 1.72181 1.85945 2.28185 2.52863 3.30517 3.46313 3.69639 3.82563 3.89945 4.05080 4.20279 4.26089 4.33446 4.39852 4.52126 4.65313 4.69649 4.85528 5.02461 5.07648 5.09894 5.20411 5.23102 5.33388 5.53089 5.63872 5.73130 5.98635 6.31207 6.67180 7.12769 7.37506 7.43866 7.84046 8.26039 9.18619 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041934 B = 0.002854 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.557417 B = 9808.190647 C =10056.019266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.263 4.263 4 H 0.077 0.923 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.969 3.031 8 H -0.263 1.263 9 H -0.290 1.290 10 H -0.296 1.296 11 C 0.145 3.855 12 C 0.115 3.885 13 N -0.712 5.712 14 C 0.503 3.497 15 O -0.594 6.594 16 C -0.122 4.122 17 C -0.027 4.027 18 C 0.010 3.990 19 C -0.052 4.052 20 N -0.303 5.303 21 N -0.112 5.112 22 N -0.375 5.375 23 H 0.462 0.538 24 H -0.001 1.001 25 H 0.020 0.980 26 H 0.036 0.964 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.418 0.582 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -17.276 0.849 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.340 5.340 3 C -0.393 4.393 4 H 0.094 0.906 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.798 3.202 8 H -0.187 1.187 9 H -0.217 1.217 10 H -0.223 1.223 11 C 0.019 3.981 12 C -0.013 4.013 13 N -0.365 5.365 14 C 0.291 3.709 15 O -0.475 6.475 16 C -0.162 4.162 17 C -0.067 4.067 18 C -0.125 4.125 19 C -0.210 4.210 20 N -0.169 5.169 21 N -0.091 5.091 22 N -0.098 5.098 23 H 0.310 0.690 24 H 0.017 0.983 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.255 0.745 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 10.268 -17.981 1.623 20.770 hybrid contribution -0.326 2.413 0.025 2.435 sum 9.942 -15.569 1.648 18.546 Atomic orbital electron populations 1.20602 0.82497 0.96471 0.97496 1.44193 1.02373 1.01724 1.85681 1.19621 0.98305 0.86392 1.35020 0.90559 1.25860 0.98451 1.02133 0.98685 1.70248 1.19308 1.27463 1.41626 0.85168 0.78244 0.79923 0.76901 1.18665 1.21716 1.22328 1.21150 0.97065 0.87453 0.92479 1.21867 0.94288 0.84194 1.00904 1.45940 1.57469 1.23610 1.09461 1.21393 0.79045 0.87364 0.83059 1.90729 1.56892 1.66845 1.33053 1.21647 1.02582 0.93407 0.98567 1.19817 1.00555 0.89447 0.96914 1.22331 0.84047 0.99014 1.07104 1.23957 1.01550 0.88401 1.07108 1.75082 0.96079 1.28647 1.17077 1.78249 1.21209 0.88588 1.21102 1.45198 1.08201 1.08519 1.47915 0.68972 0.98291 0.96083 0.94511 0.94311 0.91764 0.90719 0.94893 0.95314 0.74535 0.85482 0.86424 0.89592 0.87997 0.76883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.41 9.01 127.77 1.15 9.56 16 2 N -0.62 -29.63 2.93 -726.92 -2.13 -31.76 16 3 C -0.26 -14.02 9.67 84.03 0.81 -13.20 16 4 H 0.08 3.88 7.84 -2.91 -0.02 3.86 16 5 C -0.06 -3.13 5.13 84.86 0.44 -2.69 16 6 N -0.94 -55.66 10.59 21.65 0.23 -55.43 16 7 Si 0.97 44.56 29.57 68.60 2.03 46.59 16 8 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 9 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 11 C 0.15 5.14 5.82 86.38 0.50 5.65 16 12 C 0.11 4.11 6.00 86.38 0.52 4.63 16 13 N -0.71 -16.97 5.56 -463.05 -2.57 -19.54 16 14 C 0.50 11.97 7.83 87.66 0.69 12.65 16 15 O -0.59 -20.69 15.98 -3.05 -0.05 -20.74 16 16 C -0.12 -1.40 5.68 29.85 0.17 -1.23 16 17 C -0.03 -0.33 5.07 29.85 0.15 -0.18 16 18 C 0.01 0.13 6.56 41.36 0.27 0.40 16 19 C -0.05 -0.81 11.99 83.73 1.00 0.20 16 20 N -0.30 -6.67 12.41 -58.25 -0.72 -7.40 16 21 N -0.11 -2.28 13.38 37.02 0.50 -1.78 16 22 N -0.38 -4.87 6.98 -47.79 -0.33 -5.20 16 23 H 0.46 2.77 8.96 -219.96 -1.97 0.80 16 24 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 25 H 0.02 1.09 7.19 -2.39 -0.02 1.07 16 26 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 27 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 29 H 0.07 2.19 7.86 -2.39 -0.02 2.17 16 30 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.42 6.39 8.47 -92.71 -0.79 5.60 16 33 H 0.13 0.88 8.14 -2.38 -0.02 0.87 16 34 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 1.13 8.10 -2.38 -0.02 1.11 16 36 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.21 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -77.57 320.23 0.99 -76.58 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -1.66 Total: 2.91 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.70 Total: 15.77 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -5.03 Total: -121.11 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -77.57 0.99 -76.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663281228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.617 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds