Wall clock time and date at job start Mon Mar 30 2020 00:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46947 * 2 1 4 4 H 1.09005 * 109.46953 * 174.08958 * 3 2 1 5 5 C 1.50698 * 109.46978 * 54.09519 * 3 2 1 6 6 H 1.08001 * 119.99566 * 239.99965 * 5 3 2 7 7 C 1.37880 * 120.00377 * 59.99661 * 5 3 2 8 8 N 1.31512 * 119.99703 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00089 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47016 * 59.99806 * 9 7 5 11 11 H 1.48495 * 109.46982 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47087 * 299.99882 * 9 7 5 13 13 N 1.46893 * 109.47184 * 294.08976 * 3 2 1 14 14 C 1.46896 * 111.00408 * 275.78304 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.21553 * 14 13 3 16 16 C 1.35345 * 126.75724 * 94.71325 * 15 14 13 17 17 N 1.35314 * 106.17720 * 179.85331 * 16 15 14 18 18 C 1.46504 * 125.86618 * 180.18513 * 17 16 15 19 19 C 1.50700 * 109.46918 * 125.29421 * 18 17 16 20 20 N 1.34777 * 119.99804 * 179.97438 * 19 18 17 21 21 O 1.21279 * 119.99966 * 0.02562 * 19 18 17 22 22 N 1.28710 * 108.26469 * 0.41445 * 17 16 15 23 23 N 1.28637 * 110.17591 * 359.73665 * 22 17 16 24 24 H 1.08998 * 109.47254 * 178.55561 * 1 2 3 25 25 H 1.09001 * 109.47614 * 58.55569 * 1 2 3 26 26 H 1.09000 * 109.46933 * 298.55472 * 1 2 3 27 27 H 1.09000 * 109.47264 * 120.00419 * 2 1 3 28 28 H 1.09000 * 109.46667 * 239.99998 * 2 1 3 29 29 H 0.97005 * 119.99636 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00024 * 39.74002 * 13 3 2 31 31 H 1.09006 * 109.46730 * 296.21053 * 14 13 3 32 32 H 1.08996 * 109.47238 * 56.20516 * 14 13 3 33 33 H 1.08002 * 126.91211 * 359.97438 * 16 15 14 34 34 H 1.09000 * 109.46714 * 245.28880 * 18 17 16 35 35 H 1.08993 * 109.47062 * 5.29213 * 18 17 16 36 36 H 0.97001 * 120.00130 * 0.02562 * 20 19 18 37 37 H 0.96994 * 119.99827 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1938 1.1508 6 1 0.8149 3.0669 0.9619 7 6 1.6310 1.7665 2.4450 8 7 2.3696 0.7030 2.6750 9 14 0.8641 2.6974 3.8714 10 1 -0.6139 2.6944 3.7270 11 1 1.2375 2.0399 5.1494 12 1 1.3585 4.0977 3.8716 13 7 1.6702 2.0926 -1.2643 14 6 2.6509 1.7939 -2.3164 15 6 2.1912 2.3986 -3.6180 16 6 2.5476 3.6031 -4.1220 17 7 1.8991 3.7243 -5.3034 18 6 1.9813 4.8688 -6.2143 19 6 2.3871 4.3917 -7.5850 20 7 2.5264 5.2761 -8.5924 21 8 2.5874 3.2118 -7.7817 22 7 1.1939 2.6634 -5.4871 23 7 1.3461 1.8529 -4.4998 24 1 -0.3634 -1.0273 -0.0259 25 1 -0.3634 0.5361 -0.8767 26 1 -0.3633 0.4912 0.9027 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.5170 0.4026 3.5855 30 1 0.7403 1.8248 -1.5501 31 1 3.6180 2.2150 -2.0417 32 1 2.7440 0.7139 -2.4303 33 1 3.2168 4.3220 -3.6727 34 1 1.0086 5.3571 -6.2728 35 1 2.7216 5.5769 -5.8421 36 1 2.3658 6.2197 -8.4351 37 1 2.7879 4.9691 -9.4745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663446001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:02 Heat of formation + Delta-G solvation = 65.482307 kcal Electronic energy + Delta-G solvation = -19925.311252 eV Core-core repulsion = 16740.199506 eV Total energy + Delta-G solvation = -3185.111746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.05942 -39.82015 -36.57159 -34.62471 -34.19947 -32.85711 -31.26053 -29.78049 -28.76890 -26.59379 -24.47985 -23.10190 -22.71125 -21.44192 -20.47319 -19.19161 -18.20771 -17.67771 -16.67959 -16.21357 -15.92297 -15.39906 -14.75315 -14.73720 -14.58012 -14.04464 -13.65738 -13.15562 -12.79389 -12.61282 -12.24049 -12.10397 -11.63442 -11.22784 -10.85331 -10.77628 -10.70807 -10.51880 -10.43374 -10.24655 -9.95152 -9.89407 -9.73384 -9.44507 -8.96927 -8.84032 -8.28684 -7.15059 -5.91870 -3.93217 1.71285 2.04125 2.15446 2.85323 2.98148 3.37605 3.41962 3.45036 4.09594 4.25954 4.47665 4.49080 4.65143 5.13379 5.39612 5.40438 5.61626 5.75002 6.15121 6.20495 6.36612 6.45813 6.52494 6.53419 6.56043 6.68684 6.76457 7.05270 7.34623 7.38226 7.60467 7.68188 7.79311 7.94249 8.34538 8.60396 8.68187 8.77040 9.11837 9.69931 11.15214 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038596 B = 0.003567 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.290513 B = 7848.399310 C = 8207.047642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.141 3.859 15 C 0.002 3.998 16 C -0.040 4.040 17 N -0.294 5.294 18 C 0.100 3.900 19 C 0.504 3.496 20 N -0.852 5.852 21 O -0.507 6.507 22 N -0.067 5.067 23 N -0.263 5.263 24 H 0.022 0.978 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.013 0.987 29 H 0.259 0.741 30 H 0.332 0.668 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.191 0.809 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.403 0.597 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 12.382 -18.391 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.312 5.312 14 C 0.009 3.991 15 C -0.135 4.135 16 C -0.190 4.190 17 N -0.089 5.089 18 C -0.026 4.026 19 C 0.286 3.714 20 N -0.418 5.418 21 O -0.379 6.379 22 N -0.046 5.046 23 N -0.132 5.132 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.150 0.850 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.208 0.792 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.232 0.768 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.229 11.334 -18.937 22.104 hybrid contribution 0.201 0.685 0.887 1.139 sum 1.430 12.019 -18.050 21.732 Atomic orbital electron populations 1.21556 0.97670 0.98052 1.01195 1.22102 0.95125 1.01053 1.00280 1.19214 0.96128 0.88758 0.85091 0.94774 1.21011 1.30474 1.11495 0.89712 0.92140 1.24901 0.95609 0.95179 0.98637 1.69880 1.39260 1.24065 1.20357 0.86637 0.79651 0.79952 0.81582 1.20424 1.21562 1.20408 1.60977 1.04167 1.63052 1.02953 1.20171 0.96840 0.97265 0.84811 1.22194 0.99188 0.93344 0.98799 1.23334 1.05085 1.01806 0.88753 1.46641 1.31953 1.15043 1.15243 1.21714 1.06594 0.86488 0.87823 1.20389 0.77702 0.86738 0.86583 1.43695 1.73695 1.11124 1.13264 1.90911 1.47641 1.16300 1.83056 1.78342 1.14797 0.91868 1.19629 1.75094 1.16059 1.22562 0.99448 0.95902 0.95050 0.91682 0.89002 0.96812 0.93099 0.84993 0.90076 0.94179 0.79187 0.85428 0.84685 0.76812 0.76020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.39 37.16 0.35 -2.53 16 2 C -0.15 -3.53 5.50 -26.73 -0.15 -3.68 16 3 C 0.22 5.36 2.33 -68.87 -0.16 5.20 16 4 H 0.03 0.92 7.86 -51.93 -0.41 0.51 16 5 C -0.49 -13.22 7.35 -34.44 -0.25 -13.47 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.56 5.22 -17.82 -0.09 1.47 16 8 N -0.90 -25.33 11.39 55.43 0.63 -24.70 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -14.78 6.24 -109.23 -0.68 -15.46 16 14 C 0.14 2.66 6.04 -4.98 -0.03 2.63 16 15 C 0.00 0.03 6.72 -82.78 -0.56 -0.53 16 16 C -0.04 -0.56 11.50 -17.05 -0.20 -0.76 16 17 N -0.29 -3.90 3.20 -62.44 -0.20 -4.10 16 18 C 0.10 0.68 6.94 -5.19 -0.04 0.64 16 19 C 0.50 4.34 8.11 -10.98 -0.09 4.25 16 20 N -0.85 -3.01 8.87 31.22 0.28 -2.73 16 21 O -0.51 -7.56 16.51 5.56 0.09 -7.47 16 22 N -0.07 -1.19 12.13 60.35 0.73 -0.46 16 23 N -0.26 -5.16 12.41 33.29 0.41 -4.75 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.66 6.42 -51.93 -0.33 0.33 16 26 H 0.06 1.58 7.05 -51.93 -0.37 1.22 16 27 H 0.09 2.46 6.25 -51.93 -0.32 2.13 16 28 H 0.01 0.31 7.24 -51.93 -0.38 -0.07 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.33 7.35 6.55 -39.29 -0.26 7.09 16 31 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 32 H 0.04 0.80 7.23 -51.93 -0.38 0.42 16 33 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.14 0.33 8.07 -51.93 -0.42 -0.09 16 36 H 0.40 -0.13 8.83 -40.82 -0.36 -0.49 16 37 H 0.41 1.32 8.93 -40.82 -0.36 0.96 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -36.66 313.73 -5.06 -41.72 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.82 Total: 3.67 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.21 Total: -6.77 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 1.17 Total: -52.20 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.09 Total: -7.47 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.66 -5.06 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.206 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds