Wall clock time and date at job start Mon Mar 30 2020 00:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46947 * 2 1 4 4 H 1.09005 * 109.46953 * 174.08958 * 3 2 1 5 5 C 1.50698 * 109.46978 * 54.09519 * 3 2 1 6 6 H 1.08001 * 119.99566 * 239.99965 * 5 3 2 7 7 C 1.37880 * 120.00377 * 59.99661 * 5 3 2 8 8 N 1.31512 * 119.99703 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00089 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47016 * 59.99806 * 9 7 5 11 11 H 1.48495 * 109.46982 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47087 * 299.99882 * 9 7 5 13 13 N 1.46893 * 109.47184 * 294.08976 * 3 2 1 14 14 C 1.46896 * 111.00408 * 275.78304 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.21553 * 14 13 3 16 16 C 1.35345 * 126.75724 * 94.71325 * 15 14 13 17 17 N 1.35314 * 106.17720 * 179.85331 * 16 15 14 18 18 C 1.46504 * 125.86618 * 180.18513 * 17 16 15 19 19 C 1.50700 * 109.46918 * 125.29421 * 18 17 16 20 20 N 1.34777 * 119.99804 * 179.97438 * 19 18 17 21 21 O 1.21279 * 119.99966 * 0.02562 * 19 18 17 22 22 N 1.28710 * 108.26469 * 0.41445 * 17 16 15 23 23 N 1.28637 * 110.17591 * 359.73665 * 22 17 16 24 24 H 1.08998 * 109.47254 * 178.55561 * 1 2 3 25 25 H 1.09001 * 109.47614 * 58.55569 * 1 2 3 26 26 H 1.09000 * 109.46933 * 298.55472 * 1 2 3 27 27 H 1.09000 * 109.47264 * 120.00419 * 2 1 3 28 28 H 1.09000 * 109.46667 * 239.99998 * 2 1 3 29 29 H 0.97005 * 119.99636 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00024 * 39.74002 * 13 3 2 31 31 H 1.09006 * 109.46730 * 296.21053 * 14 13 3 32 32 H 1.08996 * 109.47238 * 56.20516 * 14 13 3 33 33 H 1.08002 * 126.91211 * 359.97438 * 16 15 14 34 34 H 1.09000 * 109.46714 * 245.28880 * 18 17 16 35 35 H 1.08993 * 109.47062 * 5.29213 * 18 17 16 36 36 H 0.97001 * 120.00130 * 0.02562 * 20 19 18 37 37 H 0.96994 * 119.99827 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1938 1.1508 6 1 0.8149 3.0669 0.9619 7 6 1.6310 1.7665 2.4450 8 7 2.3696 0.7030 2.6750 9 14 0.8641 2.6974 3.8714 10 1 -0.6139 2.6944 3.7270 11 1 1.2375 2.0399 5.1494 12 1 1.3585 4.0977 3.8716 13 7 1.6702 2.0926 -1.2643 14 6 2.6509 1.7939 -2.3164 15 6 2.1912 2.3986 -3.6180 16 6 2.5476 3.6031 -4.1220 17 7 1.8991 3.7243 -5.3034 18 6 1.9813 4.8688 -6.2143 19 6 2.3871 4.3917 -7.5850 20 7 2.5264 5.2761 -8.5924 21 8 2.5874 3.2118 -7.7817 22 7 1.1939 2.6634 -5.4871 23 7 1.3461 1.8529 -4.4998 24 1 -0.3634 -1.0273 -0.0259 25 1 -0.3634 0.5361 -0.8767 26 1 -0.3633 0.4912 0.9027 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.5170 0.4026 3.5855 30 1 0.7403 1.8248 -1.5501 31 1 3.6180 2.2150 -2.0417 32 1 2.7440 0.7139 -2.4303 33 1 3.2168 4.3220 -3.6727 34 1 1.0086 5.3571 -6.2728 35 1 2.7216 5.5769 -5.8421 36 1 2.3658 6.2197 -8.4351 37 1 2.7879 4.9691 -9.4745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663446001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:02 Heat of formation + Delta-G solvation = 33.759807 kcal Electronic energy + Delta-G solvation = -19926.686843 eV Core-core repulsion = 16740.199506 eV Total energy + Delta-G solvation = -3186.487337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.19889 -40.52398 -38.37431 -35.72861 -34.84948 -34.49715 -33.01194 -31.30479 -29.62406 -28.43782 -26.16553 -24.99219 -23.66545 -22.56474 -21.42977 -21.06819 -18.94670 -18.39792 -18.12202 -17.28297 -16.99213 -16.74568 -16.30726 -16.18079 -15.79482 -15.36332 -14.77990 -14.67050 -14.38638 -14.00430 -13.82520 -13.63477 -13.27806 -12.77852 -12.67596 -12.43732 -12.40171 -11.94866 -11.81633 -11.65523 -11.54788 -11.39017 -10.95495 -10.87050 -10.74675 -10.38019 -10.12820 -8.92907 -8.00226 -6.08470 0.66025 1.35266 1.44625 1.48113 1.49293 1.54832 1.57694 2.42065 2.50741 3.28773 3.35605 3.74149 3.85309 3.91564 4.06316 4.08356 4.26901 4.55165 4.57350 4.62704 4.70700 4.80093 5.01136 5.15351 5.18710 5.39471 5.45604 5.62651 5.68669 5.77101 5.82086 5.87159 6.34892 6.35523 6.69889 6.80446 7.02201 7.23690 7.56519 7.58734 9.05374 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038596 B = 0.003567 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.290513 B = 7848.399310 C = 8207.047642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.140 4.140 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.499 4.499 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.148 3.852 15 C -0.033 4.033 16 C -0.015 4.015 17 N -0.282 5.282 18 C 0.088 3.912 19 C 0.502 3.498 20 N -0.823 5.823 21 O -0.582 6.582 22 N -0.097 5.097 23 N -0.308 5.308 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.259 0.741 30 H 0.328 0.672 31 H 0.094 0.906 32 H 0.023 0.977 33 H 0.236 0.764 34 H 0.162 0.838 35 H 0.190 0.810 36 H 0.425 0.575 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 15.355 -19.097 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.180 4.180 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.538 4.538 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.307 5.307 14 C 0.017 3.983 15 C -0.171 4.171 16 C -0.166 4.166 17 N -0.076 5.076 18 C -0.035 4.035 19 C 0.285 3.715 20 N -0.389 5.389 21 O -0.460 6.460 22 N -0.076 5.076 23 N -0.176 5.176 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.112 0.888 32 H 0.041 0.959 33 H 0.253 0.747 34 H 0.179 0.821 35 H 0.207 0.793 36 H 0.258 0.742 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.145 14.396 -19.709 24.434 hybrid contribution 0.274 -0.104 0.965 1.009 sum 1.419 14.292 -18.744 23.614 Atomic orbital electron populations 1.21436 0.96328 0.99146 1.00595 1.21978 0.96257 1.00522 0.99235 1.18981 0.94309 0.89121 0.86253 0.97357 1.21219 1.30408 1.11434 0.90729 0.92817 1.25588 0.95990 0.95900 1.00924 1.70012 1.40227 1.25211 1.20696 0.85701 0.78893 0.78940 0.78599 1.20015 1.21429 1.19688 1.60884 1.04579 1.62448 1.02752 1.20060 0.96630 0.96602 0.84987 1.22082 1.01018 0.95330 0.98648 1.23886 1.03707 1.00791 0.88178 1.47048 1.29847 1.15110 1.15594 1.22438 1.10237 0.84949 0.85906 1.20738 0.76770 0.86094 0.87903 1.43505 1.71257 1.11785 1.12382 1.90899 1.51474 1.19398 1.84260 1.78227 1.16546 0.93365 1.19477 1.75011 1.17645 1.24395 1.00530 0.94077 0.94047 0.93614 0.91683 0.96071 0.93220 0.85362 0.88774 0.95916 0.74747 0.82090 0.79332 0.74170 0.75584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 9.39 71.98 0.68 -4.64 16 2 C -0.14 -6.90 5.50 30.59 0.17 -6.73 16 3 C 0.22 11.19 2.33 44.17 0.10 11.29 16 4 H 0.01 0.47 7.86 -2.38 -0.02 0.45 16 5 C -0.50 -27.14 7.35 25.60 0.19 -26.96 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.77 5.22 84.66 0.44 1.22 16 8 N -0.92 -52.71 11.39 21.45 0.24 -52.46 16 9 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.68 -29.43 6.24 -499.48 -3.12 -32.55 16 14 C 0.15 5.62 6.04 85.56 0.52 6.14 16 15 C -0.03 -1.14 6.72 41.59 0.28 -0.86 16 16 C -0.01 -0.37 11.50 83.49 0.96 0.59 16 17 N -0.28 -6.79 3.20 -351.47 -1.12 -7.92 16 18 C 0.09 0.83 6.94 85.63 0.59 1.43 16 19 C 0.50 7.45 8.11 87.66 0.71 8.17 16 20 N -0.82 -3.27 8.87 -173.53 -1.54 -4.81 16 21 O -0.58 -17.25 16.51 -3.03 -0.05 -17.30 16 22 N -0.10 -3.40 12.13 37.02 0.45 -2.95 16 23 N -0.31 -12.24 12.41 -48.60 -0.60 -12.84 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.76 6.42 -2.39 -0.02 1.74 16 26 H 0.04 2.22 7.05 -2.39 -0.02 2.20 16 27 H 0.06 3.56 6.25 -2.39 -0.01 3.55 16 28 H 0.02 0.97 7.24 -2.39 -0.02 0.96 16 29 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 30 H 0.33 14.62 6.55 -89.69 -0.59 14.03 16 31 H 0.09 3.25 8.13 -2.38 -0.02 3.23 16 32 H 0.02 0.93 7.23 -2.39 -0.02 0.91 16 33 H 0.24 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.19 -0.27 8.07 -2.39 -0.02 -0.29 16 36 H 0.43 -2.09 8.83 -92.71 -0.82 -2.90 16 37 H 0.41 1.71 8.93 -92.71 -0.83 0.88 16 Total: -1.00 -83.99 313.73 -0.18 -84.17 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -1.11 Total: 11.39 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 4.64 Total: -10.36 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -5.69 Total: -113.52 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.05 Total: -17.30 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -83.99 -0.18 -84.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.930 kcal (2) G-P(sol) polarization free energy of solvation -83.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds