Wall clock time and date at job start Mon Mar 30 2020 00:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46850 * 2 1 4 4 H 1.09004 * 109.47184 * 54.79523 * 3 2 1 5 5 C 1.50697 * 109.46981 * 174.79950 * 3 2 1 6 6 H 1.08005 * 120.00199 * 120.00026 * 5 3 2 7 7 C 1.37875 * 120.00024 * 299.99539 * 5 3 2 8 8 N 1.31519 * 120.00107 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00037 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47077 * 89.99574 * 9 7 5 11 11 H 1.48500 * 109.47182 * 209.99770 * 9 7 5 12 12 H 1.48496 * 109.46995 * 329.99606 * 9 7 5 13 13 N 1.46902 * 109.46903 * 294.80021 * 3 2 1 14 14 C 1.46900 * 111.00137 * 153.75348 * 13 3 2 15 15 C 1.50697 * 109.47183 * 175.86022 * 14 13 3 16 16 C 1.35350 * 126.75155 * 95.24305 * 15 14 13 17 17 N 1.35311 * 106.17621 * 180.12470 * 16 15 14 18 18 C 1.46503 * 125.86981 * 179.90571 * 17 16 15 19 19 C 1.50702 * 109.47117 * 124.71451 * 18 17 16 20 20 N 1.34771 * 120.00077 * 179.72809 * 19 18 17 21 21 O 1.21281 * 119.99742 * 0.02562 * 19 18 17 22 22 N 1.28712 * 108.26284 * 359.63929 * 17 16 15 23 23 N 1.28632 * 110.17843 * 0.23026 * 22 17 16 24 24 H 1.09003 * 109.47019 * 186.19567 * 1 2 3 25 25 H 1.08994 * 109.47379 * 306.19300 * 1 2 3 26 26 H 1.08997 * 109.46923 * 66.19888 * 1 2 3 27 27 H 1.08994 * 109.46890 * 239.99989 * 2 1 3 28 28 H 1.09002 * 109.47030 * 119.99655 * 2 1 3 29 29 H 0.97001 * 119.99824 * 180.02562 * 8 7 5 30 30 H 1.00894 * 111.00466 * 29.79455 * 13 3 2 31 31 H 1.08997 * 109.47424 * 55.85568 * 14 13 3 32 32 H 1.09007 * 109.46814 * 295.85994 * 14 13 3 33 33 H 1.07999 * 126.91467 * 0.02562 * 16 15 14 34 34 H 1.08999 * 109.46935 * 4.72094 * 18 17 16 35 35 H 1.08996 * 109.47255 * 244.71257 * 18 17 16 36 36 H 0.97003 * 120.00361 * 180.28160 * 20 19 18 37 37 H 0.96999 * 119.99823 * 0.27017 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9826 0.8397 5 6 3.5414 1.4445 0.1288 6 1 4.1493 1.8882 -0.6459 7 6 4.1392 0.8800 1.2356 8 7 5.4495 0.8813 1.3477 9 14 3.0878 0.1121 2.5752 10 1 2.8680 -1.3243 2.2695 11 1 3.7808 0.2396 3.8824 12 1 1.7790 0.8106 2.6386 13 7 1.6554 2.0978 -1.2573 14 6 1.5472 3.5522 -1.0813 15 6 1.2518 4.1984 -2.4103 16 6 0.0333 4.5334 -2.8950 17 7 0.2496 5.0794 -4.1140 18 6 -0.7813 5.5910 -5.0206 19 6 -0.4700 7.0212 -5.3793 20 7 -1.2841 7.6997 -6.2118 21 8 0.5162 7.5599 -4.9229 22 7 1.5171 5.0772 -4.3379 23 7 2.1428 4.5583 -3.3409 24 1 -0.3633 -1.0217 0.1109 25 1 -0.3634 0.6068 0.8293 26 1 -0.3633 0.4147 -0.9402 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 5.8700 0.4838 2.1263 30 1 0.7956 1.7122 -1.6178 31 1 2.4864 3.9416 -0.6887 32 1 0.7411 3.7745 -0.3821 33 1 -0.9200 4.3917 -2.4076 34 1 -1.7533 5.5429 -4.5296 35 1 -0.8015 4.9854 -5.9266 36 1 -1.0816 8.6190 -6.4460 37 1 -2.0726 7.2687 -6.5771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663446002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:05 Heat of formation + Delta-G solvation = 75.947793 kcal Electronic energy + Delta-G solvation = -19949.437639 eV Core-core repulsion = 16764.779710 eV Total energy + Delta-G solvation = -3184.657929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -43.04913 -39.81852 -36.74859 -34.64318 -34.20431 -32.83488 -31.83460 -30.22551 -28.80485 -27.25883 -24.81819 -22.74181 -22.42514 -21.34804 -20.47071 -19.81767 -18.22250 -17.69705 -16.67529 -16.63030 -16.12278 -15.43700 -15.16389 -14.81707 -14.31981 -14.15357 -13.90011 -13.58957 -13.01428 -12.87312 -12.45039 -12.18324 -11.81044 -11.57213 -11.36938 -10.90696 -10.73615 -10.57443 -10.32811 -10.24523 -10.22502 -9.96196 -9.82395 -9.40361 -9.16231 -8.89822 -8.44094 -7.31845 -5.94153 -3.91025 1.68443 2.03854 2.15492 2.88473 2.98463 3.30749 3.39962 3.43334 4.06653 4.24153 4.44784 4.47630 4.60552 5.01176 5.23824 5.32375 5.51209 5.65152 5.74340 5.83244 5.96582 6.15046 6.20582 6.32280 6.46653 6.54308 6.61031 6.63100 6.75529 6.77032 6.83377 7.21132 7.68413 7.78608 7.99921 8.30894 8.82733 8.84954 9.22569 9.68140 11.19438 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037960 B = 0.003809 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.447110 B = 7350.102873 C = 7829.325997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.192 3.808 4 H 0.002 0.998 5 C -0.495 4.495 6 H 0.084 0.916 7 C 0.066 3.934 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.666 5.666 14 C 0.147 3.853 15 C 0.010 3.990 16 C -0.062 4.062 17 N -0.294 5.294 18 C 0.100 3.900 19 C 0.503 3.497 20 N -0.852 5.852 21 O -0.504 6.504 22 N -0.066 5.066 23 N -0.241 5.241 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.262 0.738 30 H 0.318 0.682 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.186 0.814 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.408 0.592 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.067 8.955 -12.693 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.083 3.917 4 H 0.020 0.980 5 C -0.534 4.534 6 H 0.102 0.898 7 C -0.135 4.135 8 N -0.539 5.539 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.193 1.193 13 N -0.298 5.298 14 C 0.016 3.984 15 C -0.127 4.127 16 C -0.212 4.212 17 N -0.089 5.089 18 C -0.026 4.026 19 C 0.285 3.715 20 N -0.418 5.418 21 O -0.376 6.376 22 N -0.046 5.046 23 N -0.109 5.109 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.053 0.947 33 H 0.203 0.797 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.240 0.760 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -19.446 9.489 -13.398 25.450 hybrid contribution -2.744 -0.525 1.596 3.217 sum -22.190 8.964 -11.802 26.684 Atomic orbital electron populations 1.21913 0.98271 1.00550 1.00640 1.22130 0.92872 1.00458 1.01918 1.19631 0.97065 0.89167 0.85811 0.98011 1.21094 0.89057 1.37142 1.06071 0.89767 1.24973 0.94729 0.96101 0.97715 1.69899 1.08669 1.45840 1.29515 0.86962 0.80680 0.79746 0.81410 1.20685 1.22570 1.19324 1.60401 1.36444 1.01101 1.31850 1.20105 1.01875 0.89168 0.87258 1.22173 0.88672 1.02788 0.99107 1.23297 1.02012 1.07462 0.88384 1.46669 1.07114 1.41405 1.13687 1.21699 0.90782 0.93872 0.96246 1.20390 0.83539 0.88203 0.79410 1.43696 1.29399 1.18025 1.50704 1.90925 1.26043 1.69089 1.51591 1.78430 0.87383 1.17433 1.21308 1.75198 1.26292 1.11090 0.98297 0.93655 0.93551 0.93202 0.91259 0.92733 0.92802 0.86504 0.88325 0.94690 0.79656 0.84897 0.85447 0.75996 0.76879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.63 37.16 0.36 -2.21 16 2 C -0.14 -2.89 5.01 -26.73 -0.13 -3.02 16 3 C 0.19 4.50 1.62 -68.86 -0.11 4.38 16 4 H 0.00 0.06 6.89 -51.93 -0.36 -0.30 16 5 C -0.50 -14.31 9.19 -34.44 -0.32 -14.63 16 6 H 0.08 2.75 8.06 -52.48 -0.42 2.33 16 7 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 8 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 9 Si 0.88 22.03 24.41 -169.99 -4.15 17.88 16 10 H -0.28 -6.80 6.83 56.52 0.39 -6.41 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 13 N -0.67 -13.84 6.26 -109.22 -0.68 -14.52 16 14 C 0.15 2.80 6.01 -4.98 -0.03 2.77 16 15 C 0.01 0.18 6.80 -82.78 -0.56 -0.38 16 16 C -0.06 -0.81 11.50 -17.05 -0.20 -1.01 16 17 N -0.29 -3.84 3.20 -62.44 -0.20 -4.04 16 18 C 0.10 0.65 6.94 -5.19 -0.04 0.61 16 19 C 0.50 4.31 8.11 -10.99 -0.09 4.23 16 20 N -0.85 -2.95 8.87 31.22 0.28 -2.68 16 21 O -0.50 -7.64 16.51 5.56 0.09 -7.55 16 22 N -0.07 -1.20 12.13 60.35 0.73 -0.47 16 23 N -0.24 -5.00 12.41 33.29 0.41 -4.59 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.71 6.65 -51.93 -0.35 0.37 16 27 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.32 5.67 6.61 -39.29 -0.26 5.41 16 31 H 0.10 2.17 7.98 -51.93 -0.41 1.75 16 32 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 0.25 8.07 -51.93 -0.42 -0.17 16 35 H 0.13 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.41 1.33 8.93 -40.82 -0.36 0.97 16 37 H 0.40 -0.20 8.83 -40.82 -0.36 -0.56 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -40.45 310.77 -4.11 -44.56 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.83 Total: 1.72 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.21 Total: -7.43 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 1.31 Total: -53.87 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.55 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -40.45 -4.11 -44.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.506 kcal (2) G-P(sol) polarization free energy of solvation -40.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds