Wall clock time and date at job start Mon Mar 30 2020 00:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46850 * 2 1 4 4 H 1.09004 * 109.47184 * 54.79523 * 3 2 1 5 5 C 1.50697 * 109.46981 * 174.79950 * 3 2 1 6 6 H 1.08005 * 120.00199 * 120.00026 * 5 3 2 7 7 C 1.37875 * 120.00024 * 299.99539 * 5 3 2 8 8 N 1.31519 * 120.00107 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00037 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47077 * 89.99574 * 9 7 5 11 11 H 1.48500 * 109.47182 * 209.99770 * 9 7 5 12 12 H 1.48496 * 109.46995 * 329.99606 * 9 7 5 13 13 N 1.46902 * 109.46903 * 294.80021 * 3 2 1 14 14 C 1.46900 * 111.00137 * 153.75348 * 13 3 2 15 15 C 1.50697 * 109.47183 * 175.86022 * 14 13 3 16 16 C 1.35350 * 126.75155 * 95.24305 * 15 14 13 17 17 N 1.35311 * 106.17621 * 180.12470 * 16 15 14 18 18 C 1.46503 * 125.86981 * 179.90571 * 17 16 15 19 19 C 1.50702 * 109.47117 * 124.71451 * 18 17 16 20 20 N 1.34771 * 120.00077 * 179.72809 * 19 18 17 21 21 O 1.21281 * 119.99742 * 0.02562 * 19 18 17 22 22 N 1.28712 * 108.26284 * 359.63929 * 17 16 15 23 23 N 1.28632 * 110.17843 * 0.23026 * 22 17 16 24 24 H 1.09003 * 109.47019 * 186.19567 * 1 2 3 25 25 H 1.08994 * 109.47379 * 306.19300 * 1 2 3 26 26 H 1.08997 * 109.46923 * 66.19888 * 1 2 3 27 27 H 1.08994 * 109.46890 * 239.99989 * 2 1 3 28 28 H 1.09002 * 109.47030 * 119.99655 * 2 1 3 29 29 H 0.97001 * 119.99824 * 180.02562 * 8 7 5 30 30 H 1.00894 * 111.00466 * 29.79455 * 13 3 2 31 31 H 1.08997 * 109.47424 * 55.85568 * 14 13 3 32 32 H 1.09007 * 109.46814 * 295.85994 * 14 13 3 33 33 H 1.07999 * 126.91467 * 0.02562 * 16 15 14 34 34 H 1.08999 * 109.46935 * 4.72094 * 18 17 16 35 35 H 1.08996 * 109.47255 * 244.71257 * 18 17 16 36 36 H 0.97003 * 120.00361 * 180.28160 * 20 19 18 37 37 H 0.96999 * 119.99823 * 0.27017 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9826 0.8397 5 6 3.5414 1.4445 0.1288 6 1 4.1493 1.8882 -0.6459 7 6 4.1392 0.8800 1.2356 8 7 5.4495 0.8813 1.3477 9 14 3.0878 0.1121 2.5752 10 1 2.8680 -1.3243 2.2695 11 1 3.7808 0.2396 3.8824 12 1 1.7790 0.8106 2.6386 13 7 1.6554 2.0978 -1.2573 14 6 1.5472 3.5522 -1.0813 15 6 1.2518 4.1984 -2.4103 16 6 0.0333 4.5334 -2.8950 17 7 0.2496 5.0794 -4.1140 18 6 -0.7813 5.5910 -5.0206 19 6 -0.4700 7.0212 -5.3793 20 7 -1.2841 7.6997 -6.2118 21 8 0.5162 7.5599 -4.9229 22 7 1.5171 5.0772 -4.3379 23 7 2.1428 4.5583 -3.3409 24 1 -0.3633 -1.0217 0.1109 25 1 -0.3634 0.6068 0.8293 26 1 -0.3633 0.4147 -0.9402 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 5.8700 0.4838 2.1263 30 1 0.7956 1.7122 -1.6178 31 1 2.4864 3.9416 -0.6887 32 1 0.7411 3.7745 -0.3821 33 1 -0.9200 4.3917 -2.4076 34 1 -1.7533 5.5429 -4.5296 35 1 -0.8015 4.9854 -5.9266 36 1 -1.0816 8.6190 -6.4460 37 1 -2.0726 7.2687 -6.5771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663446002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:04 Heat of formation + Delta-G solvation = 37.432140 kcal Electronic energy + Delta-G solvation = -19951.107803 eV Core-core repulsion = 16764.779710 eV Total energy + Delta-G solvation = -3186.328093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.18117 -40.52091 -38.44062 -35.70818 -34.83923 -34.50012 -33.69102 -31.52834 -29.63065 -29.05750 -26.40065 -24.14470 -23.66347 -22.43829 -21.68413 -21.34540 -18.91850 -18.80316 -18.39872 -17.33518 -17.12149 -16.77877 -16.45004 -16.13274 -15.75325 -15.55100 -14.94738 -14.86042 -14.70722 -14.07957 -13.75484 -13.55559 -13.44391 -13.12442 -12.77750 -12.47815 -12.34092 -12.11803 -11.71324 -11.64261 -11.55195 -11.22396 -11.16073 -10.86061 -10.74659 -10.64794 -10.12077 -8.96762 -8.21958 -6.24858 0.66775 1.32490 1.38240 1.38769 1.45617 1.49406 1.59588 2.36453 2.42895 3.10497 3.35385 3.68841 3.77432 3.88384 4.08514 4.10349 4.23012 4.36312 4.40412 4.48024 4.53235 4.79863 4.91721 4.98306 5.15142 5.17475 5.25365 5.29693 5.50391 5.65044 5.77382 5.82415 6.10973 6.36577 6.54477 6.83766 7.04413 7.24840 7.39624 7.63523 8.96553 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037960 B = 0.003809 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.447110 B = 7350.102873 C = 7829.325997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.199 3.801 4 H 0.006 0.994 5 C -0.504 4.504 6 H 0.020 0.980 7 C 0.000 4.000 8 N -0.958 5.958 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.302 1.302 12 H -0.238 1.238 13 N -0.681 5.681 14 C 0.155 3.845 15 C -0.030 4.030 16 C -0.020 4.020 17 N -0.281 5.281 18 C 0.089 3.911 19 C 0.499 3.501 20 N -0.823 5.823 21 O -0.584 6.584 22 N -0.103 5.103 23 N -0.308 5.308 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.263 0.737 30 H 0.340 0.660 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.248 0.752 34 H 0.194 0.806 35 H 0.162 0.838 36 H 0.411 0.589 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.113 8.267 -12.850 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.090 3.910 4 H 0.024 0.976 5 C -0.542 4.542 6 H 0.039 0.961 7 C -0.196 4.196 8 N -0.600 5.600 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.230 1.230 12 H -0.161 1.161 13 N -0.315 5.315 14 C 0.025 3.975 15 C -0.169 4.169 16 C -0.171 4.171 17 N -0.076 5.076 18 C -0.034 4.034 19 C 0.282 3.718 20 N -0.390 5.390 21 O -0.462 6.462 22 N -0.082 5.082 23 N -0.175 5.175 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.264 0.736 34 H 0.211 0.789 35 H 0.179 0.821 36 H 0.243 0.757 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -25.593 8.822 -13.668 30.326 hybrid contribution -0.925 -0.177 1.432 1.714 sum -26.518 8.645 -12.236 30.458 Atomic orbital electron populations 1.21835 0.93630 1.02551 1.02421 1.22000 0.96946 0.97735 1.00679 1.19389 0.93094 0.91354 0.87183 0.97620 1.21397 0.92259 1.36113 1.04467 0.96144 1.25974 0.96054 0.96774 1.00777 1.70104 1.11298 1.47781 1.30771 0.85730 0.79581 0.79490 0.76827 1.19053 1.23045 1.16096 1.60118 1.38243 1.02345 1.30795 1.19902 1.00604 0.87907 0.89126 1.22135 0.90558 1.05365 0.98850 1.23965 1.02268 1.03547 0.87359 1.47125 1.06726 1.39365 1.14349 1.22452 0.91074 0.92443 0.97432 1.20827 0.82781 0.89065 0.79095 1.43511 1.29007 1.17929 1.48507 1.90917 1.29501 1.70867 1.54949 1.78303 0.89885 1.18824 1.21208 1.75112 1.29095 1.13249 1.00061 0.91410 0.92574 0.90833 0.92458 0.94185 0.92777 0.84008 0.93464 0.90995 0.73623 0.78854 0.82092 0.75668 0.74138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.63 71.98 0.69 -3.39 16 2 C -0.14 -5.46 5.01 30.60 0.15 -5.30 16 3 C 0.20 9.26 1.62 44.17 0.07 9.33 16 4 H 0.01 0.29 6.89 -2.39 -0.02 0.27 16 5 C -0.50 -30.68 9.19 25.60 0.24 -30.44 16 6 H 0.02 1.45 8.06 -2.91 -0.02 1.43 16 7 C 0.00 -0.02 5.45 84.65 0.46 0.45 16 8 N -0.96 -63.66 13.96 21.45 0.30 -63.36 16 9 Si 0.96 45.74 24.41 68.60 1.67 47.41 16 10 H -0.26 -11.91 6.83 99.48 0.68 -11.24 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.24 -10.09 6.53 99.48 0.65 -9.44 16 13 N -0.68 -28.09 6.26 -499.46 -3.13 -31.22 16 14 C 0.16 5.94 6.01 85.56 0.51 6.46 16 15 C -0.03 -1.07 6.80 41.60 0.28 -0.79 16 16 C -0.02 -0.45 11.50 83.49 0.96 0.51 16 17 N -0.28 -6.60 3.20 -351.47 -1.12 -7.72 16 18 C 0.09 0.74 6.94 85.63 0.59 1.33 16 19 C 0.50 7.36 8.11 87.66 0.71 8.07 16 20 N -0.82 -3.07 8.87 -173.54 -1.54 -4.61 16 21 O -0.58 -17.78 16.51 -3.03 -0.05 -17.83 16 22 N -0.10 -3.80 12.13 37.02 0.45 -3.35 16 23 N -0.31 -13.42 12.41 -48.60 -0.60 -14.02 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.69 6.65 -2.39 -0.02 1.67 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.04 1.72 3.21 -2.39 -0.01 1.71 16 29 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 30 H 0.34 11.22 6.61 -89.70 -0.59 10.62 16 31 H 0.05 2.24 7.98 -2.39 -0.02 2.23 16 32 H 0.07 2.17 8.13 -2.38 -0.02 2.15 16 33 H 0.25 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.19 -0.76 8.07 -2.39 -0.02 -0.78 16 35 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.41 1.75 8.93 -92.71 -0.83 0.92 16 37 H 0.43 -2.37 8.83 -92.71 -0.82 -3.18 16 Total: -1.00 -101.96 310.77 -0.54 -102.50 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -1.20 Total: 5.99 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.68 Total: -13.78 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.65 Total: -124.29 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.05 Total: -17.83 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -101.96 -0.54 -102.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.930 kcal (2) G-P(sol) polarization free energy of solvation -101.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds