Wall clock time and date at job start Mon Mar 30 2020 00:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46675 * 2 1 4 4 C 1.46899 * 110.99991 * 287.97868 * 3 2 1 5 5 C 1.50696 * 109.47052 * 160.36620 * 4 3 2 6 6 H 1.08001 * 120.00462 * 4.65983 * 5 4 3 7 7 C 1.37875 * 120.00089 * 184.66625 * 5 4 3 8 8 N 1.31519 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00298 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47184 * 119.99750 * 9 7 5 12 12 H 1.48493 * 109.47341 * 239.99615 * 9 7 5 13 13 C 1.46905 * 110.99786 * 164.02671 * 3 2 1 14 14 C 1.50706 * 109.46847 * 293.95070 * 13 3 2 15 15 C 1.35349 * 126.75011 * 95.24665 * 14 13 3 16 16 N 1.35306 * 106.17670 * 180.12450 * 15 14 13 17 17 C 1.46500 * 125.87087 * 179.90440 * 16 15 14 18 18 C 1.50699 * 109.47201 * 124.71550 * 17 16 15 19 19 N 1.34774 * 120.00050 * 179.72479 * 18 17 16 20 20 O 1.21279 * 119.99725 * 0.02562 * 18 17 16 21 21 N 1.28722 * 108.26209 * 359.64422 * 16 15 14 22 22 N 1.28627 * 110.17427 * 0.22424 * 21 16 15 23 23 H 1.09004 * 109.47458 * 59.36168 * 1 2 3 24 24 H 1.09000 * 109.47326 * 179.36195 * 1 2 3 25 25 H 1.09002 * 109.47235 * 299.35550 * 1 2 3 26 26 H 1.08999 * 109.47125 * 240.00115 * 2 1 3 27 27 H 1.09000 * 109.47259 * 119.99627 * 2 1 3 28 28 H 1.09005 * 109.46998 * 280.36195 * 4 3 2 29 29 H 1.09001 * 109.47050 * 40.36239 * 4 3 2 30 30 H 0.96999 * 120.00473 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47140 * 173.95702 * 13 3 2 32 32 H 1.08992 * 109.47198 * 53.95042 * 13 3 2 33 33 H 1.08006 * 126.91558 * 0.02562 * 15 14 13 34 34 H 1.08997 * 109.46946 * 4.71564 * 17 16 15 35 35 H 1.08998 * 109.47507 * 244.71929 * 17 16 15 36 36 H 0.97007 * 120.00044 * 180.27575 * 19 18 17 37 37 H 0.97001 * 120.00032 * 0.28170 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7959 2.0225 -1.3045 5 6 1.8472 3.5203 -1.1470 6 1 2.1021 3.9545 -0.1915 7 6 1.5685 4.3365 -2.2227 8 7 1.2585 3.8079 -3.3864 9 14 1.6314 6.1932 -2.0274 10 1 2.0014 6.5317 -0.6296 11 1 2.6435 6.7548 -2.9577 12 1 0.2988 6.7692 -2.3395 13 6 3.4382 1.4420 0.3774 14 6 3.5942 1.0065 1.8118 15 6 3.9032 -0.2355 2.2520 16 7 3.9328 -0.1601 3.6026 17 6 4.2244 -1.2663 4.5179 18 6 5.3662 -0.8816 5.4231 19 7 5.8068 -1.7475 6.3572 20 8 5.8849 0.2093 5.3147 21 7 3.6663 1.0518 3.9450 22 7 3.4594 1.7726 2.9000 23 1 -0.3634 0.5237 -0.8842 24 1 -0.3634 -1.0276 -0.0114 25 1 -0.3634 0.5038 0.8957 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.5704 1.7038 -2.0021 29 1 0.8184 1.7307 -1.6886 30 1 1.0620 4.3821 -4.1431 31 1 3.8031 2.4630 0.2660 32 1 4.0128 0.7781 -0.2683 33 1 4.0873 -1.1110 1.6470 34 1 4.4986 -2.1508 3.9431 35 1 3.3413 -1.4830 5.1190 36 1 6.5391 -1.4984 6.9425 37 1 5.3917 -2.6199 6.4441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664147387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:38 Heat of formation + Delta-G solvation = 73.748427 kcal Electronic energy + Delta-G solvation = -20126.483072 eV Core-core repulsion = 16941.729771 eV Total energy + Delta-G solvation = -3184.753300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.01642 -39.79962 -36.98776 -34.52041 -34.14554 -32.57566 -31.49162 -29.88287 -28.77659 -27.03208 -24.81787 -22.81043 -22.44252 -21.42291 -20.74479 -19.58827 -18.14002 -17.65874 -16.57736 -16.39274 -16.03858 -15.41780 -14.89927 -14.67516 -14.39554 -14.03167 -13.90726 -13.47531 -13.30888 -12.82786 -12.12196 -11.75421 -11.57568 -11.20639 -11.05921 -10.94064 -10.75148 -10.68691 -10.50882 -10.33400 -10.22812 -10.17385 -9.82017 -9.57831 -9.17192 -8.80162 -8.31809 -7.17548 -5.92315 -3.92067 1.72841 2.05989 2.19344 2.93286 3.01580 3.41153 3.48417 3.57268 4.09956 4.26671 4.47614 4.54764 4.65858 5.03716 5.17490 5.44141 5.46568 5.69340 5.71871 5.94122 6.11208 6.22098 6.25944 6.34058 6.39716 6.57850 6.60338 6.71407 6.78911 6.86597 7.30122 7.38740 7.70335 7.95133 8.19704 8.27093 8.63832 8.87865 9.17792 9.72177 11.18334 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.004141 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.621062 B = 6759.552490 C = 7438.329094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 N -0.528 5.528 4 C 0.192 3.808 5 C -0.500 4.500 6 H 0.067 0.933 7 C 0.054 3.946 8 N -0.903 5.903 9 Si 0.895 3.105 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.142 3.858 14 C 0.017 3.983 15 C -0.063 4.063 16 N -0.295 5.295 17 C 0.101 3.899 18 C 0.504 3.496 19 N -0.852 5.852 20 O -0.505 6.505 21 N -0.068 5.068 22 N -0.244 5.244 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.022 0.978 27 H 0.055 0.945 28 H -0.010 1.010 29 H 0.039 0.961 30 H 0.259 0.741 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.185 0.815 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.408 0.592 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 -18.815 15.489 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.253 5.253 4 C 0.067 3.933 5 C -0.539 4.539 6 H 0.085 0.915 7 C -0.147 4.147 8 N -0.543 5.543 9 Si 0.723 3.277 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.012 3.988 14 C -0.121 4.121 15 C -0.213 4.213 16 N -0.089 5.089 17 C -0.026 4.026 18 C 0.285 3.715 19 N -0.418 5.418 20 O -0.377 6.377 21 N -0.047 5.047 22 N -0.112 5.112 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.008 0.992 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.202 0.798 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.240 0.760 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.272 -16.753 16.604 24.407 hybrid contribution 0.706 -0.864 -1.085 1.556 sum 6.978 -17.617 15.519 24.493 Atomic orbital electron populations 1.21731 0.95582 0.99709 1.02990 1.22021 0.96079 0.91088 0.98696 1.62090 1.14579 1.14185 1.34484 1.19808 0.96562 0.94392 0.82490 1.21282 1.45486 0.90626 0.96513 0.91494 1.24969 0.95558 0.98927 0.95205 1.69968 1.48270 1.35058 1.01026 0.86470 0.77420 0.85469 0.78322 1.19425 1.21240 1.21172 1.20250 0.90865 1.02452 0.85184 1.22187 1.02633 0.89801 0.97443 1.23301 1.12288 1.02034 0.83628 1.46651 1.47381 1.09190 1.05684 1.21688 0.99570 0.88201 0.93126 1.20395 0.84421 0.85140 0.81549 1.43700 1.40364 1.19518 1.38262 1.90920 1.56781 1.21105 1.68871 1.78408 1.16504 0.87575 1.22192 1.75162 1.15569 1.25230 0.95206 0.91888 0.93854 0.92549 0.96021 0.92698 0.99233 0.94311 0.93148 0.88086 0.94319 0.79760 0.84923 0.85498 0.76021 0.76878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.99 37.16 0.37 -2.11 16 2 C 0.05 0.90 5.55 -3.82 -0.02 0.88 16 3 N -0.53 -11.66 4.37 -237.51 -1.04 -12.70 16 4 C 0.19 5.02 4.59 -4.98 -0.02 4.99 16 5 C -0.50 -14.45 8.61 -34.44 -0.30 -14.74 16 6 H 0.07 1.98 7.66 -52.49 -0.40 1.58 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.14 2.86 5.35 -4.97 -0.03 2.84 16 14 C 0.02 0.31 6.02 -82.78 -0.50 -0.18 16 15 C -0.06 -0.87 10.13 -17.05 -0.17 -1.05 16 16 N -0.29 -3.98 3.20 -62.44 -0.20 -4.18 16 17 C 0.10 0.69 6.94 -5.19 -0.04 0.66 16 18 C 0.50 4.45 8.11 -10.99 -0.09 4.36 16 19 N -0.85 -3.15 8.87 31.22 0.28 -2.87 16 20 O -0.50 -7.74 16.51 5.56 0.09 -7.65 16 21 N -0.07 -1.25 12.13 60.35 0.73 -0.51 16 22 N -0.24 -5.13 12.41 33.29 0.41 -4.72 16 23 H 0.06 1.23 6.52 -51.93 -0.34 0.89 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 27 H 0.05 0.87 5.86 -51.93 -0.30 0.57 16 28 H -0.01 -0.28 8.00 -51.93 -0.42 -0.69 16 29 H 0.04 1.07 6.24 -51.93 -0.32 0.75 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.10 2.28 7.32 -51.93 -0.38 1.89 16 32 H 0.04 0.70 8.12 -51.93 -0.42 0.27 16 33 H 0.19 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.13 0.32 8.07 -51.93 -0.42 -0.10 16 35 H 0.13 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.41 1.40 8.93 -40.82 -0.36 1.04 16 37 H 0.40 -0.10 8.83 -40.82 -0.36 -0.46 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -39.44 316.78 -5.10 -44.54 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -4.97 Total: -4.84 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.89 Total: -2.90 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.92 Total: -51.41 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -39.44 -5.10 -44.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664147387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.290 kcal (2) G-P(sol) polarization free energy of solvation -39.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds