Wall clock time and date at job start Mon Mar 30 2020 00:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46675 * 2 1 4 4 C 1.46899 * 110.99991 * 287.97868 * 3 2 1 5 5 C 1.50696 * 109.47052 * 160.36620 * 4 3 2 6 6 H 1.08001 * 120.00462 * 4.65983 * 5 4 3 7 7 C 1.37875 * 120.00089 * 184.66625 * 5 4 3 8 8 N 1.31519 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00298 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47184 * 119.99750 * 9 7 5 12 12 H 1.48493 * 109.47341 * 239.99615 * 9 7 5 13 13 C 1.46905 * 110.99786 * 164.02671 * 3 2 1 14 14 C 1.50706 * 109.46847 * 293.95070 * 13 3 2 15 15 C 1.35349 * 126.75011 * 95.24665 * 14 13 3 16 16 N 1.35306 * 106.17670 * 180.12450 * 15 14 13 17 17 C 1.46500 * 125.87087 * 179.90440 * 16 15 14 18 18 C 1.50699 * 109.47201 * 124.71550 * 17 16 15 19 19 N 1.34774 * 120.00050 * 179.72479 * 18 17 16 20 20 O 1.21279 * 119.99725 * 0.02562 * 18 17 16 21 21 N 1.28722 * 108.26209 * 359.64422 * 16 15 14 22 22 N 1.28627 * 110.17427 * 0.22424 * 21 16 15 23 23 H 1.09004 * 109.47458 * 59.36168 * 1 2 3 24 24 H 1.09000 * 109.47326 * 179.36195 * 1 2 3 25 25 H 1.09002 * 109.47235 * 299.35550 * 1 2 3 26 26 H 1.08999 * 109.47125 * 240.00115 * 2 1 3 27 27 H 1.09000 * 109.47259 * 119.99627 * 2 1 3 28 28 H 1.09005 * 109.46998 * 280.36195 * 4 3 2 29 29 H 1.09001 * 109.47050 * 40.36239 * 4 3 2 30 30 H 0.96999 * 120.00473 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47140 * 173.95702 * 13 3 2 32 32 H 1.08992 * 109.47198 * 53.95042 * 13 3 2 33 33 H 1.08006 * 126.91558 * 0.02562 * 15 14 13 34 34 H 1.08997 * 109.46946 * 4.71564 * 17 16 15 35 35 H 1.08998 * 109.47507 * 244.71929 * 17 16 15 36 36 H 0.97007 * 120.00044 * 180.27575 * 19 18 17 37 37 H 0.97001 * 120.00032 * 0.28170 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7959 2.0225 -1.3045 5 6 1.8472 3.5203 -1.1470 6 1 2.1021 3.9545 -0.1915 7 6 1.5685 4.3365 -2.2227 8 7 1.2585 3.8079 -3.3864 9 14 1.6314 6.1932 -2.0274 10 1 2.0014 6.5317 -0.6296 11 1 2.6435 6.7548 -2.9577 12 1 0.2988 6.7692 -2.3395 13 6 3.4382 1.4420 0.3774 14 6 3.5942 1.0065 1.8118 15 6 3.9032 -0.2355 2.2520 16 7 3.9328 -0.1601 3.6026 17 6 4.2244 -1.2663 4.5179 18 6 5.3662 -0.8816 5.4231 19 7 5.8068 -1.7475 6.3572 20 8 5.8849 0.2093 5.3147 21 7 3.6663 1.0518 3.9450 22 7 3.4594 1.7726 2.9000 23 1 -0.3634 0.5237 -0.8842 24 1 -0.3634 -1.0276 -0.0114 25 1 -0.3634 0.5038 0.8957 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.5704 1.7038 -2.0021 29 1 0.8184 1.7307 -1.6886 30 1 1.0620 4.3821 -4.1431 31 1 3.8031 2.4630 0.2660 32 1 4.0128 0.7781 -0.2683 33 1 4.0873 -1.1110 1.6470 34 1 4.4986 -2.1508 3.9431 35 1 3.3413 -1.4830 5.1190 36 1 6.5391 -1.4984 6.9425 37 1 5.3917 -2.6199 6.4441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664147387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:38 Heat of formation + Delta-G solvation = 38.807276 kcal Electronic energy + Delta-G solvation = -20127.998234 eV Core-core repulsion = 16941.729771 eV Total energy + Delta-G solvation = -3186.268462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.19487 -40.52076 -38.64066 -35.55012 -34.80779 -34.69130 -32.83083 -31.43500 -29.67819 -28.85698 -26.47726 -24.42120 -23.68173 -22.64249 -21.83256 -20.96424 -18.87127 -18.56237 -18.35466 -17.32333 -17.03005 -16.76417 -16.21192 -16.20485 -15.69541 -15.55581 -15.20531 -14.72024 -14.59411 -14.14761 -13.59265 -13.38296 -13.21570 -12.87941 -12.76689 -12.56218 -12.39017 -12.29336 -12.05693 -11.68512 -11.65215 -11.39639 -11.23901 -10.83991 -10.73945 -10.55415 -10.08971 -8.90107 -8.15884 -6.23593 0.65716 1.37742 1.40156 1.41238 1.45854 1.55947 1.60360 2.42976 2.44037 3.14991 3.34554 3.51329 3.76634 3.87640 4.04159 4.08841 4.21556 4.28047 4.45044 4.59210 4.72411 4.79261 4.94420 5.01559 5.08805 5.21589 5.32430 5.34408 5.43657 5.64347 5.72896 5.82725 6.15402 6.36726 6.44237 6.73368 6.92280 7.24987 7.45186 7.63520 8.94037 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.004141 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.621062 B = 6759.552490 C = 7438.329094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 N -0.546 5.546 4 C 0.210 3.790 5 C -0.518 4.518 6 H 0.049 0.951 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.150 3.850 14 C -0.020 4.020 15 C -0.027 4.027 16 N -0.280 5.280 17 C 0.088 3.912 18 C 0.500 3.500 19 N -0.823 5.823 20 O -0.583 6.583 21 N -0.099 5.099 22 N -0.304 5.304 23 H 0.032 0.968 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.031 0.969 27 H 0.086 0.914 28 H -0.030 1.030 29 H 0.019 0.981 30 H 0.264 0.736 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.240 0.760 34 H 0.192 0.808 35 H 0.162 0.838 36 H 0.412 0.588 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -22.040 16.601 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 N -0.271 5.271 4 C 0.084 3.916 5 C -0.557 4.557 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.202 1.202 13 C 0.021 3.979 14 C -0.158 4.158 15 C -0.178 4.178 16 N -0.075 5.075 17 C -0.035 4.035 18 C 0.283 3.717 19 N -0.390 5.390 20 O -0.461 6.461 21 N -0.078 5.078 22 N -0.171 5.171 23 H 0.051 0.949 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.104 0.896 28 H -0.012 1.012 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.256 0.744 34 H 0.209 0.791 35 H 0.180 0.820 36 H 0.244 0.756 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.530 -20.064 17.795 27.602 hybrid contribution 0.673 -0.064 -1.311 1.475 sum 7.203 -20.128 16.484 26.995 Atomic orbital electron populations 1.21706 0.95344 1.01648 1.00860 1.22140 0.96263 0.88905 1.00500 1.61947 1.16395 1.16993 1.31758 1.19404 0.94644 0.93333 0.84243 1.21511 1.45662 0.92569 0.95919 0.93233 1.25746 0.95080 1.03430 0.94871 1.70055 1.48796 1.36718 1.01653 0.85484 0.77923 0.80089 0.78045 1.19877 1.20061 1.20173 1.20016 0.89761 1.00824 0.87348 1.22007 1.05937 0.91881 0.96007 1.23874 1.08367 1.01635 0.83929 1.47084 1.44604 1.09102 1.06660 1.22445 1.00260 0.87450 0.93309 1.20791 0.84356 0.84457 0.82069 1.43510 1.39526 1.19666 1.36258 1.90912 1.59506 1.24404 1.71290 1.78285 1.18163 0.89644 1.21707 1.75076 1.17734 1.27678 0.96580 0.94896 0.89813 0.93744 0.95045 0.89599 1.01225 0.96306 0.92723 0.92209 0.92064 0.74363 0.79105 0.82025 0.75639 0.74155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.99 71.98 0.72 -3.93 16 2 C 0.05 1.70 5.55 86.30 0.48 2.18 16 3 N -0.55 -24.49 4.37 -905.35 -3.96 -28.45 16 4 C 0.21 11.37 4.59 85.56 0.39 11.77 16 5 C -0.52 -31.17 8.61 25.60 0.22 -30.95 16 6 H 0.05 3.09 7.66 -2.91 -0.02 3.07 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 9 Si 0.96 47.27 29.54 68.60 2.03 49.30 16 10 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 C 0.15 6.14 5.35 85.56 0.46 6.60 16 14 C -0.02 -0.71 6.02 41.60 0.25 -0.46 16 15 C -0.03 -0.65 10.13 83.49 0.85 0.20 16 16 N -0.28 -6.75 3.20 -351.48 -1.12 -7.87 16 17 C 0.09 0.79 6.94 85.63 0.59 1.38 16 18 C 0.50 7.50 8.11 87.66 0.71 8.21 16 19 N -0.82 -3.27 8.87 -173.54 -1.54 -4.81 16 20 O -0.58 -17.72 16.51 -3.03 -0.05 -17.77 16 21 N -0.10 -3.63 12.13 37.02 0.45 -3.18 16 22 N -0.30 -13.12 12.41 -48.60 -0.60 -13.72 16 23 H 0.03 1.28 6.52 -2.38 -0.02 1.27 16 24 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 1.03 8.05 -2.39 -0.02 1.01 16 27 H 0.09 2.41 5.86 -2.39 -0.01 2.39 16 28 H -0.03 -1.70 8.00 -2.38 -0.02 -1.72 16 29 H 0.02 1.09 6.24 -2.39 -0.01 1.07 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.06 2.88 7.32 -2.39 -0.02 2.86 16 32 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 33 H 0.24 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.19 -0.53 8.07 -2.39 -0.02 -0.55 16 35 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.41 1.80 8.93 -92.70 -0.83 0.97 16 37 H 0.43 -2.21 8.83 -92.71 -0.82 -3.03 16 Total: -1.00 -94.35 316.78 0.08 -94.27 By element: Atomic # 1 Polarization: -6.27 SS G_CDS: -0.54 Total: -6.80 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.13 Total: -4.15 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -6.49 Total: -114.85 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.05 Total: -17.77 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -94.35 0.08 -94.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664147387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.076 kcal (2) G-P(sol) polarization free energy of solvation -94.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds