Wall clock time and date at job start Mon Mar 30 2020 00:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47571 * 2 1 4 4 C 1.52999 * 109.46993 * 240.00202 * 2 1 3 5 5 N 1.46501 * 109.47603 * 184.99949 * 4 2 1 6 6 C 1.36929 * 120.00353 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00279 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99968 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99971 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47103 * 60.00146 * 10 8 6 12 12 H 1.48501 * 109.46997 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47087 * 300.00414 * 10 8 6 14 14 N 1.46504 * 109.47139 * 120.00631 * 2 1 3 15 15 C 1.46497 * 120.00335 * 59.99841 * 14 2 1 16 16 C 1.34783 * 119.99382 * 239.99529 * 14 2 1 17 17 O 1.21548 * 120.00360 * 5.33985 * 16 14 2 18 18 C 1.47872 * 119.99264 * 185.33733 * 16 14 2 19 19 N 1.34541 * 126.05440 * 6.28239 * 18 16 14 20 20 C 1.30865 * 107.27427 * 180.02562 * 19 18 16 21 21 N 1.34593 * 107.62349 * 0.02562 * 20 19 18 22 22 C 1.46498 * 125.74901 * 180.02562 * 21 20 19 23 23 N 1.28848 * 108.49912 * 359.72667 * 21 20 19 24 24 H 1.09004 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46603 * 299.99799 * 1 2 3 26 26 H 1.08998 * 109.47546 * 59.99675 * 1 2 3 27 27 H 1.09007 * 109.47036 * 305.00301 * 4 2 1 28 28 H 1.09001 * 109.47245 * 64.99916 * 4 2 1 29 29 H 0.97003 * 119.99472 * 0.02562 * 5 4 2 30 30 H 0.97005 * 120.00173 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.47469 * 95.29827 * 15 14 2 32 32 H 1.09005 * 109.46883 * 335.29742 * 15 14 2 33 33 H 1.09004 * 109.47137 * 215.30230 * 15 14 2 34 34 H 1.08000 * 126.19291 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.47043 * 89.99759 * 22 21 20 36 36 H 1.08998 * 109.46964 * 209.99489 * 22 21 20 37 37 H 1.08995 * 109.47249 * 330.00302 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1837 -1.4388 -2.2069 7 1 3.6466 -1.8440 -3.0517 8 6 5.5671 -1.5380 -2.1516 9 7 6.2217 -1.0438 -1.1222 10 14 6.4999 -2.3728 -3.5382 11 1 6.2424 -1.6533 -4.8115 12 1 7.9546 -2.3488 -3.2409 13 1 6.0440 -3.7805 -3.6642 14 7 2.0183 -0.6908 1.1961 15 6 1.6644 -2.0933 1.4279 16 6 2.7933 -0.0357 2.0833 17 8 3.0072 1.1525 1.9425 18 6 3.3832 -0.7628 3.2279 19 7 3.3264 -2.0907 3.4366 20 6 3.9645 -2.3362 4.5525 21 7 4.4139 -1.1616 5.0319 22 6 5.1823 -0.9785 6.2657 23 7 4.0598 -0.2262 4.2196 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6052 -1.7198 -1.2952 28 1 1.7516 -0.1583 -2.1370 29 1 3.9824 -0.4628 -0.4317 30 1 7.1885 -1.1134 -1.0834 31 1 2.4619 -2.7358 1.0545 32 1 0.7364 -2.3250 0.9052 33 1 1.5316 -2.2627 2.4965 34 1 4.1051 -3.3060 5.0066 35 1 6.2472 -1.0526 6.0449 36 1 4.9659 0.0037 6.6860 37 1 4.9057 -1.7502 6.9839 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666894392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:49 Heat of formation + Delta-G solvation = 90.826424 kcal Electronic energy + Delta-G solvation = -20895.272672 eV Core-core repulsion = 17711.259929 eV Total energy + Delta-G solvation = -3184.012743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.27085 -39.36195 -36.23492 -34.63150 -33.77114 -31.72105 -31.58994 -29.99131 -27.75257 -26.45009 -25.52410 -23.97779 -22.53864 -22.16278 -20.59925 -18.96274 -17.46285 -16.97746 -16.67963 -16.37041 -15.88521 -14.87241 -14.82561 -14.55103 -13.61887 -13.49497 -13.39641 -13.30582 -13.03922 -12.55033 -12.31748 -12.17077 -12.06757 -11.77890 -11.45786 -11.34431 -10.76390 -10.69387 -10.38303 -10.26081 -10.06676 -9.98872 -9.65209 -9.59921 -9.37666 -8.77517 -8.09069 -6.79750 -5.63266 -2.92496 1.62188 2.27315 2.33335 3.30000 3.50248 3.53732 3.55455 3.77134 4.27366 4.34625 4.67384 4.78527 4.82823 5.04884 5.12418 5.33322 5.52905 5.63164 5.70231 5.74066 6.01136 6.11724 6.14783 6.22968 6.29534 6.44689 6.49113 6.53128 6.58809 6.65935 6.84860 7.12497 7.76985 7.78648 8.16306 8.53582 8.61829 9.64739 10.24765 10.59675 11.58777 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.006587 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.101004 B = 4250.051869 C = 5408.320762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.101 0.899 4 C 0.145 3.855 5 N -0.728 5.728 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.929 5.929 10 Si 0.906 3.094 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.578 5.578 15 C 0.089 3.911 16 C 0.616 3.384 17 O -0.524 6.524 18 C 0.159 3.841 19 N -0.473 5.473 20 C 0.181 3.819 21 N -0.309 5.309 22 C 0.088 3.912 23 N -0.257 5.257 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.022 0.978 28 H 0.029 0.971 29 H 0.385 0.615 30 H 0.253 0.747 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.223 0.777 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.270 -3.749 15.721 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.119 0.881 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.310 5.310 15 C -0.054 4.054 16 C 0.400 3.600 17 O -0.397 6.397 18 C -0.121 4.121 19 N -0.198 5.198 20 C -0.114 4.114 21 N -0.105 5.105 22 C -0.053 4.053 23 N -0.095 5.095 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.219 0.781 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.239 0.761 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.146 -2.731 15.317 17.562 hybrid contribution 1.128 -0.837 -0.241 1.425 sum -7.018 -3.568 15.077 17.008 Atomic orbital electron populations 1.22065 0.94954 1.02179 1.02127 1.21468 0.93464 0.98449 0.84217 0.88109 1.21016 0.87110 0.96867 0.93413 1.42291 0.99716 1.70095 1.25099 1.19161 0.89396 1.29341 0.99036 0.91300 1.24749 0.96468 1.01785 0.97999 1.69696 1.07035 1.50833 1.30224 0.86285 0.78979 0.79243 0.81760 1.21319 1.21842 1.21379 1.47365 1.49155 1.12976 1.21517 1.21909 1.00468 0.80958 1.02079 1.16251 0.78423 0.85254 0.80083 1.90790 1.60218 1.14255 1.74457 1.23721 1.02539 0.88327 0.97476 1.71521 1.20458 1.13831 1.13983 1.26559 0.97830 0.93483 0.93526 1.47346 1.38843 1.05167 1.19105 1.22181 0.96149 1.05437 0.81571 1.74327 1.14900 1.17526 1.02786 0.92203 0.92549 0.91265 0.96006 0.95298 0.78054 0.93674 0.91479 0.92040 0.90216 0.76075 0.89262 0.88415 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.18 37.16 0.34 -1.80 16 2 C 0.13 2.37 2.79 -67.93 -0.19 2.18 16 3 H 0.10 2.10 6.91 -51.93 -0.36 1.74 16 4 C 0.14 3.09 5.55 -4.04 -0.02 3.07 16 5 N -0.73 -19.89 5.43 -59.91 -0.33 -20.22 16 6 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -29.99 13.06 55.49 0.72 -29.26 16 10 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 N -0.58 -11.09 2.24 -175.03 -0.39 -11.48 16 15 C 0.09 1.46 8.41 59.85 0.50 1.96 16 16 C 0.62 13.33 7.38 -12.31 -0.09 13.24 16 17 O -0.52 -12.83 16.43 5.32 0.09 -12.74 16 18 C 0.16 3.11 7.57 -156.36 -1.18 1.93 16 19 N -0.47 -7.81 8.14 -12.36 -0.10 -7.92 16 20 C 0.18 2.17 12.62 -90.48 -1.14 1.03 16 21 N -0.31 -3.89 3.72 -69.39 -0.26 -4.15 16 22 C 0.09 0.55 11.38 59.85 0.68 1.23 16 23 N -0.26 -4.62 12.09 32.07 0.39 -4.24 16 24 H 0.06 0.75 6.67 -51.93 -0.35 0.40 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.02 0.46 7.84 -51.92 -0.41 0.05 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.39 11.56 7.06 -40.82 -0.29 11.27 16 30 H 0.25 7.92 8.31 -40.82 -0.34 7.58 16 31 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 32 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 33 H 0.08 1.21 5.92 -51.93 -0.31 0.91 16 34 H 0.22 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -39.34 314.37 -6.48 -45.82 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.97 Total: 5.96 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: -1.35 Total: 15.16 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: 0.04 Total: -77.26 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -39.34 -6.48 -45.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666894392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.651 kcal (2) G-P(sol) polarization free energy of solvation -39.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds