Wall clock time and date at job start Mon Mar 30 2020 00:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47571 * 2 1 4 4 C 1.52999 * 109.46993 * 240.00202 * 2 1 3 5 5 N 1.46501 * 109.47603 * 184.99949 * 4 2 1 6 6 C 1.36929 * 120.00353 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00279 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99968 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99971 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47103 * 60.00146 * 10 8 6 12 12 H 1.48501 * 109.46997 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47087 * 300.00414 * 10 8 6 14 14 N 1.46504 * 109.47139 * 120.00631 * 2 1 3 15 15 C 1.46497 * 120.00335 * 59.99841 * 14 2 1 16 16 C 1.34783 * 119.99382 * 239.99529 * 14 2 1 17 17 O 1.21548 * 120.00360 * 5.33985 * 16 14 2 18 18 C 1.47872 * 119.99264 * 185.33733 * 16 14 2 19 19 N 1.34541 * 126.05440 * 6.28239 * 18 16 14 20 20 C 1.30865 * 107.27427 * 180.02562 * 19 18 16 21 21 N 1.34593 * 107.62349 * 0.02562 * 20 19 18 22 22 C 1.46498 * 125.74901 * 180.02562 * 21 20 19 23 23 N 1.28848 * 108.49912 * 359.72667 * 21 20 19 24 24 H 1.09004 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46603 * 299.99799 * 1 2 3 26 26 H 1.08998 * 109.47546 * 59.99675 * 1 2 3 27 27 H 1.09007 * 109.47036 * 305.00301 * 4 2 1 28 28 H 1.09001 * 109.47245 * 64.99916 * 4 2 1 29 29 H 0.97003 * 119.99472 * 0.02562 * 5 4 2 30 30 H 0.97005 * 120.00173 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.47469 * 95.29827 * 15 14 2 32 32 H 1.09005 * 109.46883 * 335.29742 * 15 14 2 33 33 H 1.09004 * 109.47137 * 215.30230 * 15 14 2 34 34 H 1.08000 * 126.19291 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.47043 * 89.99759 * 22 21 20 36 36 H 1.08998 * 109.46964 * 209.99489 * 22 21 20 37 37 H 1.08995 * 109.47249 * 330.00302 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1837 -1.4388 -2.2069 7 1 3.6466 -1.8440 -3.0517 8 6 5.5671 -1.5380 -2.1516 9 7 6.2217 -1.0438 -1.1222 10 14 6.4999 -2.3728 -3.5382 11 1 6.2424 -1.6533 -4.8115 12 1 7.9546 -2.3488 -3.2409 13 1 6.0440 -3.7805 -3.6642 14 7 2.0183 -0.6908 1.1961 15 6 1.6644 -2.0933 1.4279 16 6 2.7933 -0.0357 2.0833 17 8 3.0072 1.1525 1.9425 18 6 3.3832 -0.7628 3.2279 19 7 3.3264 -2.0907 3.4366 20 6 3.9645 -2.3362 4.5525 21 7 4.4139 -1.1616 5.0319 22 6 5.1823 -0.9785 6.2657 23 7 4.0598 -0.2262 4.2196 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6052 -1.7198 -1.2952 28 1 1.7516 -0.1583 -2.1370 29 1 3.9824 -0.4628 -0.4317 30 1 7.1885 -1.1134 -1.0834 31 1 2.4619 -2.7358 1.0545 32 1 0.7364 -2.3250 0.9052 33 1 1.5316 -2.2627 2.4965 34 1 4.1051 -3.3060 5.0066 35 1 6.2472 -1.0526 6.0449 36 1 4.9659 0.0037 6.6860 37 1 4.9057 -1.7502 6.9839 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666894392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:49 Heat of formation + Delta-G solvation = 62.206228 kcal Electronic energy + Delta-G solvation = -20896.513737 eV Core-core repulsion = 17711.259929 eV Total energy + Delta-G solvation = -3185.253808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.39679 -40.91452 -37.89975 -35.99308 -35.43437 -33.46153 -32.73687 -31.82843 -28.64618 -27.84624 -27.36518 -25.30004 -24.38749 -23.32699 -21.97606 -20.43860 -19.12149 -18.71050 -17.85318 -17.68479 -17.18701 -16.64521 -16.33056 -15.91065 -15.39681 -15.19438 -14.84940 -14.23347 -14.06698 -13.96079 -13.78724 -13.70612 -13.29356 -13.16708 -12.99081 -12.74071 -12.62355 -12.52656 -12.18311 -11.81593 -11.73869 -11.42616 -11.38010 -11.12382 -10.93951 -10.52009 -9.61566 -9.00595 -7.92888 -5.23654 0.34432 1.17890 1.36525 1.43982 1.49246 1.54950 1.99880 2.29495 2.55697 3.10186 3.39645 3.46922 3.78906 3.92221 4.08761 4.30466 4.35070 4.38583 4.41047 4.47268 4.68005 4.75594 4.82526 4.88539 4.90783 4.95952 5.12158 5.18677 5.33113 5.40875 5.47058 5.61011 5.76305 6.24983 6.28950 6.90285 7.15773 7.31210 8.07794 8.31426 9.30357 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.006587 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.101004 B = 4250.051869 C = 5408.320762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.127 3.873 3 H 0.070 0.930 4 C 0.143 3.857 5 N -0.744 5.744 6 C -0.242 4.242 7 H 0.082 0.918 8 C -0.082 4.082 9 N -0.974 5.974 10 Si 0.980 3.020 11 H -0.276 1.276 12 H -0.299 1.299 13 H -0.273 1.273 14 N -0.575 5.575 15 C 0.096 3.904 16 C 0.602 3.398 17 O -0.573 6.573 18 C 0.123 3.877 19 N -0.499 5.499 20 C 0.199 3.801 21 N -0.301 5.301 22 C 0.075 3.925 23 N -0.289 5.289 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.367 0.633 30 H 0.247 0.753 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.282 0.718 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.274 -6.032 16.340 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.088 0.912 4 C 0.016 3.984 5 N -0.386 5.386 6 C -0.374 4.374 7 H 0.100 0.900 8 C -0.273 4.273 9 N -0.625 5.625 10 Si 0.808 3.192 11 H -0.202 1.202 12 H -0.225 1.225 13 H -0.199 1.199 14 N -0.306 5.306 15 C -0.046 4.046 16 C 0.387 3.613 17 O -0.451 6.451 18 C -0.156 4.156 19 N -0.225 5.225 20 C -0.096 4.096 21 N -0.096 5.096 22 C -0.064 4.064 23 N -0.131 5.131 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.198 0.802 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.298 0.702 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.213 -5.054 15.929 19.083 hybrid contribution 1.444 -0.161 -0.314 1.487 sum -7.769 -5.215 15.615 18.204 Atomic orbital electron populations 1.21987 0.90563 1.03942 1.03452 1.21471 0.96657 0.96356 0.83079 0.91170 1.21240 0.84012 0.98045 0.95128 1.42542 1.02130 1.69867 1.24069 1.19662 0.89972 1.28264 0.99490 0.89993 1.25687 0.97622 1.03260 1.00774 1.69914 1.06734 1.53078 1.32751 0.85115 0.76798 0.78639 0.78600 1.20227 1.22534 1.19866 1.47516 1.48279 1.13858 1.20918 1.21953 1.00495 0.78787 1.03352 1.16770 0.78302 0.85111 0.81080 1.90728 1.62060 1.16286 1.76005 1.23388 1.04685 0.89632 0.97900 1.71409 1.22357 1.12373 1.16369 1.27629 0.95057 0.95030 0.91843 1.47805 1.37914 1.04500 1.19430 1.22753 0.96078 1.07517 0.80004 1.74214 1.15415 1.19923 1.03514 0.90111 0.91879 0.89347 0.94305 0.94381 0.80180 0.94433 0.94382 0.89011 0.88875 0.70229 0.88328 0.88372 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.18 71.98 0.66 -2.96 16 2 C 0.13 4.79 2.79 44.99 0.13 4.92 16 3 H 0.07 3.07 6.91 -2.39 -0.02 3.06 16 4 C 0.14 6.06 5.55 86.38 0.48 6.54 16 5 N -0.74 -41.54 5.43 -343.45 -1.87 -43.41 16 6 C -0.24 -14.33 9.99 84.04 0.84 -13.49 16 7 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 8 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 9 N -0.97 -64.79 13.06 21.65 0.28 -64.51 16 10 Si 0.98 48.43 29.55 68.60 2.03 50.46 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 13 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 14 N -0.57 -22.55 2.24 -825.96 -1.85 -24.41 16 15 C 0.10 3.11 8.41 127.77 1.07 4.18 16 16 C 0.60 27.46 7.38 86.79 0.64 28.10 16 17 O -0.57 -30.17 16.43 -3.87 -0.06 -30.23 16 18 C 0.12 4.95 7.57 137.13 1.04 5.99 16 19 N -0.50 -16.28 8.14 -193.03 -1.57 -17.85 16 20 C 0.20 4.28 12.62 180.30 2.27 6.55 16 21 N -0.30 -7.13 3.72 -373.46 -1.39 -8.52 16 22 C 0.07 0.74 11.38 127.77 1.45 2.20 16 23 N -0.29 -10.66 12.09 -52.44 -0.63 -11.30 16 24 H 0.08 1.74 6.67 -2.38 -0.02 1.73 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.54 7.84 -2.38 -0.02 1.52 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.37 23.03 7.06 -92.71 -0.65 22.37 16 30 H 0.25 15.95 8.31 -92.70 -0.77 15.18 16 31 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.09 2.34 6.44 -2.38 -0.02 2.33 16 33 H 0.09 2.77 5.92 -2.39 -0.01 2.76 16 34 H 0.28 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -91.55 314.37 4.42 -87.13 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.43 Total: 25.16 kcal Atomic # 6 Polarization: 28.42 SS G_CDS: 9.06 Total: 37.48 kcal Atomic # 7 Polarization: -162.96 SS G_CDS: -7.03 Total: -169.99 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.06 Total: -30.23 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -91.55 4.42 -87.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666894392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.337 kcal (2) G-P(sol) polarization free energy of solvation -91.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds