Wall clock time and date at job start Mon Mar 30 2020 00:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 N 1.46500 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00028 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00161 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00306 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99993 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47044 * 90.00125 * 11 9 7 13 13 H 1.48500 * 109.47460 * 210.00619 * 11 9 7 14 14 H 1.48509 * 109.47074 * 330.00255 * 11 9 7 15 15 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 16 16 C 1.34779 * 119.99965 * 85.00573 * 15 2 1 17 17 O 1.21552 * 119.99807 * 359.97438 * 16 15 2 18 18 C 1.47870 * 119.99842 * 179.97438 * 16 15 2 19 19 N 1.34551 * 126.04788 * 0.02562 * 18 16 15 20 20 C 1.30875 * 107.27017 * 179.97438 * 19 18 16 21 21 N 1.34587 * 107.62098 * 0.02562 * 20 19 18 22 22 C 1.46503 * 125.74499 * 180.02562 * 21 20 19 23 23 N 1.28848 * 108.50521 * 359.72790 * 21 20 19 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 28 28 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 29 29 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 30 30 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 31 31 H 0.96997 * 119.99983 * 0.02562 * 6 5 4 32 32 H 0.96997 * 119.99879 * 179.97438 * 10 9 7 33 33 H 0.97003 * 119.99991 * 264.99646 * 15 2 1 34 34 H 1.07991 * 126.19210 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.47100 * 90.00100 * 22 21 20 36 36 H 1.09002 * 109.47142 * 209.99680 * 22 21 20 37 37 H 1.08993 * 109.47003 * 329.99673 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3952 -1.3405 2.7796 8 1 6.0937 -0.8598 2.1106 9 6 5.8580 -1.9957 3.9124 10 7 7.1478 -2.0300 4.1721 11 14 4.6499 -2.8278 5.0691 12 1 4.4450 -4.2352 4.6420 13 1 5.1916 -2.8038 6.4516 14 1 3.3527 -2.1057 5.0332 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8577 1.1610 -2.4117 18 6 2.6406 -0.7152 -3.5643 19 7 2.9938 -2.0113 -3.6415 20 6 3.3723 -2.2381 -4.8736 21 7 3.2533 -1.0838 -5.5554 22 6 3.5713 -0.8901 -6.9723 23 7 2.8066 -0.1794 -4.7537 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2057 29 1 3.9994 -1.0728 0.4260 30 1 3.8532 0.4369 1.3574 31 1 3.4259 -1.7365 3.1103 32 1 7.4711 -2.4875 4.9639 33 1 2.2491 -1.6318 -1.1525 34 1 3.7176 -3.1808 -5.2713 35 1 2.6846 -1.0895 -7.5743 36 1 3.8968 0.1375 -7.1345 37 1 4.3688 -1.5739 -7.2625 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668049695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:47 Heat of formation + Delta-G solvation = 68.444950 kcal Electronic energy + Delta-G solvation = -19767.605100 eV Core-core repulsion = 16582.621823 eV Total energy + Delta-G solvation = -3184.983276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.62227 -39.60071 -36.57189 -34.85468 -34.44012 -31.96623 -31.91277 -30.88271 -28.28156 -28.00478 -24.57214 -23.69547 -22.56358 -21.36328 -20.86415 -20.40798 -18.36241 -17.49024 -17.00468 -16.56492 -16.33904 -15.25767 -14.87362 -14.47928 -14.07363 -14.04749 -13.72756 -13.57243 -13.45283 -13.26212 -12.57641 -12.50074 -12.15694 -11.99177 -11.47613 -11.17337 -10.86698 -10.70235 -10.66352 -10.62834 -10.45899 -10.15931 -10.09967 -9.77026 -9.54749 -9.01490 -8.83220 -7.18204 -5.72177 -3.07561 1.24334 1.93114 1.94392 3.03691 3.36493 3.40780 3.43247 3.48280 3.94968 4.09916 4.51823 4.56159 4.63168 4.77081 4.85095 4.90003 5.20308 5.31868 5.55793 5.68311 5.68927 5.76382 5.85019 5.98711 5.99309 6.09189 6.20033 6.23935 6.27915 6.51561 6.79403 6.82324 7.45917 7.85373 8.04897 8.21506 8.46853 9.26296 9.98453 10.18567 11.46459 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.004008 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.203229 B = 6984.190531 C = 7822.101269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.156 3.844 6 N -0.757 5.757 7 C -0.242 4.242 8 H 0.089 0.911 9 C 0.002 3.998 10 N -0.936 5.936 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.698 5.698 16 C 0.617 3.383 17 O -0.523 6.523 18 C 0.145 3.855 19 N -0.481 5.481 20 C 0.191 3.809 21 N -0.308 5.308 22 C 0.086 3.914 23 N -0.255 5.255 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.412 0.588 34 H 0.227 0.773 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 -1.033 -22.089 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.111 0.889 4 C -0.177 4.177 5 C 0.029 3.971 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.350 5.350 16 C 0.398 3.602 17 O -0.396 6.396 18 C -0.135 4.135 19 N -0.206 5.206 20 C -0.104 4.104 21 N -0.103 5.103 22 C -0.055 4.055 23 N -0.094 5.094 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.248 0.752 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.288 0.323 -21.996 25.198 hybrid contribution -0.357 -1.428 0.533 1.565 sum -12.646 -1.104 -21.463 24.936 Atomic orbital electron populations 1.22178 0.95147 1.02187 1.02505 1.21043 0.93765 0.97831 0.83124 0.88871 1.22116 0.98125 1.00972 0.96480 1.20639 0.90176 0.96034 0.90258 1.42707 1.05275 1.66256 1.26016 1.19078 0.82227 1.29136 1.06780 0.89310 1.24681 0.95622 1.00771 0.98248 1.69708 1.11750 1.48332 1.28621 0.86513 0.80953 0.79804 0.81056 1.21096 1.21788 1.20305 1.45813 1.65864 1.14821 1.08514 1.16249 0.77735 0.85263 0.80940 1.90814 1.49914 1.14622 1.84256 1.23805 1.06531 0.89290 0.93826 1.71305 1.16980 1.14504 1.17842 1.26521 1.02006 0.93767 0.88152 1.47401 1.44260 1.07159 1.11500 1.22243 1.03105 1.05953 0.74164 1.74335 1.15699 1.17835 1.01513 0.92218 0.92382 0.91320 0.90056 0.91195 0.95325 0.95523 0.80709 0.93112 0.75210 0.75677 0.89195 0.88172 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 37.16 0.35 -1.53 16 2 C 0.15 2.03 2.57 -67.93 -0.17 1.85 16 3 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.14 -2.08 4.87 -26.73 -0.13 -2.21 16 5 C 0.16 3.12 6.15 -4.04 -0.02 3.09 16 6 N -0.76 -18.50 5.41 -59.91 -0.32 -18.83 16 7 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 10 N -0.94 -30.02 13.97 55.49 0.78 -29.25 16 11 Si 0.89 22.42 27.74 -169.99 -4.71 17.70 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 15 N -0.70 -9.97 4.53 -54.74 -0.25 -10.21 16 16 C 0.62 9.98 7.80 -12.32 -0.10 9.88 16 17 O -0.52 -9.82 16.75 5.32 0.09 -9.73 16 18 C 0.15 2.17 7.96 -156.35 -1.24 0.93 16 19 N -0.48 -6.23 11.09 -12.36 -0.14 -6.37 16 20 C 0.19 1.66 12.62 -90.48 -1.14 0.52 16 21 N -0.31 -2.79 3.72 -69.39 -0.26 -3.05 16 22 C 0.09 0.28 11.38 59.85 0.68 0.96 16 23 N -0.25 -3.52 12.08 32.07 0.39 -3.13 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.59 7.75 -51.93 -0.40 0.19 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 32 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 33 H 0.41 5.57 8.31 -40.82 -0.34 5.23 16 34 H 0.23 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -38.56 321.68 -6.79 -45.35 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.18 Total: 6.46 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -2.03 Total: 6.21 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: 0.20 Total: -70.84 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -38.56 -6.79 -45.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668049695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.794 kcal (2) G-P(sol) polarization free energy of solvation -38.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds