Wall clock time and date at job start Mon Mar 30 2020 00:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 N 1.46500 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00028 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00161 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00306 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99993 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47044 * 90.00125 * 11 9 7 13 13 H 1.48500 * 109.47460 * 210.00619 * 11 9 7 14 14 H 1.48509 * 109.47074 * 330.00255 * 11 9 7 15 15 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 16 16 C 1.34779 * 119.99965 * 85.00573 * 15 2 1 17 17 O 1.21552 * 119.99807 * 359.97438 * 16 15 2 18 18 C 1.47870 * 119.99842 * 179.97438 * 16 15 2 19 19 N 1.34551 * 126.04788 * 0.02562 * 18 16 15 20 20 C 1.30875 * 107.27017 * 179.97438 * 19 18 16 21 21 N 1.34587 * 107.62098 * 0.02562 * 20 19 18 22 22 C 1.46503 * 125.74499 * 180.02562 * 21 20 19 23 23 N 1.28848 * 108.50521 * 359.72790 * 21 20 19 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 28 28 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 29 29 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 30 30 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 31 31 H 0.96997 * 119.99983 * 0.02562 * 6 5 4 32 32 H 0.96997 * 119.99879 * 179.97438 * 10 9 7 33 33 H 0.97003 * 119.99991 * 264.99646 * 15 2 1 34 34 H 1.07991 * 126.19210 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.47100 * 90.00100 * 22 21 20 36 36 H 1.09002 * 109.47142 * 209.99680 * 22 21 20 37 37 H 1.08993 * 109.47003 * 329.99673 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3952 -1.3405 2.7796 8 1 6.0937 -0.8598 2.1106 9 6 5.8580 -1.9957 3.9124 10 7 7.1478 -2.0300 4.1721 11 14 4.6499 -2.8278 5.0691 12 1 4.4450 -4.2352 4.6420 13 1 5.1916 -2.8038 6.4516 14 1 3.3527 -2.1057 5.0332 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8577 1.1610 -2.4117 18 6 2.6406 -0.7152 -3.5643 19 7 2.9938 -2.0113 -3.6415 20 6 3.3723 -2.2381 -4.8736 21 7 3.2533 -1.0838 -5.5554 22 6 3.5713 -0.8901 -6.9723 23 7 2.8066 -0.1794 -4.7537 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2057 29 1 3.9994 -1.0728 0.4260 30 1 3.8532 0.4369 1.3574 31 1 3.4259 -1.7365 3.1103 32 1 7.4711 -2.4875 4.9639 33 1 2.2491 -1.6318 -1.1525 34 1 3.7176 -3.1808 -5.2713 35 1 2.6846 -1.0895 -7.5743 36 1 3.8968 0.1375 -7.1345 37 1 4.3688 -1.5739 -7.2625 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668049695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:47 Heat of formation + Delta-G solvation = 39.071494 kcal Electronic energy + Delta-G solvation = -19768.878828 eV Core-core repulsion = 16582.621823 eV Total energy + Delta-G solvation = -3186.257005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.44173 -40.80583 -37.97587 -36.23743 -35.56344 -33.76370 -32.79521 -32.38654 -29.77806 -28.63641 -25.84780 -25.15440 -23.43649 -23.03435 -22.00388 -21.55728 -19.78102 -19.13173 -17.78976 -17.55184 -17.33253 -16.61494 -16.13814 -15.97513 -15.70743 -15.24322 -15.08891 -14.77487 -14.33443 -14.08218 -13.97264 -13.79604 -13.32968 -12.97094 -12.94527 -12.85975 -12.38704 -12.22784 -12.00193 -11.84001 -11.75205 -11.56243 -11.45288 -11.40145 -10.97657 -10.61718 -10.15086 -9.31189 -8.02910 -5.37890 0.28567 1.11319 1.30624 1.39886 1.45061 1.52436 2.06916 2.24913 2.50011 3.10621 3.28142 3.42239 3.50503 3.88782 4.00728 4.09753 4.25227 4.34847 4.40603 4.53560 4.59716 4.68565 4.76190 4.82632 4.85142 4.98857 5.16834 5.25047 5.31094 5.33047 5.47132 5.64949 5.73832 6.20640 6.33945 6.92300 7.07582 7.10051 7.81716 8.04467 9.18921 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.004008 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.203229 B = 6984.190531 C = 7822.101269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.122 4.122 5 C 0.154 3.846 6 N -0.756 5.756 7 C -0.242 4.242 8 H 0.047 0.953 9 C -0.066 4.066 10 N -0.986 5.986 11 Si 0.964 3.036 12 H -0.274 1.274 13 H -0.296 1.296 14 H -0.246 1.246 15 N -0.690 5.690 16 C 0.612 3.388 17 O -0.562 6.562 18 C 0.115 3.885 19 N -0.512 5.512 20 C 0.205 3.795 21 N -0.300 5.300 22 C 0.074 3.926 23 N -0.284 5.284 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.020 0.980 30 H 0.012 0.988 31 H 0.370 0.630 32 H 0.259 0.741 33 H 0.416 0.584 34 H 0.280 0.720 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.171 -2.898 -22.787 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.093 0.907 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.065 0.935 9 C -0.257 4.257 10 N -0.636 5.636 11 Si 0.790 3.210 12 H -0.200 1.200 13 H -0.223 1.223 14 H -0.170 1.170 15 N -0.342 5.342 16 C 0.395 3.605 17 O -0.438 6.438 18 C -0.164 4.164 19 N -0.238 5.238 20 C -0.089 4.089 21 N -0.096 5.096 22 C -0.064 4.064 23 N -0.126 5.126 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.204 0.796 32 H 0.068 0.932 33 H 0.253 0.747 34 H 0.295 0.705 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.321 -1.547 -22.742 26.920 hybrid contribution 0.396 -0.834 0.545 1.072 sum -13.925 -2.380 -22.197 26.311 Atomic orbital electron populations 1.22095 0.92823 1.03291 1.02841 1.21035 0.95441 0.96629 0.82478 0.90735 1.21980 0.93905 1.02486 0.97607 1.20752 0.93853 0.94418 0.88211 1.42643 1.03489 1.66642 1.27436 1.19017 0.83967 1.28275 1.06078 0.93487 1.25627 0.97783 1.01941 1.00386 1.69909 1.14436 1.49780 1.29507 0.85282 0.79259 0.78932 0.77525 1.19968 1.22253 1.17002 1.45807 1.65269 1.14882 1.08266 1.16543 0.77231 0.84968 0.81806 1.90771 1.51834 1.16158 1.85035 1.23559 1.08689 0.90356 0.93817 1.71237 1.18410 1.13686 1.20436 1.27501 0.99582 0.95014 0.86842 1.47835 1.42481 1.06496 1.12759 1.22772 1.05400 1.06989 0.71263 1.74237 1.16613 1.19838 1.01900 0.93376 0.90844 0.89494 0.88414 0.89356 0.96218 0.97007 0.79645 0.93221 0.74706 0.70459 0.87185 0.88615 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.48 71.98 0.68 -2.58 16 2 C 0.15 3.99 2.57 44.99 0.12 4.11 16 3 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16 4 C -0.12 -3.40 4.87 30.60 0.15 -3.25 16 5 C 0.15 6.12 6.15 86.38 0.53 6.65 16 6 N -0.76 -36.28 5.41 -343.45 -1.86 -38.14 16 7 C -0.24 -14.44 10.47 84.03 0.88 -13.56 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 10 N -0.99 -64.67 13.97 21.65 0.30 -64.36 16 11 Si 0.96 45.54 27.74 68.60 1.90 47.44 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 13 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 14 H -0.25 -10.26 6.52 99.48 0.65 -9.62 16 15 N -0.69 -19.81 4.53 -445.38 -2.02 -21.83 16 16 C 0.61 20.50 7.80 86.79 0.68 21.17 16 17 O -0.56 -22.13 16.75 -3.88 -0.06 -22.19 16 18 C 0.11 3.49 7.96 137.13 1.09 4.58 16 19 N -0.51 -12.87 11.09 -193.03 -2.14 -15.02 16 20 C 0.21 3.08 12.62 180.30 2.27 5.35 16 21 N -0.30 -4.93 3.72 -373.45 -1.39 -6.32 16 22 C 0.07 0.28 11.38 127.77 1.45 1.74 16 23 N -0.28 -7.90 12.08 -52.44 -0.63 -8.53 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.02 0.82 7.75 -2.39 -0.02 0.81 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.37 16.31 5.53 -92.71 -0.51 15.79 16 32 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 33 H 0.42 11.13 8.31 -92.71 -0.77 10.36 16 34 H 0.28 0.60 8.06 -2.92 -0.02 0.58 16 35 H 0.11 0.03 8.14 -2.38 -0.02 0.02 16 36 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.14 -0.57 8.14 -2.39 -0.02 -0.58 16 Total: -1.00 -87.98 321.68 2.17 -85.81 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.25 Total: 22.46 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 8.32 Total: 20.68 kcal Atomic # 7 Polarization: -146.46 SS G_CDS: -7.73 Total: -154.19 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Total: -87.98 2.17 -85.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668049695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.882 kcal (2) G-P(sol) polarization free energy of solvation -87.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds