Wall clock time and date at job start Mon Mar 30 2020 00:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 5 5 N 1.46507 * 109.46980 * 174.99955 * 4 2 1 6 6 C 1.36938 * 119.99671 * 179.97438 * 5 4 2 7 7 H 1.07990 * 120.00485 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99772 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99709 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00078 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47205 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47048 * 120.00267 * 10 8 6 13 13 H 1.48500 * 109.47282 * 240.00694 * 10 8 6 14 14 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 15 15 C 1.34784 * 119.99893 * 85.00288 * 14 2 1 16 16 O 1.21283 * 119.99649 * 0.02562 * 15 14 2 17 17 C 1.50697 * 119.99774 * 179.72962 * 15 14 2 18 18 C 1.53003 * 109.46624 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46956 * 179.97438 * 18 17 15 20 20 C 1.35355 * 126.90920 * 274.67950 * 19 18 17 21 21 N 1.33779 * 106.49438 * 179.90381 * 20 19 18 22 22 N 1.28630 * 108.88620 * 0.36812 * 21 20 19 23 23 N 1.28720 * 110.17972 * 359.77053 * 22 21 20 24 24 H 0.97001 * 125.87034 * 180.02562 * 23 22 21 25 25 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 26 26 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 27 27 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47116 * 294.99243 * 4 2 1 29 29 H 1.08992 * 109.47265 * 54.99911 * 4 2 1 30 30 H 0.96995 * 119.99766 * 359.97438 * 5 4 2 31 31 H 0.97000 * 119.99566 * 179.97438 * 9 8 6 32 32 H 0.97005 * 120.00261 * 265.00500 * 14 2 1 33 33 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 34 34 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 35 35 H 1.09001 * 109.46782 * 299.99104 * 18 17 15 36 36 H 1.08993 * 109.47555 * 59.99547 * 18 17 15 37 37 H 1.07998 * 126.75094 * 0.04311 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1837 -1.4381 2.2073 7 1 3.6467 -1.8432 3.0521 8 6 5.5672 -1.5382 2.1515 9 7 6.2216 -1.0448 1.1216 10 14 6.4999 -2.3731 3.5379 11 1 5.5395 -2.8396 4.5700 12 1 7.2507 -3.5357 2.9996 13 1 7.4508 -1.4082 4.1462 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3572 16 8 1.8591 1.1586 -2.4115 17 6 2.6552 -0.7272 -3.5860 18 6 2.7061 0.2558 -4.7574 19 6 3.2149 -0.4530 -5.9862 20 6 4.5080 -0.6455 -6.3367 21 7 4.4920 -1.3188 -7.4926 22 7 3.2701 -1.5225 -7.8389 23 7 2.4709 -1.0198 -6.9641 24 1 1.5018 -1.0435 -6.9994 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -0.1584 2.1370 29 1 1.6053 -1.7198 1.2952 30 1 3.9823 -0.4629 0.4317 31 1 7.1884 -1.1145 1.0828 32 1 2.2490 -1.6319 -1.1526 33 1 3.6556 -1.1151 -3.3941 34 1 1.9867 -1.5521 -3.8322 35 1 1.7059 0.6441 -4.9495 36 1 3.3749 1.0804 -4.5110 37 1 5.3809 -0.3214 -5.7896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669668925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:09 Heat of formation + Delta-G solvation = 53.866365 kcal Electronic energy + Delta-G solvation = -19734.816588 eV Core-core repulsion = 16549.201137 eV Total energy + Delta-G solvation = -3185.615451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.46343 -39.66959 -36.38940 -34.53055 -33.69091 -33.31725 -31.53710 -30.31357 -29.53468 -25.81204 -25.14617 -23.13658 -22.72936 -21.91750 -20.76964 -20.09416 -18.43484 -17.36746 -16.84938 -16.26856 -15.83037 -15.58787 -14.82156 -14.46930 -14.34548 -13.84463 -13.53355 -13.48244 -13.18622 -12.49659 -12.37218 -12.29368 -12.17049 -11.91931 -11.64022 -11.46196 -10.97523 -10.96062 -10.88237 -10.75011 -10.51561 -10.07538 -9.80502 -9.75060 -9.28578 -8.97913 -8.77452 -7.02168 -5.84085 -3.13943 1.35019 2.39440 2.53205 2.82212 3.38264 3.41312 3.44871 3.46940 4.27494 4.50127 4.52984 4.72116 4.82143 5.04594 5.09800 5.22333 5.26834 5.40711 5.45494 5.49481 5.58893 5.79106 5.80516 5.94995 6.00310 6.02686 6.12052 6.31969 6.41677 6.62113 6.63522 6.87275 7.63414 7.77506 8.26966 8.33980 8.44028 9.46132 10.01196 10.36684 11.38356 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.004168 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.106260 B = 6716.498920 C = 8038.578927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.244 4.244 7 H 0.071 0.929 8 C -0.011 4.011 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 N -0.709 5.709 15 C 0.516 3.484 16 O -0.551 6.551 17 C -0.139 4.139 18 C -0.031 4.031 19 C -0.004 4.004 20 C -0.044 4.044 21 N -0.266 5.266 22 N -0.088 5.088 23 N -0.391 5.391 24 H 0.446 0.554 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.024 0.976 30 H 0.386 0.614 31 H 0.255 0.745 32 H 0.405 0.595 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.378 0.659 -11.420 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.375 4.375 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.579 5.579 10 Si 0.738 3.262 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 N -0.360 5.360 15 C 0.302 3.698 16 O -0.430 6.430 17 C -0.180 4.180 18 C -0.071 4.071 19 C -0.138 4.138 20 C -0.201 4.201 21 N -0.133 5.133 22 N -0.068 5.068 23 N -0.112 5.112 24 H 0.292 0.708 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.220 0.780 31 H 0.065 0.935 32 H 0.240 0.760 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.278 0.629 -12.635 16.948 hybrid contribution 0.193 -0.299 1.620 1.658 sum -11.085 0.330 -11.015 15.631 Atomic orbital electron populations 1.22096 0.95556 1.01792 1.02120 1.21250 0.93283 0.98049 0.84657 0.89486 1.20984 0.86896 0.96942 0.93605 1.42356 0.99707 1.70350 1.25268 1.19260 0.89456 1.29577 0.99247 0.91095 1.24748 0.96426 1.01464 0.98079 1.69669 1.07257 1.50746 1.30207 0.86122 0.79908 0.78764 0.81388 1.20558 1.21824 1.21802 1.46010 1.66192 1.14493 1.09299 1.20400 0.77484 0.87229 0.84693 1.90684 1.51047 1.15905 1.85336 1.21663 1.04477 0.99080 0.92744 1.19879 1.03374 0.96887 0.86980 1.22385 0.92253 1.03860 0.95330 1.23538 0.97001 1.03497 0.96040 1.75107 1.11068 1.14505 1.12627 1.78278 0.95653 1.18202 1.14657 1.45132 1.11594 1.38562 1.15934 0.70840 0.91656 0.92512 0.92636 0.94895 0.95831 0.78011 0.93469 0.76048 0.87610 0.89218 0.89675 0.87590 0.78940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.48 37.15 0.35 -1.62 16 2 C 0.13 2.06 2.73 -67.93 -0.19 1.88 16 3 H 0.09 1.56 7.58 -51.93 -0.39 1.16 16 4 C 0.14 2.66 5.82 -4.04 -0.02 2.63 16 5 N -0.73 -17.45 5.43 -59.91 -0.33 -17.77 16 6 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 10 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 N -0.71 -10.11 4.52 -53.81 -0.24 -10.35 16 15 C 0.52 7.10 7.79 -10.98 -0.09 7.01 16 16 O -0.55 -9.24 15.64 5.56 0.09 -9.15 16 17 C -0.14 -1.37 5.68 -27.88 -0.16 -1.52 16 18 C -0.03 -0.28 5.07 -27.88 -0.14 -0.42 16 19 C 0.00 -0.04 6.56 -82.08 -0.54 -0.58 16 20 C -0.04 -0.49 11.99 -17.73 -0.21 -0.70 16 21 N -0.27 -3.61 12.41 30.24 0.38 -3.23 16 22 N -0.09 -1.08 13.38 60.35 0.81 -0.27 16 23 N -0.39 -3.43 6.98 33.54 0.23 -3.19 16 24 H 0.45 2.19 8.96 -190.40 -1.71 0.49 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.39 9.77 7.33 -40.82 -0.30 9.47 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.40 5.47 8.60 -40.82 -0.35 5.12 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -33.66 322.78 -6.26 -39.92 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.52 Total: 9.35 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.24 Total: -0.43 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 1.57 Total: -61.32 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.66 -6.26 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669668925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.787 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds