Wall clock time and date at job start Mon Mar 30 2020 00:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 5 5 N 1.46507 * 109.46980 * 174.99955 * 4 2 1 6 6 C 1.36938 * 119.99671 * 179.97438 * 5 4 2 7 7 H 1.07990 * 120.00485 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99772 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99709 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00078 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47205 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47048 * 120.00267 * 10 8 6 13 13 H 1.48500 * 109.47282 * 240.00694 * 10 8 6 14 14 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 15 15 C 1.34784 * 119.99893 * 85.00288 * 14 2 1 16 16 O 1.21283 * 119.99649 * 0.02562 * 15 14 2 17 17 C 1.50697 * 119.99774 * 179.72962 * 15 14 2 18 18 C 1.53003 * 109.46624 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46956 * 179.97438 * 18 17 15 20 20 C 1.35355 * 126.90920 * 274.67950 * 19 18 17 21 21 N 1.33779 * 106.49438 * 179.90381 * 20 19 18 22 22 N 1.28630 * 108.88620 * 0.36812 * 21 20 19 23 23 N 1.28720 * 110.17972 * 359.77053 * 22 21 20 24 24 H 0.97001 * 125.87034 * 180.02562 * 23 22 21 25 25 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 26 26 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 27 27 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47116 * 294.99243 * 4 2 1 29 29 H 1.08992 * 109.47265 * 54.99911 * 4 2 1 30 30 H 0.96995 * 119.99766 * 359.97438 * 5 4 2 31 31 H 0.97000 * 119.99566 * 179.97438 * 9 8 6 32 32 H 0.97005 * 120.00261 * 265.00500 * 14 2 1 33 33 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 34 34 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 35 35 H 1.09001 * 109.46782 * 299.99104 * 18 17 15 36 36 H 1.08993 * 109.47555 * 59.99547 * 18 17 15 37 37 H 1.07998 * 126.75094 * 0.04311 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1837 -1.4381 2.2073 7 1 3.6467 -1.8432 3.0521 8 6 5.5672 -1.5382 2.1515 9 7 6.2216 -1.0448 1.1216 10 14 6.4999 -2.3731 3.5379 11 1 5.5395 -2.8396 4.5700 12 1 7.2507 -3.5357 2.9996 13 1 7.4508 -1.4082 4.1462 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3572 16 8 1.8591 1.1586 -2.4115 17 6 2.6552 -0.7272 -3.5860 18 6 2.7061 0.2558 -4.7574 19 6 3.2149 -0.4530 -5.9862 20 6 4.5080 -0.6455 -6.3367 21 7 4.4920 -1.3188 -7.4926 22 7 3.2701 -1.5225 -7.8389 23 7 2.4709 -1.0198 -6.9641 24 1 1.5018 -1.0435 -6.9994 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -0.1584 2.1370 29 1 1.6053 -1.7198 1.2952 30 1 3.9823 -0.4629 0.4317 31 1 7.1884 -1.1145 1.0828 32 1 2.2490 -1.6319 -1.1526 33 1 3.6556 -1.1151 -3.3941 34 1 1.9867 -1.5521 -3.8322 35 1 1.7059 0.6441 -4.9495 36 1 3.3749 1.0804 -4.5110 37 1 5.3809 -0.3214 -5.7896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669668925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:08 Heat of formation + Delta-G solvation = 28.002055 kcal Electronic energy + Delta-G solvation = -19735.938149 eV Core-core repulsion = 16549.201137 eV Total energy + Delta-G solvation = -3186.737012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.29561 -40.81174 -37.76441 -35.54281 -35.29732 -34.15641 -33.05212 -31.74857 -30.53256 -27.40855 -26.11148 -24.47775 -23.98589 -22.84583 -21.95828 -21.22162 -19.25100 -19.19510 -18.03974 -17.29253 -16.94066 -16.69313 -16.43550 -15.53916 -15.40272 -15.21892 -15.08350 -14.63038 -14.34802 -13.85626 -13.60927 -13.44186 -13.28769 -13.01340 -12.81046 -12.76553 -12.58612 -12.30178 -12.09089 -11.87857 -11.79318 -11.66926 -11.58949 -11.00672 -10.82833 -10.14957 -9.96752 -8.99353 -7.93772 -5.22582 0.54619 1.49527 1.50528 1.51406 1.59796 1.73255 1.85552 2.35549 2.57374 3.40878 3.47256 3.69791 3.83467 3.91225 4.03766 4.07791 4.22678 4.32186 4.35791 4.46616 4.56826 4.65176 4.83854 4.89922 4.97191 5.02852 5.06669 5.16365 5.20211 5.34451 5.52702 5.65373 6.00148 6.27943 6.66092 7.34102 7.35676 7.41713 8.09306 8.33030 9.29373 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.004168 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.106260 B = 6716.498920 C = 8038.578927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 H 0.060 0.940 4 C 0.144 3.856 5 N -0.743 5.743 6 C -0.244 4.244 7 H 0.077 0.923 8 C -0.071 4.071 9 N -0.966 5.966 10 Si 0.969 3.031 11 H -0.266 1.266 12 H -0.294 1.294 13 H -0.297 1.297 14 N -0.710 5.710 15 C 0.513 3.487 16 O -0.583 6.583 17 C -0.130 4.130 18 C -0.022 4.022 19 C 0.011 3.989 20 C -0.058 4.058 21 N -0.302 5.302 22 N -0.109 5.109 23 N -0.371 5.371 24 H 0.463 0.537 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.375 0.625 31 H 0.250 0.750 32 H 0.409 0.591 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.909 -0.071 -11.031 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.034 3.966 3 H 0.078 0.922 4 C 0.017 3.983 5 N -0.386 5.386 6 C -0.376 4.376 7 H 0.095 0.905 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.799 3.201 11 H -0.190 1.190 12 H -0.221 1.221 13 H -0.225 1.225 14 N -0.361 5.361 15 C 0.301 3.699 16 O -0.464 6.464 17 C -0.170 4.170 18 C -0.062 4.062 19 C -0.123 4.123 20 C -0.216 4.216 21 N -0.169 5.169 22 N -0.089 5.089 23 N -0.095 5.095 24 H 0.312 0.688 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.208 0.792 31 H 0.059 0.941 32 H 0.245 0.755 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.877 -0.128 -12.245 17.770 hybrid contribution 0.572 -0.030 1.540 1.643 sum -12.305 -0.158 -10.705 16.310 Atomic orbital electron populations 1.21993 0.92757 1.03019 1.02628 1.21056 0.95262 0.96145 0.84110 0.92226 1.21137 0.84014 0.97963 0.95155 1.42528 1.01867 1.69967 1.24286 1.19653 0.89879 1.28369 0.99704 0.90471 1.25495 0.97486 1.02975 1.00370 1.69812 1.07015 1.52710 1.32123 0.85133 0.78539 0.77363 0.79055 1.19031 1.22091 1.22488 1.46022 1.66232 1.14671 1.09153 1.21012 0.76607 0.86896 0.85370 1.90671 1.52468 1.17388 1.85886 1.21637 1.04743 0.99581 0.91029 1.19794 1.03923 0.96252 0.86194 1.22320 0.91682 1.03120 0.95224 1.23900 0.98383 1.03515 0.95773 1.75078 1.11913 1.15929 1.13958 1.78210 0.95786 1.19231 1.15626 1.45124 1.12378 1.37097 1.14892 0.68759 0.90585 0.92591 0.90985 0.94782 0.94300 0.79226 0.94076 0.75513 0.87769 0.86384 0.88303 0.88421 0.77766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.48 71.98 0.68 -2.63 16 2 C 0.14 4.19 2.73 44.99 0.12 4.32 16 3 H 0.06 2.13 7.58 -2.39 -0.02 2.12 16 4 C 0.14 5.13 5.82 86.38 0.50 5.63 16 5 N -0.74 -35.07 5.43 -343.45 -1.87 -36.93 16 6 C -0.24 -12.92 9.99 84.03 0.84 -12.08 16 7 H 0.08 3.91 7.83 -2.92 -0.02 3.89 16 8 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 9 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 10 Si 0.97 44.62 29.55 68.60 2.03 46.64 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 13 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 14 N -0.71 -19.34 4.52 -442.53 -2.00 -21.33 16 15 C 0.51 13.47 7.79 87.65 0.68 14.15 16 16 O -0.58 -19.12 15.64 -3.04 -0.05 -19.17 16 17 C -0.13 -2.28 5.68 29.85 0.17 -2.11 16 18 C -0.02 -0.34 5.07 29.85 0.15 -0.19 16 19 C 0.01 0.20 6.56 41.36 0.27 0.47 16 20 C -0.06 -1.25 11.99 83.73 1.00 -0.24 16 21 N -0.30 -8.10 12.41 -58.25 -0.72 -8.82 16 22 N -0.11 -2.57 13.38 37.02 0.50 -2.07 16 23 N -0.37 -5.82 6.98 -47.78 -0.33 -6.16 16 24 H 0.46 3.44 8.96 -219.95 -1.97 1.46 16 25 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.38 19.11 7.33 -92.71 -0.68 18.44 16 31 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.41 10.42 8.60 -92.70 -0.80 9.63 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.34 8.10 -2.39 -0.02 1.33 16 36 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -71.89 322.78 0.39 -71.50 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -2.34 Total: 29.20 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 4.89 Total: 3.87 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -4.14 Total: -132.05 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.05 Total: -19.17 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.89 0.39 -71.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669668925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.500 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds