Wall clock time and date at job start Mon Mar 30 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47310 * 2 1 4 4 C 1.46502 * 120.00481 * 270.00037 * 3 2 1 5 5 C 1.50703 * 109.47120 * 269.99975 * 4 3 2 6 6 H 1.07999 * 120.00029 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99921 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00178 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47115 * 90.00372 * 9 7 5 11 11 H 1.48493 * 109.47325 * 210.00702 * 9 7 5 12 12 H 1.48506 * 109.47192 * 330.00710 * 9 7 5 13 13 C 1.34784 * 120.00084 * 89.99769 * 3 2 1 14 14 O 1.21601 * 120.00065 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99912 * 0.02562 * 13 3 2 16 16 C 1.40545 * 119.99840 * 180.02562 * 15 13 3 17 17 N 1.34017 * 126.79288 * 359.67986 * 16 15 13 18 18 N 1.28592 * 109.05080 * 179.88541 * 17 16 15 19 19 N 1.28704 * 110.37152 * 0.39424 * 18 17 16 20 20 C 1.46500 * 125.90816 * 179.72595 * 19 18 17 21 21 C 1.35874 * 126.79102 * 179.97438 * 16 15 13 22 22 C 1.50703 * 127.01100 * 359.93238 * 21 16 15 23 23 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46865 * 299.99843 * 1 2 3 25 25 H 1.08994 * 109.47070 * 60.00255 * 1 2 3 26 26 H 1.08995 * 109.47168 * 239.99466 * 2 1 3 27 27 H 1.09006 * 109.47224 * 120.00164 * 2 1 3 28 28 H 1.09004 * 109.46333 * 29.99671 * 4 3 2 29 29 H 1.08997 * 109.47493 * 149.99375 * 4 3 2 30 30 H 0.96998 * 120.00151 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99501 * 0.27141 * 15 13 3 32 32 H 1.09006 * 109.46796 * 270.04096 * 20 19 18 33 33 H 1.09000 * 109.47167 * 30.03673 * 20 19 18 34 34 H 1.09003 * 109.47072 * 150.04095 * 20 19 18 35 35 H 1.09006 * 109.47456 * 89.99774 * 22 21 16 36 36 H 1.09000 * 109.47316 * 209.99647 * 22 21 16 37 37 H 1.09002 * 109.47025 * 329.99844 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1492 2.3897 -2.8778 8 7 3.3492 3.1258 -3.6179 9 14 5.9136 2.0968 -3.4168 10 1 5.9776 0.8755 -4.2592 11 1 6.3922 3.2641 -4.2000 12 1 6.7737 1.9178 -2.2194 13 6 2.2430 2.0165 1.1673 14 8 2.6479 3.1631 1.1673 15 7 2.0188 1.3810 2.3345 16 6 2.2525 2.0438 3.5516 17 7 2.7008 3.2968 3.7101 18 7 2.7872 3.5558 4.9667 19 7 2.4262 2.5338 5.6607 20 6 2.3992 2.4546 7.1233 21 6 2.0739 1.5390 4.8004 22 6 1.5851 0.1595 5.1600 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.5817 1.6876 -2.0283 29 1 2.0955 3.1410 -1.1384 30 1 3.6753 3.5164 -4.4438 31 1 1.6995 0.4651 2.3344 32 1 3.3616 2.0929 7.4854 33 1 2.2038 3.4438 7.5372 34 1 1.6121 1.7681 7.4355 35 1 2.4359 -0.5164 5.2464 36 1 1.0541 0.1986 6.1110 37 1 0.9118 -0.2015 4.3825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672281690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:43 Heat of formation + Delta-G solvation = 55.088447 kcal Electronic energy + Delta-G solvation = -20593.725638 eV Core-core repulsion = 17408.163181 eV Total energy + Delta-G solvation = -3185.562458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.20280 -41.11989 -37.15102 -36.34223 -35.42889 -34.77961 -32.62952 -31.59833 -29.24888 -28.55738 -27.85850 -25.30438 -24.42131 -23.09103 -22.24064 -20.53556 -19.22104 -18.63337 -18.39986 -17.74897 -17.12541 -16.57896 -16.28672 -15.81791 -15.20928 -14.91408 -14.61082 -14.48429 -14.11057 -14.00801 -13.78371 -13.63420 -13.26753 -13.16113 -13.06197 -12.70606 -12.69399 -12.49571 -12.20227 -12.11559 -11.93399 -11.72662 -11.68988 -10.93907 -10.70198 -10.61524 -9.58447 -9.09662 -8.19563 -6.34226 0.55827 1.29955 1.35880 1.40328 1.42777 1.50571 1.82354 2.36626 2.48339 2.93942 3.09688 3.53004 3.81516 3.83298 4.07641 4.25769 4.37149 4.40243 4.56339 4.60716 4.68936 4.80650 4.88586 4.99068 5.00503 5.04963 5.12236 5.23001 5.40310 5.56992 5.60092 5.75176 5.80953 6.03533 6.09413 6.74405 7.02969 7.32510 7.56686 7.75383 8.87091 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.004953 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.675737 B = 5651.958700 C = 6284.524672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.612 5.612 4 C 0.280 3.720 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.688 3.312 14 O -0.603 6.603 15 N -0.635 5.635 16 C 0.204 3.796 17 N -0.312 5.312 18 N -0.116 5.116 19 N -0.279 5.279 20 C 0.070 3.930 21 C -0.035 4.035 22 C -0.072 4.072 23 H 0.103 0.897 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.032 0.968 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.428 0.572 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 -14.395 22.259 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.348 5.348 4 C 0.158 3.842 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.203 1.203 13 C 0.389 3.611 14 O -0.479 6.479 15 N -0.292 5.292 16 C -0.029 4.029 17 N -0.180 5.180 18 N -0.095 5.095 19 N -0.076 5.076 20 C -0.069 4.069 21 C -0.172 4.172 22 C -0.130 4.130 23 H 0.122 0.878 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.522 -12.013 22.075 25.965 hybrid contribution 0.490 -0.689 -0.826 1.182 sum -6.032 -12.702 21.249 25.480 Atomic orbital electron populations 1.22187 0.94336 1.03823 1.01664 1.21764 0.95468 0.81106 1.04042 1.47448 1.67779 1.15297 1.04235 1.18636 0.95326 0.91198 0.79016 1.21724 0.97996 1.32012 1.06339 0.93124 1.25834 1.02335 0.94450 0.96450 1.70051 1.37757 1.34187 1.14807 0.85420 0.79001 0.78345 0.78024 1.18272 1.20682 1.20342 1.16151 0.79297 0.84500 0.81145 1.90976 1.52105 1.18894 1.85966 1.41739 1.70411 1.16887 1.00173 1.18679 1.05675 0.91685 0.86862 1.75451 1.19384 1.15109 1.08061 1.78251 1.20904 1.12915 0.97455 1.47621 1.41234 1.07986 1.10756 1.22798 1.07232 1.07438 0.69419 1.22032 1.11371 0.97067 0.86717 1.20540 1.02558 0.84917 1.04993 0.87805 0.92694 0.94152 0.89992 0.88723 0.95049 0.98902 0.92415 0.72939 0.87188 0.87509 0.84536 0.88310 0.87318 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.15 16 2 C 0.10 2.97 5.89 86.38 0.51 3.48 16 3 N -0.61 -27.62 2.46 -844.18 -2.07 -29.69 16 4 C 0.28 15.88 5.16 85.63 0.44 16.33 16 5 C -0.54 -32.73 9.39 25.60 0.24 -32.49 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 9 Si 0.97 46.88 29.54 68.60 2.03 48.91 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 C 0.69 32.97 8.25 179.05 1.48 34.45 16 14 O -0.60 -36.82 14.69 -4.03 -0.06 -36.88 16 15 N -0.63 -22.16 5.33 -322.48 -1.72 -23.88 16 16 C 0.20 7.29 7.76 131.28 1.02 8.31 16 17 N -0.31 -14.06 10.72 -55.53 -0.60 -14.65 16 18 N -0.12 -4.21 13.15 37.02 0.49 -3.72 16 19 N -0.28 -6.47 3.77 -354.65 -1.34 -7.81 16 20 C 0.07 0.57 11.23 127.77 1.44 2.00 16 21 C -0.04 -0.80 7.05 41.34 0.29 -0.51 16 22 C -0.07 -0.60 10.04 71.24 0.72 0.11 16 23 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 27 H 0.09 2.09 6.36 -2.38 -0.02 2.07 16 28 H 0.03 1.77 8.07 -2.38 -0.02 1.75 16 29 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 30 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.43 10.22 6.02 -92.71 -0.56 9.67 16 32 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.14 0.01 7.16 -2.39 -0.02 0.00 16 35 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.11 0.20 7.20 -2.39 -0.02 0.18 16 37 H 0.09 0.62 7.76 -2.39 -0.02 0.60 16 Total: -1.00 -97.19 317.77 4.87 -92.32 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 0.53 Total: 3.75 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 7.33 Total: 29.48 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -4.95 Total: -137.58 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.06 Total: -36.88 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -97.19 4.87 -92.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672281690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.407 kcal (2) G-P(sol) polarization free energy of solvation -97.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds