Wall clock time and date at job start Mon Mar 30 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 5 5 C 1.36936 * 120.00314 * 274.99849 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 14 14 H 1.08998 * 109.47199 * 174.99987 * 13 2 1 15 15 C 1.53001 * 109.47044 * 294.99870 * 13 2 1 16 16 N 1.46496 * 109.47422 * 54.99584 * 13 2 1 17 17 C 1.34782 * 120.00086 * 154.99703 * 16 13 2 18 18 O 1.21586 * 119.99856 * 0.02562 * 17 16 13 19 19 C 1.47523 * 120.00103 * 180.02562 * 17 16 13 20 20 C 1.36598 * 125.77136 * 179.71488 * 19 17 16 21 21 N 1.34814 * 106.83708 * 179.90005 * 20 19 17 22 22 C 1.46507 * 126.59089 * 180.10885 * 21 20 19 23 23 N 1.40206 * 106.81337 * 0.36356 * 21 20 19 24 24 N 1.28756 * 108.36824 * 359.76550 * 23 21 20 25 25 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 26 26 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 27 27 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00040 * 94.99981 * 4 2 1 29 29 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 30 30 H 1.09004 * 109.47050 * 179.97438 * 15 13 2 31 31 H 1.08998 * 109.47150 * 300.00150 * 15 13 2 32 32 H 1.09000 * 109.47005 * 60.00557 * 15 13 2 33 33 H 0.97006 * 120.00329 * 335.00635 * 16 13 2 34 34 H 1.08003 * 126.57902 * 0.04754 * 20 19 17 35 35 H 1.08999 * 109.46861 * 270.27653 * 22 21 20 36 36 H 1.09003 * 109.46932 * 30.28111 * 22 21 20 37 37 H 1.09001 * 109.46753 * 150.27488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.7431 -0.0037 4.6414 9 14 3.0578 -2.4738 3.4249 10 1 1.8628 -3.2929 3.7507 11 1 3.5267 -2.8052 2.0554 12 1 4.1381 -2.7639 4.4016 13 6 2.0400 -0.7212 -1.2492 14 1 3.1263 -0.6443 -1.2951 15 6 1.6353 -2.1954 -1.1879 16 7 1.4559 -0.1037 -2.4423 17 6 2.0913 -0.1938 -3.6275 18 8 3.1492 -0.7880 -3.7065 19 6 1.5033 0.4285 -4.8289 20 6 2.0462 0.4145 -6.0823 21 7 1.1970 1.0890 -6.8832 22 6 1.3584 1.3333 -8.3187 23 7 0.1325 1.5166 -6.0770 24 7 0.3459 1.1102 -4.8741 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.2490 -1.6317 1.1527 29 1 3.0706 -0.4598 5.4323 30 1 1.9983 -2.7092 -2.0781 31 1 2.0699 -2.6549 -0.3002 32 1 0.5490 -2.2723 -1.1421 33 1 0.6118 0.3701 -2.3794 34 1 2.9760 -0.0500 -6.3759 35 1 1.9033 2.2652 -8.4696 36 1 1.9149 0.5102 -8.7670 37 1 0.3770 1.4062 -8.7874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674661152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:49 Heat of formation + Delta-G solvation = 79.404081 kcal Electronic energy + Delta-G solvation = -20080.112822 eV Core-core repulsion = 16895.604769 eV Total energy + Delta-G solvation = -3184.508053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41875 -39.53709 -37.01012 -34.98888 -33.94814 -31.90627 -31.17286 -29.68654 -28.54261 -28.09466 -24.68600 -23.94783 -22.60460 -22.32476 -20.48671 -19.28796 -18.46859 -17.67726 -16.53307 -16.35104 -15.75611 -15.00290 -14.89427 -14.64141 -14.23314 -14.00620 -13.80208 -13.55929 -13.50281 -12.69619 -12.55676 -12.39061 -12.10585 -11.72529 -11.52704 -11.49031 -11.07958 -10.86578 -10.69380 -10.57577 -10.28285 -10.06779 -9.98016 -9.55462 -9.53839 -8.93702 -8.84764 -7.28340 -5.75516 -3.11758 0.87328 1.56543 1.73651 3.20498 3.29596 3.39797 3.42436 3.47711 4.01078 4.03602 4.50430 4.53838 4.60721 4.74854 4.79518 5.07645 5.23990 5.34886 5.45568 5.55118 5.60008 5.68473 5.96787 6.00961 6.06895 6.21162 6.33260 6.36939 6.51670 6.68771 6.79134 7.03855 7.52400 7.78959 8.00376 8.27010 8.43200 9.21206 9.93376 10.12424 11.42687 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043946 B = 0.003751 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.988800 B = 7462.479514 C = 7744.222907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 H 0.062 0.938 4 N -0.744 5.744 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.276 1.276 12 H -0.290 1.290 13 C 0.133 3.867 14 H 0.092 0.908 15 C -0.162 4.162 16 N -0.701 5.701 17 C 0.602 3.398 18 O -0.542 6.542 19 C -0.097 4.097 20 C 0.091 3.909 21 N -0.366 5.366 22 C 0.088 3.912 23 N -0.067 5.067 24 N -0.203 5.203 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.363 0.637 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.407 0.593 34 H 0.206 0.794 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 0.279 -26.906 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 H 0.080 0.920 4 N -0.388 5.388 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.217 1.217 13 C 0.028 3.972 14 H 0.110 0.890 15 C -0.220 4.220 16 N -0.353 5.353 17 C 0.385 3.615 18 O -0.418 6.418 19 C -0.236 4.236 20 C -0.066 4.066 21 N -0.152 5.152 22 C -0.053 4.053 23 N -0.048 5.048 24 N -0.077 5.077 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.198 0.802 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.245 0.755 34 H 0.222 0.778 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.661 0.799 -26.757 27.018 hybrid contribution 0.860 -1.537 -0.140 1.767 sum -2.801 -0.739 -26.898 27.053 Atomic orbital electron populations 1.22506 0.98634 1.01350 1.00552 1.20331 0.92490 0.95905 0.84985 0.92020 1.42795 1.79806 1.09558 1.06672 1.19061 1.37135 0.95698 0.85373 0.89077 1.24652 1.01308 0.97496 0.95553 1.69700 1.52441 1.35540 1.00422 0.86602 0.78208 0.86876 0.77192 1.21022 1.20170 1.21681 1.21397 0.99255 0.92753 0.83780 0.89018 1.22178 1.01931 0.95898 1.02023 1.46015 1.25944 1.55751 1.07617 1.16759 0.83779 0.79244 0.81721 1.90804 1.22066 1.43656 1.85293 1.21600 0.96215 1.10061 0.95764 1.23387 0.97227 0.95652 0.90293 1.50383 1.16570 1.37497 1.10702 1.22193 1.05297 1.03941 0.73877 1.82006 1.07257 1.20501 0.95026 1.74644 1.13332 1.07330 1.12362 0.91829 0.94203 0.92909 0.80236 0.93039 0.92661 0.91296 0.92050 0.75531 0.77776 0.89190 0.88389 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.01 37.16 0.33 -2.56 16 2 C 0.17 3.30 2.93 -67.93 -0.20 3.10 16 3 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 4 N -0.74 -17.38 4.84 -53.43 -0.26 -17.64 16 5 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 9 Si 0.88 22.13 27.74 -169.99 -4.72 17.42 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.51 6.51 56.52 0.37 -6.15 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 C 0.13 2.24 2.62 -67.94 -0.18 2.06 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 15 C -0.16 -2.59 9.00 37.16 0.33 -2.26 16 16 N -0.70 -10.36 4.99 -54.86 -0.27 -10.64 16 17 C 0.60 8.97 7.78 -12.47 -0.10 8.88 16 18 O -0.54 -9.32 16.53 5.29 0.09 -9.23 16 19 C -0.10 -1.22 6.99 -83.55 -0.58 -1.81 16 20 C 0.09 0.83 11.31 -16.83 -0.19 0.64 16 21 N -0.37 -2.98 4.03 -67.85 -0.27 -3.25 16 22 C 0.09 0.23 11.51 59.85 0.69 0.92 16 23 N -0.07 -0.80 13.78 60.35 0.83 0.04 16 24 N -0.20 -2.70 12.04 32.85 0.40 -2.30 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.04 0.56 6.29 -51.93 -0.33 0.23 16 27 H 0.05 0.87 6.57 -51.93 -0.34 0.53 16 28 H 0.36 8.34 3.63 -40.82 -0.15 8.19 16 29 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.17 6.29 -51.93 -0.33 0.85 16 32 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 33 H 0.41 5.55 6.26 -40.82 -0.26 5.30 16 34 H 0.21 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.10 0.02 8.14 -51.93 -0.42 -0.41 16 37 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -35.07 312.10 -3.55 -38.62 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.68 Total: 8.78 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.14 Total: 2.09 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 1.20 Total: -62.37 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.72 Total: 17.42 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.07 -3.55 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.027 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds