Wall clock time and date at job start Mon Mar 30 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 5 5 C 1.36936 * 120.00314 * 274.99849 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 14 14 H 1.08998 * 109.47199 * 174.99987 * 13 2 1 15 15 C 1.53001 * 109.47044 * 294.99870 * 13 2 1 16 16 N 1.46496 * 109.47422 * 54.99584 * 13 2 1 17 17 C 1.34782 * 120.00086 * 154.99703 * 16 13 2 18 18 O 1.21586 * 119.99856 * 0.02562 * 17 16 13 19 19 C 1.47523 * 120.00103 * 180.02562 * 17 16 13 20 20 C 1.36598 * 125.77136 * 179.71488 * 19 17 16 21 21 N 1.34814 * 106.83708 * 179.90005 * 20 19 17 22 22 C 1.46507 * 126.59089 * 180.10885 * 21 20 19 23 23 N 1.40206 * 106.81337 * 0.36356 * 21 20 19 24 24 N 1.28756 * 108.36824 * 359.76550 * 23 21 20 25 25 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 26 26 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 27 27 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00040 * 94.99981 * 4 2 1 29 29 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 30 30 H 1.09004 * 109.47050 * 179.97438 * 15 13 2 31 31 H 1.08998 * 109.47150 * 300.00150 * 15 13 2 32 32 H 1.09000 * 109.47005 * 60.00557 * 15 13 2 33 33 H 0.97006 * 120.00329 * 335.00635 * 16 13 2 34 34 H 1.08003 * 126.57902 * 0.04754 * 20 19 17 35 35 H 1.08999 * 109.46861 * 270.27653 * 22 21 20 36 36 H 1.09003 * 109.46932 * 30.28111 * 22 21 20 37 37 H 1.09001 * 109.46753 * 150.27488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.7431 -0.0037 4.6414 9 14 3.0578 -2.4738 3.4249 10 1 1.8628 -3.2929 3.7507 11 1 3.5267 -2.8052 2.0554 12 1 4.1381 -2.7639 4.4016 13 6 2.0400 -0.7212 -1.2492 14 1 3.1263 -0.6443 -1.2951 15 6 1.6353 -2.1954 -1.1879 16 7 1.4559 -0.1037 -2.4423 17 6 2.0913 -0.1938 -3.6275 18 8 3.1492 -0.7880 -3.7065 19 6 1.5033 0.4285 -4.8289 20 6 2.0462 0.4145 -6.0823 21 7 1.1970 1.0890 -6.8832 22 6 1.3584 1.3333 -8.3187 23 7 0.1325 1.5166 -6.0770 24 7 0.3459 1.1102 -4.8741 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.2490 -1.6317 1.1527 29 1 3.0706 -0.4598 5.4323 30 1 1.9983 -2.7092 -2.0781 31 1 2.0699 -2.6549 -0.3002 32 1 0.5490 -2.2723 -1.1421 33 1 0.6118 0.3701 -2.3794 34 1 2.9760 -0.0500 -6.3759 35 1 1.9033 2.2652 -8.4696 36 1 1.9149 0.5102 -8.7670 37 1 0.3770 1.4062 -8.7874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674661152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:49 Heat of formation + Delta-G solvation = 51.617322 kcal Electronic energy + Delta-G solvation = -20081.317746 eV Core-core repulsion = 16895.604769 eV Total energy + Delta-G solvation = -3185.712977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.20952 -40.76645 -38.50396 -35.78335 -35.48134 -33.70508 -32.22498 -31.14750 -30.03829 -28.63580 -26.13605 -25.43625 -23.94165 -23.14410 -21.60283 -20.76416 -20.04559 -19.08566 -17.27675 -17.22773 -16.98594 -16.65062 -16.04781 -15.84478 -15.50154 -15.42438 -15.22382 -14.61364 -14.16261 -14.03360 -13.93515 -13.67201 -13.20006 -13.16316 -13.08170 -12.86747 -12.63056 -12.28219 -12.23203 -11.88228 -11.77591 -11.61551 -11.31949 -11.22909 -10.98879 -10.42858 -10.06704 -9.34324 -8.00666 -5.34745 0.16089 0.60172 1.18723 1.39575 1.42510 1.49378 2.07339 2.23255 2.49975 3.18131 3.30775 3.48772 3.65112 3.80645 3.92074 3.98239 4.04548 4.28853 4.39430 4.50186 4.57728 4.65681 4.70064 4.77429 4.84723 4.93421 5.00405 5.15779 5.23942 5.44836 5.46202 5.59304 5.79179 6.22772 6.42291 6.89548 7.08199 7.13484 7.83111 8.02843 9.20800 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043946 B = 0.003751 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.988800 B = 7462.479514 C = 7744.222907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 H 0.047 0.953 4 N -0.746 5.746 5 C -0.228 4.228 6 H 0.058 0.942 7 C -0.063 4.063 8 N -0.984 5.984 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.251 1.251 12 H -0.296 1.296 13 C 0.145 3.855 14 H 0.073 0.927 15 C -0.157 4.157 16 N -0.698 5.698 17 C 0.604 3.396 18 O -0.568 6.568 19 C -0.126 4.126 20 C 0.111 3.889 21 N -0.351 5.351 22 C 0.074 3.926 23 N -0.092 5.092 24 N -0.227 5.227 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.368 0.632 29 H 0.258 0.742 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.413 0.587 34 H 0.239 0.761 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -1.044 -30.161 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.061 3.939 3 H 0.065 0.935 4 N -0.391 5.391 5 C -0.358 4.358 6 H 0.076 0.924 7 C -0.254 4.254 8 N -0.635 5.635 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.176 1.176 12 H -0.223 1.223 13 C 0.040 3.960 14 H 0.091 0.909 15 C -0.215 4.215 16 N -0.350 5.350 17 C 0.390 3.610 18 O -0.446 6.446 19 C -0.266 4.266 20 C -0.047 4.047 21 N -0.136 5.136 22 C -0.064 4.064 23 N -0.073 5.073 24 N -0.100 5.100 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.203 0.797 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.255 0.745 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.774 -0.500 -30.109 30.349 hybrid contribution 0.873 -0.984 0.680 1.481 sum -2.901 -1.484 -29.429 29.608 Atomic orbital electron populations 1.22353 0.96507 1.02148 1.01048 1.20467 0.93843 0.95049 0.84570 0.93529 1.42760 1.80092 1.09750 1.06533 1.19006 1.35227 0.94554 0.87058 0.92354 1.25456 1.02282 1.02498 0.95172 1.69880 1.54543 1.37697 1.01342 0.85505 0.77855 0.80910 0.78146 1.20151 1.17584 1.22328 1.21030 0.98135 0.93360 0.83496 0.90899 1.22131 1.02759 0.94753 1.01863 1.45873 1.26120 1.55862 1.07150 1.17000 0.83278 0.78643 0.82119 1.90783 1.23158 1.44932 1.85773 1.21433 0.97163 1.11908 0.96126 1.23854 0.97619 0.94172 0.89077 1.50740 1.15012 1.35621 1.12190 1.22740 1.06709 1.06218 0.70763 1.81912 1.08914 1.21364 0.95084 1.74605 1.13955 1.08038 1.13401 0.94020 0.91057 0.91917 0.79685 0.93359 0.91977 0.92209 0.90691 0.74838 0.74497 0.87448 0.85137 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.01 71.98 0.65 -4.64 16 2 C 0.17 6.40 2.93 44.99 0.13 6.53 16 3 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 4 N -0.75 -34.65 4.84 -322.95 -1.56 -36.21 16 5 C -0.23 -12.99 10.41 84.03 0.87 -12.11 16 6 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 7 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 8 N -0.98 -63.64 13.97 21.65 0.30 -63.34 16 9 Si 0.95 45.73 27.74 68.60 1.90 47.63 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.25 -10.96 6.51 99.48 0.65 -10.32 16 12 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 13 C 0.15 4.76 2.62 44.99 0.12 4.88 16 14 H 0.07 2.69 7.58 -2.39 -0.02 2.67 16 15 C -0.16 -4.70 9.00 71.98 0.65 -4.06 16 16 N -0.70 -19.84 4.99 -445.73 -2.22 -22.06 16 17 C 0.60 17.30 7.78 86.69 0.67 17.97 16 18 O -0.57 -18.84 16.53 -3.99 -0.07 -18.90 16 19 C -0.13 -2.99 6.99 40.82 0.29 -2.70 16 20 C 0.11 1.70 11.31 83.85 0.95 2.65 16 21 N -0.35 -4.70 4.03 -368.56 -1.49 -6.18 16 22 C 0.07 0.11 11.51 127.77 1.47 1.58 16 23 N -0.09 -2.03 13.78 37.02 0.51 -1.52 16 24 N -0.23 -5.77 12.04 -49.99 -0.60 -6.37 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.89 6.29 -2.39 -0.02 1.87 16 27 H 0.06 1.94 6.57 -2.39 -0.02 1.93 16 28 H 0.37 16.37 3.63 -92.71 -0.34 16.04 16 29 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.90 6.29 -2.39 -0.02 1.89 16 32 H 0.07 2.03 6.57 -2.39 -0.02 2.01 16 33 H 0.41 10.73 6.26 -92.70 -0.58 10.15 16 34 H 0.24 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.13 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -77.99 312.10 3.18 -74.81 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.13 Total: 25.29 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 6.27 Total: 6.84 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -5.06 Total: -135.68 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.07 Total: -18.90 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Total: -77.99 3.18 -74.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.429 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds