Wall clock time and date at job start Mon Mar 30 2020 00:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47458 * 2 1 4 4 N 1.46507 * 109.46677 * 120.00106 * 2 1 3 5 5 C 1.34782 * 119.99543 * 274.99115 * 4 2 1 6 6 O 1.21595 * 119.99969 * 0.02562 * 5 4 2 7 7 C 1.47517 * 119.99792 * 180.02562 * 5 4 2 8 8 C 1.36596 * 125.77412 * 179.97438 * 7 5 4 9 9 N 1.34807 * 106.84342 * 180.02562 * 8 7 5 10 10 C 1.46507 * 126.59524 * 180.26460 * 9 8 7 11 11 N 1.40215 * 106.81120 * 359.97438 * 9 8 7 12 12 N 1.28755 * 108.36492 * 0.02562 * 11 9 8 13 13 C 1.52998 * 109.47098 * 239.99571 * 2 1 3 14 14 H 1.09006 * 109.47095 * 300.00369 * 13 2 1 15 15 C 1.52996 * 109.47231 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.47118 * 60.00125 * 13 2 1 17 17 C 1.36940 * 120.00207 * 204.99965 * 16 13 2 18 18 H 1.07997 * 120.00117 * 0.02562 * 17 16 13 19 19 C 1.38814 * 119.99788 * 180.02562 * 17 16 13 20 20 N 1.31614 * 119.99494 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00288 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47210 * 89.99837 * 21 19 17 23 23 H 1.48502 * 109.47145 * 210.00161 * 21 19 17 24 24 H 1.48508 * 109.46976 * 330.00091 * 21 19 17 25 25 H 1.09003 * 109.47170 * 300.00640 * 1 2 3 26 26 H 1.09005 * 109.46747 * 59.99645 * 1 2 3 27 27 H 1.08998 * 109.47634 * 180.02562 * 1 2 3 28 28 H 0.96993 * 120.00294 * 95.00293 * 4 2 1 29 29 H 1.08000 * 126.57450 * 359.97438 * 8 7 5 30 30 H 1.09004 * 109.46735 * 269.70385 * 10 9 8 31 31 H 1.08999 * 109.46769 * 29.70448 * 10 9 8 32 32 H 1.08999 * 109.47127 * 149.71282 * 10 9 8 33 33 H 1.08998 * 109.47179 * 180.02562 * 15 13 2 34 34 H 1.09006 * 109.46861 * 299.99873 * 15 13 2 35 35 H 1.08995 * 109.47681 * 59.99804 * 15 13 2 36 36 H 0.97002 * 119.99579 * 25.00373 * 16 13 2 37 37 H 0.97001 * 119.99846 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8576 1.1615 2.4118 7 6 2.6392 -0.7134 3.5616 8 6 2.8149 -0.1497 4.7933 9 7 3.2767 -1.1215 5.6054 10 6 3.6069 -0.9885 7.0266 11 7 3.3738 -2.2858 4.8302 12 7 2.9907 -2.0088 3.6325 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7490 -1.2491 15 6 3.5700 -0.7219 -1.2489 16 7 1.5517 -0.0308 -2.4454 17 6 1.4209 -0.7140 -3.6249 18 1 1.6773 -1.7620 -3.6733 19 6 0.9587 -0.0595 -4.7585 20 7 0.8325 -0.7162 -5.8920 21 14 0.5145 1.7530 -4.6747 22 1 1.7119 2.5714 -4.9935 23 1 -0.5605 2.0451 -5.6567 24 1 0.0389 2.0833 -3.3072 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2490 -1.6318 1.1527 29 1 2.6218 0.8778 5.0642 30 1 4.6553 -0.7092 7.1314 31 1 2.9790 -0.2185 7.4749 32 1 3.4321 -1.9390 7.5307 33 1 3.9333 -1.2354 -2.1390 34 1 3.9337 0.3057 -1.2488 35 1 3.9330 -1.2359 -0.3589 36 1 1.3211 0.9104 -2.4018 37 1 0.5092 -0.2590 -6.6841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674661155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:52 Heat of formation + Delta-G solvation = 74.819855 kcal Electronic energy + Delta-G solvation = -20063.323726 eV Core-core repulsion = 16878.616887 eV Total energy + Delta-G solvation = -3184.706840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41958 -39.49651 -36.83653 -34.99098 -33.97007 -31.86872 -31.19160 -29.70008 -28.84099 -28.08599 -24.24410 -23.77842 -22.54698 -22.12647 -20.35039 -20.12876 -18.36641 -17.62435 -16.53441 -16.33625 -15.88635 -14.92519 -14.84804 -14.52772 -14.14521 -13.89161 -13.71230 -13.51204 -13.31890 -12.87454 -12.47562 -12.38656 -12.09735 -11.80904 -11.52408 -11.32388 -11.06029 -10.87574 -10.73447 -10.69484 -10.27992 -10.04517 -9.89691 -9.56583 -9.54301 -9.02470 -8.78571 -7.27130 -5.75205 -3.11337 0.87097 1.56554 1.73431 3.19798 3.29479 3.40641 3.44312 3.48729 4.00824 4.03226 4.50001 4.53268 4.61396 4.74404 4.79178 5.07425 5.19576 5.43761 5.46761 5.55638 5.67541 5.76354 6.00675 6.06899 6.14231 6.30632 6.34947 6.46297 6.57295 6.72009 6.85172 6.99307 7.52624 7.78903 7.99899 8.26604 8.43314 9.21078 9.93492 10.12702 11.42953 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045339 B = 0.003757 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.417545 B = 7450.588163 C = 7761.989445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.133 3.867 3 H 0.086 0.914 4 N -0.699 5.699 5 C 0.603 3.397 6 O -0.543 6.543 7 C -0.097 4.097 8 C 0.091 3.909 9 N -0.367 5.367 10 C 0.088 3.912 11 N -0.067 5.067 12 N -0.202 5.202 13 C 0.173 3.827 14 H 0.061 0.939 15 C -0.166 4.166 16 N -0.742 5.742 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.275 1.275 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.407 0.593 29 H 0.205 0.795 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.362 0.638 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 0.985 26.841 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 H 0.104 0.896 4 N -0.349 5.349 5 C 0.386 3.614 6 O -0.420 6.420 7 C -0.236 4.236 8 C -0.066 4.066 9 N -0.152 5.152 10 C -0.053 4.053 11 N -0.048 5.048 12 N -0.076 5.076 13 C 0.063 3.937 14 H 0.079 0.921 15 C -0.226 4.226 16 N -0.386 5.386 17 C -0.371 4.371 18 H 0.109 0.891 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.712 3.288 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.201 1.201 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.243 0.757 29 H 0.222 0.778 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.195 0.805 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.914 0.169 26.704 27.153 hybrid contribution -0.374 1.901 0.131 1.942 sum 4.540 2.070 26.834 27.294 Atomic orbital electron populations 1.22080 0.94791 1.02310 1.02125 1.21414 0.94569 0.97561 0.83646 0.89586 1.45840 1.65513 1.14508 1.09028 1.16723 0.77484 0.85601 0.81573 1.90803 1.51557 1.14901 1.84702 1.21594 1.14305 0.91441 0.96272 1.23380 0.96389 0.96675 0.90164 1.50384 1.44736 1.08577 1.11465 1.22191 1.03110 1.05454 0.74551 1.82013 1.22115 1.04395 0.96263 1.74646 1.08110 1.13120 1.11718 1.20361 0.92382 0.95966 0.84962 0.92093 1.22416 0.98427 1.01123 1.00586 1.42648 1.79803 1.09443 1.06681 1.19030 1.37085 0.95622 0.85314 0.89099 1.24647 1.01360 0.97469 0.95537 1.69697 1.52614 1.35559 1.00265 0.86587 0.78162 0.86860 0.77159 1.21101 1.21786 1.20128 0.93160 0.90594 0.92465 0.75728 0.77813 0.89201 0.88397 0.88085 0.92097 0.93539 0.94028 0.80481 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.33 37.16 0.35 -2.23 16 2 C 0.13 2.22 2.21 -67.93 -0.15 2.07 16 3 H 0.09 1.54 7.58 -51.94 -0.39 1.15 16 4 N -0.70 -10.18 4.38 -54.85 -0.24 -10.42 16 5 C 0.60 8.86 7.78 -12.48 -0.10 8.77 16 6 O -0.54 -9.23 16.53 5.28 0.09 -9.14 16 7 C -0.10 -1.21 6.99 -83.55 -0.58 -1.79 16 8 C 0.09 0.82 11.31 -16.84 -0.19 0.63 16 9 N -0.37 -2.96 4.03 -67.85 -0.27 -3.24 16 10 C 0.09 0.23 11.51 59.85 0.69 0.92 16 11 N -0.07 -0.79 13.78 60.35 0.83 0.04 16 12 N -0.20 -2.67 12.04 32.85 0.40 -2.27 16 13 C 0.17 3.27 2.52 -67.93 -0.17 3.10 16 14 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 15 C -0.17 -2.93 9.33 37.16 0.35 -2.58 16 16 N -0.74 -17.17 4.23 -53.43 -0.23 -17.40 16 17 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 21 Si 0.88 22.09 27.73 -169.99 -4.71 17.37 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.38 7.45 -51.93 -0.39 1.00 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.41 5.45 8.07 -40.82 -0.33 5.12 16 29 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 36 H 0.36 8.34 5.45 -40.82 -0.22 8.12 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -34.76 319.81 -3.72 -38.48 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.11 Total: 8.07 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.06 Total: 2.12 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 1.26 Total: -61.72 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.76 -3.72 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.295 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds