Wall clock time and date at job start Mon Mar 30 2020 00:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47458 * 2 1 4 4 N 1.46507 * 109.46677 * 120.00106 * 2 1 3 5 5 C 1.34782 * 119.99543 * 274.99115 * 4 2 1 6 6 O 1.21595 * 119.99969 * 0.02562 * 5 4 2 7 7 C 1.47517 * 119.99792 * 180.02562 * 5 4 2 8 8 C 1.36596 * 125.77412 * 179.97438 * 7 5 4 9 9 N 1.34807 * 106.84342 * 180.02562 * 8 7 5 10 10 C 1.46507 * 126.59524 * 180.26460 * 9 8 7 11 11 N 1.40215 * 106.81120 * 359.97438 * 9 8 7 12 12 N 1.28755 * 108.36492 * 0.02562 * 11 9 8 13 13 C 1.52998 * 109.47098 * 239.99571 * 2 1 3 14 14 H 1.09006 * 109.47095 * 300.00369 * 13 2 1 15 15 C 1.52996 * 109.47231 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.47118 * 60.00125 * 13 2 1 17 17 C 1.36940 * 120.00207 * 204.99965 * 16 13 2 18 18 H 1.07997 * 120.00117 * 0.02562 * 17 16 13 19 19 C 1.38814 * 119.99788 * 180.02562 * 17 16 13 20 20 N 1.31614 * 119.99494 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00288 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47210 * 89.99837 * 21 19 17 23 23 H 1.48502 * 109.47145 * 210.00161 * 21 19 17 24 24 H 1.48508 * 109.46976 * 330.00091 * 21 19 17 25 25 H 1.09003 * 109.47170 * 300.00640 * 1 2 3 26 26 H 1.09005 * 109.46747 * 59.99645 * 1 2 3 27 27 H 1.08998 * 109.47634 * 180.02562 * 1 2 3 28 28 H 0.96993 * 120.00294 * 95.00293 * 4 2 1 29 29 H 1.08000 * 126.57450 * 359.97438 * 8 7 5 30 30 H 1.09004 * 109.46735 * 269.70385 * 10 9 8 31 31 H 1.08999 * 109.46769 * 29.70448 * 10 9 8 32 32 H 1.08999 * 109.47127 * 149.71282 * 10 9 8 33 33 H 1.08998 * 109.47179 * 180.02562 * 15 13 2 34 34 H 1.09006 * 109.46861 * 299.99873 * 15 13 2 35 35 H 1.08995 * 109.47681 * 59.99804 * 15 13 2 36 36 H 0.97002 * 119.99579 * 25.00373 * 16 13 2 37 37 H 0.97001 * 119.99846 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8576 1.1615 2.4118 7 6 2.6392 -0.7134 3.5616 8 6 2.8149 -0.1497 4.7933 9 7 3.2767 -1.1215 5.6054 10 6 3.6069 -0.9885 7.0266 11 7 3.3738 -2.2858 4.8302 12 7 2.9907 -2.0088 3.6325 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7490 -1.2491 15 6 3.5700 -0.7219 -1.2489 16 7 1.5517 -0.0308 -2.4454 17 6 1.4209 -0.7140 -3.6249 18 1 1.6773 -1.7620 -3.6733 19 6 0.9587 -0.0595 -4.7585 20 7 0.8325 -0.7162 -5.8920 21 14 0.5145 1.7530 -4.6747 22 1 1.7119 2.5714 -4.9935 23 1 -0.5605 2.0451 -5.6567 24 1 0.0389 2.0833 -3.3072 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2490 -1.6318 1.1527 29 1 2.6218 0.8778 5.0642 30 1 4.6553 -0.7092 7.1314 31 1 2.9790 -0.2185 7.4749 32 1 3.4321 -1.9390 7.5307 33 1 3.9333 -1.2354 -2.1390 34 1 3.9337 0.3057 -1.2488 35 1 3.9330 -1.2359 -0.3589 36 1 1.3211 0.9104 -2.4018 37 1 0.5092 -0.2590 -6.6841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674661155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:51 Heat of formation + Delta-G solvation = 47.782019 kcal Electronic energy + Delta-G solvation = -20064.496175 eV Core-core repulsion = 16878.616887 eV Total energy + Delta-G solvation = -3185.879288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.19918 -40.70359 -38.34463 -35.77440 -35.47064 -33.68401 -32.22957 -31.04807 -30.47877 -28.61993 -25.70379 -25.29524 -23.62908 -23.11750 -21.66130 -21.43117 -19.91222 -19.02283 -17.39198 -17.23583 -17.02513 -16.41391 -15.99892 -15.77165 -15.50129 -15.22821 -14.90753 -14.62666 -14.22480 -14.11663 -13.94906 -13.75673 -13.25881 -13.11832 -13.04877 -12.75007 -12.61912 -12.33912 -12.26395 -12.04319 -11.78631 -11.46772 -11.31340 -11.22583 -11.01442 -10.41816 -10.06690 -9.31198 -7.98876 -5.32528 0.17031 0.61517 1.19511 1.41707 1.43519 1.50611 2.07570 2.24830 2.51502 3.19019 3.33239 3.48680 3.69112 3.75654 3.92881 3.99213 4.16914 4.31378 4.39589 4.51118 4.58736 4.70154 4.73869 4.79800 4.87181 4.93505 5.02120 5.16013 5.31172 5.46586 5.46918 5.49642 5.80885 6.24314 6.43868 6.90610 7.09401 7.14692 7.84441 8.03746 9.22491 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045339 B = 0.003757 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.417545 B = 7450.588163 C = 7761.989445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.147 3.853 3 H 0.079 0.921 4 N -0.696 5.696 5 C 0.607 3.393 6 O -0.568 6.568 7 C -0.125 4.125 8 C 0.111 3.889 9 N -0.351 5.351 10 C 0.074 3.926 11 N -0.093 5.093 12 N -0.226 5.226 13 C 0.171 3.829 14 H 0.057 0.943 15 C -0.156 4.156 16 N -0.744 5.744 17 C -0.221 4.221 18 H 0.061 0.939 19 C -0.062 4.062 20 N -0.984 5.984 21 Si 0.948 3.052 22 H -0.282 1.282 23 H -0.298 1.298 24 H -0.249 1.249 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.413 0.587 29 H 0.239 0.761 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.365 0.635 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 2.447 30.111 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 H 0.097 0.903 4 N -0.346 5.346 5 C 0.392 3.608 6 O -0.446 6.446 7 C -0.266 4.266 8 C -0.048 4.048 9 N -0.136 5.136 10 C -0.064 4.064 11 N -0.074 5.074 12 N -0.100 5.100 13 C 0.062 3.938 14 H 0.075 0.925 15 C -0.216 4.216 16 N -0.387 5.387 17 C -0.352 4.352 18 H 0.079 0.921 19 C -0.253 4.253 20 N -0.635 5.635 21 Si 0.776 3.224 22 H -0.208 1.208 23 H -0.225 1.225 24 H -0.174 1.174 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.250 0.750 29 H 0.255 0.745 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.199 0.801 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.298 1.598 30.073 30.578 hybrid contribution -0.408 1.363 -0.694 1.583 sum 4.890 2.961 29.378 29.929 Atomic orbital electron populations 1.22015 0.94653 1.02406 1.01700 1.21048 0.94526 0.96863 0.83417 0.90282 1.45703 1.65663 1.14698 1.08560 1.16940 0.76678 0.85283 0.81903 1.90783 1.52739 1.15926 1.85171 1.21440 1.16658 0.91789 0.96671 1.23854 0.94197 0.97788 0.88925 1.50742 1.42739 1.07219 1.12896 1.22733 1.04988 1.07157 0.71546 1.81922 1.22975 1.06174 0.96319 1.74612 1.08932 1.13704 1.12734 1.20502 0.93091 0.95664 0.84508 0.92479 1.22275 0.97166 1.01253 1.00903 1.42604 1.79964 1.09555 1.06616 1.18966 1.34897 0.94507 0.86856 0.92140 1.25413 1.02465 1.02226 0.95217 1.69871 1.54834 1.37620 1.01163 0.85510 0.77618 0.81118 0.78171 1.20791 1.22453 1.17395 0.92355 0.92133 0.92145 0.75034 0.74494 0.87399 0.85162 0.87315 0.94126 0.93460 0.91343 0.80115 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.79 9.33 71.98 0.67 -4.12 16 2 C 0.15 4.72 2.21 44.99 0.10 4.82 16 3 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 4 N -0.70 -19.36 4.38 -445.71 -1.95 -21.32 16 5 C 0.61 16.88 7.78 86.69 0.67 17.55 16 6 O -0.57 -18.25 16.53 -4.02 -0.07 -18.32 16 7 C -0.13 -2.91 6.99 40.81 0.29 -2.62 16 8 C 0.11 1.66 11.31 83.85 0.95 2.61 16 9 N -0.35 -4.64 4.03 -368.58 -1.49 -6.12 16 10 C 0.07 0.10 11.51 127.77 1.47 1.57 16 11 N -0.09 -2.05 13.78 37.02 0.51 -1.54 16 12 N -0.23 -5.72 12.04 -50.00 -0.60 -6.32 16 13 C 0.17 6.34 2.52 44.99 0.11 6.45 16 14 H 0.06 2.18 8.08 -2.38 -0.02 2.16 16 15 C -0.16 -5.39 9.33 71.98 0.67 -4.72 16 16 N -0.74 -34.02 4.23 -322.95 -1.37 -35.39 16 17 C -0.22 -12.41 10.41 84.03 0.87 -11.53 16 18 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 19 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 20 N -0.98 -63.19 13.97 21.65 0.30 -62.89 16 21 Si 0.95 45.69 27.73 68.60 1.90 47.59 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 24 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 2.12 7.45 -2.38 -0.02 2.11 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.41 10.63 8.07 -92.71 -0.75 9.88 16 29 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 30 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.13 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.07 1.98 7.44 -2.39 -0.02 1.96 16 36 H 0.37 16.29 5.45 -92.71 -0.50 15.79 16 37 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -76.52 319.81 3.30 -73.22 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.22 Total: 24.25 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.28 Total: 6.83 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -4.59 Total: -133.58 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.07 Total: -18.32 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -76.52 3.30 -73.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.000 kcal (2) G-P(sol) polarization free energy of solvation -76.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds