Wall clock time and date at job start Mon Mar 30 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47050 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47205 * 119.99454 * 9 7 5 12 12 H 1.48500 * 109.46799 * 240.00306 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09002 * 109.47103 * 300.00247 * 13 2 1 15 15 C 1.52997 * 109.47482 * 179.97438 * 13 2 1 16 16 N 1.46510 * 109.46966 * 59.99937 * 13 2 1 17 17 C 1.34774 * 119.99612 * 205.00152 * 16 13 2 18 18 O 1.21592 * 120.00387 * 359.97438 * 17 16 13 19 19 C 1.47526 * 119.99265 * 180.02562 * 17 16 13 20 20 C 1.36604 * 125.76473 * 179.71542 * 19 17 16 21 21 N 1.34814 * 106.83479 * 179.89787 * 20 19 17 22 22 C 1.46504 * 126.59449 * 180.13242 * 21 20 19 23 23 N 1.40209 * 106.81418 * 0.35937 * 21 20 19 24 24 N 1.28760 * 108.36340 * 359.76936 * 23 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 29 29 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47261 * 180.02562 * 15 13 2 31 31 H 1.09002 * 109.47153 * 300.00216 * 15 13 2 32 32 H 1.09001 * 109.47289 * 60.00300 * 15 13 2 33 33 H 0.96995 * 119.99596 * 25.00171 * 16 13 2 34 34 H 1.07995 * 126.58086 * 0.04220 * 20 19 17 35 35 H 1.08997 * 109.46911 * 270.24436 * 22 21 20 36 36 H 1.09003 * 109.46865 * 30.24536 * 22 21 20 37 37 H 1.09003 * 109.47381 * 150.24064 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 2.3752 1.6824 4.9211 11 1 1.9278 -0.3587 6.1522 12 1 4.2058 0.2269 5.5615 13 6 2.0400 -0.7212 -1.2491 14 1 1.6767 -1.7489 -1.2491 15 6 3.5700 -0.7207 -1.2494 16 7 1.5517 -0.0306 -2.4454 17 6 1.4230 -0.7031 -3.6063 18 8 1.7127 -1.8827 -3.6610 19 6 0.9318 -0.0075 -4.8110 20 6 0.7620 -0.5699 -6.0442 21 7 0.2974 0.4013 -6.8556 22 6 -0.0363 0.2674 -8.2759 23 7 0.1998 1.5654 -6.0803 24 7 0.5813 1.2880 -4.8822 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 2.2490 -1.6317 1.1527 29 1 3.2468 -2.3964 4.2425 30 1 3.9334 -1.2342 -2.1397 31 1 3.9330 0.3071 -1.2497 32 1 3.9338 -1.2343 -0.3595 33 1 1.3210 0.9105 -2.4018 34 1 0.9596 -1.5962 -6.3163 35 1 0.8463 0.4822 -8.8782 36 1 -0.3738 -0.7496 -8.4755 37 1 -0.8298 0.9700 -8.5305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674661157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:54 Heat of formation + Delta-G solvation = 70.710097 kcal Electronic energy + Delta-G solvation = -19994.427969 eV Core-core repulsion = 16809.542917 eV Total energy + Delta-G solvation = -3184.885052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.37131 -39.39224 -36.66165 -34.94528 -33.85109 -31.80764 -31.09463 -29.47567 -28.36395 -27.99777 -24.15718 -23.91958 -22.52330 -22.19847 -20.30820 -19.98075 -18.16275 -17.32202 -16.48867 -16.28304 -15.68751 -14.88594 -14.78497 -14.49826 -14.13048 -13.68388 -13.56251 -13.48274 -13.20768 -12.97369 -12.37909 -12.33807 -11.80160 -11.63842 -11.47654 -11.12441 -10.91716 -10.80505 -10.65345 -10.63328 -10.14640 -10.01146 -9.81739 -9.63646 -9.48960 -8.97463 -8.69808 -6.94903 -5.74318 -3.03435 0.91681 1.62304 1.77737 3.28768 3.37325 3.45641 3.51697 3.53465 4.05402 4.08296 4.53142 4.58075 4.63833 4.80146 4.83021 5.11923 5.34819 5.53821 5.61914 5.74397 5.81319 5.96127 6.05195 6.18007 6.28178 6.45106 6.48881 6.60639 6.68915 6.87416 6.99210 7.09318 7.60115 7.73264 7.85725 8.35640 8.43724 9.55052 10.10563 10.45922 11.48241 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.049249 B = 0.003495 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.407308 B = 8009.123965 C = 8276.778185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.718 5.718 5 C -0.236 4.236 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.136 3.864 14 H 0.087 0.913 15 C -0.153 4.153 16 N -0.699 5.699 17 C 0.601 3.399 18 O -0.542 6.542 19 C -0.095 4.095 20 C 0.090 3.910 21 N -0.367 5.367 22 C 0.088 3.912 23 N -0.069 5.069 24 N -0.203 5.203 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.385 0.615 29 H 0.255 0.745 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.405 0.595 34 H 0.205 0.795 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 3.377 -23.780 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.070 0.930 4 N -0.360 5.360 5 C -0.367 4.367 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.031 3.969 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.349 5.349 17 C 0.384 3.616 18 O -0.418 6.418 19 C -0.235 4.235 20 C -0.066 4.066 21 N -0.152 5.152 22 C -0.053 4.053 23 N -0.049 5.049 24 N -0.077 5.077 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.241 0.759 34 H 0.222 0.778 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.321 4.134 -23.687 24.627 hybrid contribution 0.222 -0.449 0.685 0.849 sum -5.099 3.685 -23.002 23.847 Atomic orbital electron populations 1.22447 0.98975 1.01082 1.00006 1.20392 0.92174 0.95662 0.85992 0.93004 1.42300 1.78205 1.10684 1.04826 1.19252 1.36478 0.93896 0.87056 0.91072 1.24734 1.02179 0.95975 0.98026 1.69672 1.50899 1.08607 1.28789 0.86129 0.77259 0.78795 0.84074 1.20571 1.21948 1.21924 1.21409 0.94559 0.97593 0.83328 0.89472 1.22059 0.94760 1.01914 1.02359 1.45888 1.65447 1.14409 1.09161 1.16728 0.77599 0.85639 0.81586 1.90807 1.51492 1.14869 1.84670 1.21637 1.14170 0.91419 0.96271 1.23391 0.96384 0.96742 0.90134 1.50375 1.44698 1.08659 1.11476 1.22183 1.03476 1.05051 0.74577 1.82000 1.22252 1.04427 0.96255 1.74636 1.08228 1.13150 1.11658 0.93438 0.94378 0.92631 0.78055 0.93555 0.93401 0.92976 0.89993 0.75943 0.77794 0.89254 0.88395 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.33 37.16 0.35 -2.71 16 2 C 0.17 3.32 2.52 -67.94 -0.17 3.15 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.72 -17.66 4.43 -53.43 -0.24 -17.90 16 5 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 9 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 C 0.14 2.40 2.21 -67.93 -0.15 2.25 16 14 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 15 C -0.15 -2.71 9.33 37.16 0.35 -2.36 16 16 N -0.70 -10.72 4.38 -54.85 -0.24 -10.96 16 17 C 0.60 9.28 7.78 -12.48 -0.10 9.18 16 18 O -0.54 -9.66 16.53 5.28 0.09 -9.58 16 19 C -0.10 -1.24 6.99 -83.55 -0.58 -1.83 16 20 C 0.09 0.86 11.31 -16.83 -0.19 0.67 16 21 N -0.37 -3.10 4.03 -67.85 -0.27 -3.38 16 22 C 0.09 0.26 11.51 59.85 0.69 0.95 16 23 N -0.07 -0.83 13.78 60.35 0.83 0.00 16 24 N -0.20 -2.77 12.04 32.85 0.40 -2.37 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.60 7.45 -51.93 -0.39 0.22 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.39 10.14 7.59 -40.82 -0.31 9.83 16 29 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.63 7.45 -51.93 -0.39 1.24 16 33 H 0.41 5.71 8.07 -40.82 -0.33 5.38 16 34 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -33.81 322.93 -4.08 -37.89 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.15 Total: 9.09 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.06 Total: 2.25 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 1.20 Total: -61.86 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.81 -4.08 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.602 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds