Wall clock time and date at job start Mon Mar 30 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47050 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47205 * 119.99454 * 9 7 5 12 12 H 1.48500 * 109.46799 * 240.00306 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09002 * 109.47103 * 300.00247 * 13 2 1 15 15 C 1.52997 * 109.47482 * 179.97438 * 13 2 1 16 16 N 1.46510 * 109.46966 * 59.99937 * 13 2 1 17 17 C 1.34774 * 119.99612 * 205.00152 * 16 13 2 18 18 O 1.21592 * 120.00387 * 359.97438 * 17 16 13 19 19 C 1.47526 * 119.99265 * 180.02562 * 17 16 13 20 20 C 1.36604 * 125.76473 * 179.71542 * 19 17 16 21 21 N 1.34814 * 106.83479 * 179.89787 * 20 19 17 22 22 C 1.46504 * 126.59449 * 180.13242 * 21 20 19 23 23 N 1.40209 * 106.81418 * 0.35937 * 21 20 19 24 24 N 1.28760 * 108.36340 * 359.76936 * 23 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 29 29 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47261 * 180.02562 * 15 13 2 31 31 H 1.09002 * 109.47153 * 300.00216 * 15 13 2 32 32 H 1.09001 * 109.47289 * 60.00300 * 15 13 2 33 33 H 0.96995 * 119.99596 * 25.00171 * 16 13 2 34 34 H 1.07995 * 126.58086 * 0.04220 * 20 19 17 35 35 H 1.08997 * 109.46911 * 270.24436 * 22 21 20 36 36 H 1.09003 * 109.46865 * 30.24536 * 22 21 20 37 37 H 1.09003 * 109.47381 * 150.24064 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 2.3752 1.6824 4.9211 11 1 1.9278 -0.3587 6.1522 12 1 4.2058 0.2269 5.5615 13 6 2.0400 -0.7212 -1.2491 14 1 1.6767 -1.7489 -1.2491 15 6 3.5700 -0.7207 -1.2494 16 7 1.5517 -0.0306 -2.4454 17 6 1.4230 -0.7031 -3.6063 18 8 1.7127 -1.8827 -3.6610 19 6 0.9318 -0.0075 -4.8110 20 6 0.7620 -0.5699 -6.0442 21 7 0.2974 0.4013 -6.8556 22 6 -0.0363 0.2674 -8.2759 23 7 0.1998 1.5654 -6.0803 24 7 0.5813 1.2880 -4.8822 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 2.2490 -1.6317 1.1527 29 1 3.2468 -2.3964 4.2425 30 1 3.9334 -1.2342 -2.1397 31 1 3.9330 0.3071 -1.2497 32 1 3.9338 -1.2343 -0.3595 33 1 1.3210 0.9105 -2.4018 34 1 0.9596 -1.5962 -6.3163 35 1 0.8463 0.4822 -8.8782 36 1 -0.3738 -0.7496 -8.4755 37 1 -0.8298 0.9700 -8.5305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674661157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:54 Heat of formation + Delta-G solvation = 44.948560 kcal Electronic energy + Delta-G solvation = -19995.545073 eV Core-core repulsion = 16809.542917 eV Total energy + Delta-G solvation = -3186.002156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19667 -40.67533 -38.22508 -35.73878 -35.43968 -33.53101 -32.14763 -30.84445 -30.12858 -28.60816 -25.90456 -25.30552 -23.71816 -23.12331 -21.51077 -21.44731 -19.43853 -19.02320 -17.31061 -17.22242 -16.97343 -16.51070 -15.90491 -15.66849 -15.42818 -15.26323 -14.86624 -14.68679 -14.10560 -14.04373 -13.94339 -13.44625 -13.18656 -13.10835 -12.93084 -12.73796 -12.57483 -12.26500 -12.25430 -12.07802 -11.72781 -11.45621 -11.30820 -11.19814 -10.97684 -10.41176 -10.04134 -8.99358 -7.90052 -5.18747 0.17016 0.61994 1.19613 1.50732 1.50789 1.60757 2.09437 2.25586 2.61076 3.19955 3.44040 3.50663 3.79559 3.91895 3.98422 4.05587 4.22614 4.37169 4.40063 4.51513 4.60961 4.70543 4.76998 4.82258 4.91428 4.97287 5.06693 5.18711 5.33815 5.47020 5.50003 5.52199 5.59624 6.31106 6.45736 6.91246 7.16159 7.37797 8.10314 8.34808 9.33582 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.049249 B = 0.003495 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.407308 B = 8009.123965 C = 8276.778185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 H 0.057 0.943 4 N -0.728 5.728 5 C -0.231 4.231 6 H 0.078 0.922 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.151 3.849 14 H 0.069 0.931 15 C -0.143 4.143 16 N -0.695 5.695 17 C 0.604 3.396 18 O -0.570 6.570 19 C -0.124 4.124 20 C 0.110 3.890 21 N -0.351 5.351 22 C 0.074 3.926 23 N -0.092 5.092 24 N -0.226 5.226 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.373 0.627 29 H 0.250 0.750 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.413 0.587 34 H 0.238 0.762 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 4.299 -25.960 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.075 0.925 4 N -0.369 5.369 5 C -0.363 4.363 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.800 3.200 10 H -0.190 1.190 11 H -0.224 1.224 12 H -0.223 1.223 13 C 0.045 3.955 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.345 5.345 17 C 0.390 3.610 18 O -0.448 6.448 19 C -0.265 4.265 20 C -0.048 4.048 21 N -0.136 5.136 22 C -0.064 4.064 23 N -0.073 5.073 24 N -0.099 5.099 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.206 0.794 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.250 0.750 34 H 0.254 0.746 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.070 5.132 -25.937 27.128 hybrid contribution 0.390 -0.729 1.140 1.408 sum -5.679 4.403 -24.797 25.818 Atomic orbital electron populations 1.22293 0.97630 1.00690 1.00817 1.20533 0.92895 0.95541 0.85163 0.92460 1.42445 1.78419 1.10271 1.05766 1.19612 1.34606 0.94196 0.87897 0.90394 1.25509 1.03109 0.96843 1.01303 1.69827 1.52735 1.10168 1.29270 0.85115 0.76626 0.78255 0.80020 1.18972 1.22427 1.22282 1.20995 0.94367 0.96539 0.83578 0.91253 1.21939 0.94784 1.02099 1.01343 1.45711 1.65591 1.14632 1.08564 1.16991 0.76739 0.85302 0.82005 1.90788 1.52771 1.16083 1.85194 1.21419 1.16658 0.91847 0.96532 1.23845 0.94218 0.97850 0.88896 1.50733 1.42677 1.07241 1.12919 1.22736 1.04782 1.07403 0.71500 1.81907 1.22978 1.06132 0.96264 1.74599 1.09021 1.13589 1.12707 0.94421 0.91522 0.93765 0.79431 0.94151 0.92808 0.92129 0.92518 0.75041 0.74576 0.87347 0.85230 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 9.33 71.98 0.67 -4.93 16 2 C 0.17 6.57 2.52 44.99 0.11 6.69 16 3 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 4 N -0.73 -36.26 4.43 -322.95 -1.43 -37.69 16 5 C -0.23 -12.64 9.93 84.03 0.83 -11.80 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 8 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 9 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 C 0.15 5.33 2.21 44.99 0.10 5.43 16 14 H 0.07 2.74 7.58 -2.39 -0.02 2.72 16 15 C -0.14 -5.11 9.33 71.98 0.67 -4.44 16 16 N -0.69 -20.79 4.38 -445.71 -1.95 -22.75 16 17 C 0.60 18.14 7.78 86.69 0.67 18.81 16 18 O -0.57 -19.95 16.53 -4.00 -0.07 -20.02 16 19 C -0.12 -3.06 6.99 40.82 0.29 -2.77 16 20 C 0.11 1.79 11.31 83.85 0.95 2.74 16 21 N -0.35 -4.92 4.03 -368.57 -1.49 -6.41 16 22 C 0.07 0.15 11.51 127.77 1.47 1.62 16 23 N -0.09 -2.08 13.78 37.02 0.51 -1.57 16 24 N -0.23 -5.89 12.04 -49.99 -0.60 -6.49 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 2.02 7.45 -2.39 -0.02 2.00 16 27 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.37 20.24 7.59 -92.70 -0.70 19.54 16 29 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 2.31 7.45 -2.39 -0.02 2.29 16 33 H 0.41 11.19 8.07 -92.71 -0.75 10.44 16 34 H 0.24 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.13 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -73.79 322.93 3.16 -70.63 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.36 Total: 27.65 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.24 Total: 7.49 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -4.68 Total: -134.04 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.07 Total: -20.02 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.79 3.16 -70.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.578 kcal (2) G-P(sol) polarization free energy of solvation -73.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds