Wall clock time and date at job start Mon Mar 30 2020 00:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47460 * 2 1 4 4 N 1.46498 * 109.47059 * 239.99811 * 2 1 3 5 5 C 1.36939 * 119.99971 * 85.00270 * 4 2 1 6 6 H 1.08005 * 120.00059 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00377 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99915 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00255 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46695 * 90.00632 * 9 7 5 11 11 H 1.48495 * 109.47330 * 210.00161 * 9 7 5 12 12 H 1.48498 * 109.47176 * 330.01040 * 9 7 5 13 13 C 1.52998 * 109.47034 * 120.00181 * 2 1 3 14 14 H 1.09001 * 109.47493 * 184.99953 * 13 2 1 15 15 C 1.53004 * 109.47218 * 65.00045 * 13 2 1 16 16 N 1.46497 * 109.47313 * 305.00044 * 13 2 1 17 17 C 1.34780 * 120.00401 * 205.00070 * 16 13 2 18 18 O 1.21594 * 119.99862 * 0.02562 * 17 16 13 19 19 C 1.47525 * 120.00169 * 179.97438 * 17 16 13 20 20 C 1.36595 * 125.77079 * 180.02562 * 19 17 16 21 21 N 1.34805 * 106.84005 * 180.02562 * 20 19 17 22 22 C 1.46499 * 126.59549 * 179.97438 * 21 20 19 23 23 N 1.40210 * 106.81348 * 0.02562 * 21 20 19 24 24 N 1.28764 * 108.36678 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.47299 * 60.00117 * 1 2 3 26 26 H 1.09003 * 109.47407 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47127 * 299.99711 * 1 2 3 28 28 H 0.96997 * 120.00330 * 264.99780 * 4 2 1 29 29 H 0.97006 * 120.00087 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46622 * 299.99808 * 15 13 2 31 31 H 1.08998 * 109.46991 * 59.99828 * 15 13 2 32 32 H 1.08996 * 109.46898 * 180.02562 * 15 13 2 33 33 H 0.97007 * 119.99697 * 24.99377 * 16 13 2 34 34 H 1.08003 * 126.57517 * 0.02562 * 20 19 17 35 35 H 1.09003 * 109.47074 * 270.00031 * 22 21 20 36 36 H 1.08998 * 109.47455 * 29.99740 * 22 21 20 37 37 H 1.09002 * 109.47512 * 150.00530 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9253 -1.9387 -3.4500 9 14 2.7901 0.2700 -5.1183 10 1 4.1520 0.8559 -5.2031 11 1 2.5804 -0.6616 -6.2555 12 1 1.7794 1.3565 -5.1755 13 6 2.0400 -0.7213 1.2492 14 1 3.1263 -0.6444 1.2952 15 6 1.6352 -2.1955 1.1879 16 7 1.4558 -0.1038 2.4424 17 6 2.0912 -0.1939 3.6276 18 8 3.1495 -0.7874 3.7065 19 6 1.5032 0.4284 4.8290 20 6 2.0435 0.4102 6.0834 21 7 1.1962 1.0877 6.8835 22 6 1.3569 1.3309 8.3192 23 7 0.1309 1.5141 6.0776 24 7 0.3448 1.1085 4.8744 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 3.2486 -2.3960 -4.2420 30 1 0.5489 -2.2724 1.1420 31 1 2.0698 -2.6550 0.3002 32 1 1.9981 -2.7092 2.0781 33 1 0.6117 0.3701 2.3793 34 1 2.9715 -0.0575 6.3776 35 1 0.8923 0.5194 8.8793 36 1 2.4181 1.3796 8.5630 37 1 0.8796 2.2745 8.5836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674661163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:57 Heat of formation + Delta-G solvation = 75.143647 kcal Electronic energy + Delta-G solvation = -20008.836805 eV Core-core repulsion = 16824.144006 eV Total energy + Delta-G solvation = -3184.692799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.37201 -39.42759 -36.83055 -34.94572 -33.82820 -31.84360 -31.07934 -29.34600 -28.13069 -28.03467 -24.55590 -24.01011 -22.69626 -22.36627 -20.44777 -19.17425 -18.23194 -17.33996 -16.49113 -16.29994 -15.62689 -14.88328 -14.85511 -14.48362 -14.19174 -14.06809 -13.66494 -13.46052 -13.35267 -12.74640 -12.37269 -12.34025 -11.89909 -11.56632 -11.48164 -11.22682 -10.91241 -10.77737 -10.65296 -10.42399 -10.21641 -9.99604 -9.90504 -9.61258 -9.48923 -8.90159 -8.73354 -6.96062 -5.74670 -3.03756 0.91719 1.62130 1.77778 3.29606 3.37145 3.46256 3.51550 3.52924 4.05456 4.08507 4.53204 4.58646 4.63379 4.80206 4.83101 5.11939 5.39215 5.52872 5.61765 5.68714 5.73885 5.88936 6.05251 6.14203 6.22596 6.36961 6.48070 6.53364 6.70717 6.79637 6.95924 7.14896 7.59941 7.72968 7.85848 8.35899 8.44260 9.55326 10.11021 10.46202 11.48047 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.044586 B = 0.003502 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.855915 B = 7993.142738 C = 8196.754189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.136 3.864 14 H 0.090 0.910 15 C -0.159 4.159 16 N -0.702 5.702 17 C 0.600 3.400 18 O -0.541 6.541 19 C -0.096 4.096 20 C 0.091 3.909 21 N -0.367 5.367 22 C 0.088 3.912 23 N -0.069 5.069 24 N -0.203 5.203 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.386 0.614 29 H 0.255 0.745 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.406 0.594 34 H 0.206 0.794 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 4.726 23.786 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.031 3.969 14 H 0.108 0.892 15 C -0.218 4.218 16 N -0.353 5.353 17 C 0.383 3.617 18 O -0.418 6.418 19 C -0.235 4.235 20 C -0.066 4.066 21 N -0.152 5.152 22 C -0.053 4.053 23 N -0.049 5.049 24 N -0.077 5.077 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.222 0.778 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.243 0.757 34 H 0.222 0.778 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.940 5.180 23.675 24.553 hybrid contribution 0.676 -0.106 -0.660 0.950 sum -3.265 5.074 23.015 23.793 Atomic orbital electron populations 1.22537 0.99173 1.01320 0.99960 1.20361 0.92293 0.95603 0.86021 0.92953 1.42452 1.78239 1.10779 1.04822 1.19237 1.36635 0.93952 0.87155 0.91106 1.24736 1.02072 0.95995 0.98078 1.69658 1.50817 1.08638 1.28954 0.86183 0.77784 0.78570 0.83601 1.21742 1.21819 1.20773 1.21400 0.99075 0.92961 0.83447 0.89170 1.22148 1.01661 0.95655 1.02301 1.46073 1.25853 1.55654 1.07738 1.16767 0.83850 0.79325 0.81738 1.90808 1.22043 1.43688 1.85273 1.21641 0.96182 1.09918 0.95791 1.23389 0.97404 0.95538 0.90285 1.50370 1.16695 1.37452 1.10682 1.22182 1.04578 1.04651 0.73877 1.82000 1.07208 1.20670 0.95047 1.74643 1.13295 1.07467 1.12306 0.92367 0.92801 0.94563 0.77776 0.93480 0.92439 0.90384 0.93053 0.75702 0.77772 0.89247 0.88388 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.01 37.16 0.33 -2.69 16 2 C 0.17 3.35 2.93 -67.93 -0.20 3.15 16 3 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 4 N -0.72 -17.87 5.03 -53.43 -0.27 -18.14 16 5 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 9 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.14 2.43 2.62 -67.93 -0.18 2.25 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 15 C -0.16 -2.77 9.00 37.16 0.33 -2.44 16 16 N -0.70 -10.93 4.99 -54.85 -0.27 -11.20 16 17 C 0.60 9.38 7.78 -12.47 -0.10 9.28 16 18 O -0.54 -9.75 16.53 5.28 0.09 -9.66 16 19 C -0.10 -1.26 6.99 -83.55 -0.58 -1.84 16 20 C 0.09 0.86 11.31 -16.84 -0.19 0.67 16 21 N -0.37 -3.12 4.03 -67.86 -0.27 -3.39 16 22 C 0.09 0.26 11.51 59.85 0.69 0.95 16 23 N -0.07 -0.84 13.78 60.35 0.83 0.00 16 24 N -0.20 -2.79 12.04 32.85 0.40 -2.40 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.96 6.57 -51.93 -0.34 0.62 16 27 H 0.04 0.54 6.29 -51.93 -0.33 0.21 16 28 H 0.39 10.08 5.77 -40.82 -0.24 9.85 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.06 0.94 6.57 -51.93 -0.34 0.60 16 31 H 0.08 1.49 6.29 -51.93 -0.33 1.16 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.41 5.85 6.26 -40.82 -0.26 5.59 16 34 H 0.21 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -34.16 315.22 -3.91 -38.07 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.72 Total: 9.80 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.14 Total: 2.12 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 1.14 Total: -62.52 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.16 -3.91 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.213 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds