Wall clock time and date at job start Mon Mar 30 2020 00:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47460 * 2 1 4 4 N 1.46498 * 109.47059 * 239.99811 * 2 1 3 5 5 C 1.36939 * 119.99971 * 85.00270 * 4 2 1 6 6 H 1.08005 * 120.00059 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00377 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99915 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00255 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46695 * 90.00632 * 9 7 5 11 11 H 1.48495 * 109.47330 * 210.00161 * 9 7 5 12 12 H 1.48498 * 109.47176 * 330.01040 * 9 7 5 13 13 C 1.52998 * 109.47034 * 120.00181 * 2 1 3 14 14 H 1.09001 * 109.47493 * 184.99953 * 13 2 1 15 15 C 1.53004 * 109.47218 * 65.00045 * 13 2 1 16 16 N 1.46497 * 109.47313 * 305.00044 * 13 2 1 17 17 C 1.34780 * 120.00401 * 205.00070 * 16 13 2 18 18 O 1.21594 * 119.99862 * 0.02562 * 17 16 13 19 19 C 1.47525 * 120.00169 * 179.97438 * 17 16 13 20 20 C 1.36595 * 125.77079 * 180.02562 * 19 17 16 21 21 N 1.34805 * 106.84005 * 180.02562 * 20 19 17 22 22 C 1.46499 * 126.59549 * 179.97438 * 21 20 19 23 23 N 1.40210 * 106.81348 * 0.02562 * 21 20 19 24 24 N 1.28764 * 108.36678 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.47299 * 60.00117 * 1 2 3 26 26 H 1.09003 * 109.47407 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47127 * 299.99711 * 1 2 3 28 28 H 0.96997 * 120.00330 * 264.99780 * 4 2 1 29 29 H 0.97006 * 120.00087 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46622 * 299.99808 * 15 13 2 31 31 H 1.08998 * 109.46991 * 59.99828 * 15 13 2 32 32 H 1.08996 * 109.46898 * 180.02562 * 15 13 2 33 33 H 0.97007 * 119.99697 * 24.99377 * 16 13 2 34 34 H 1.08003 * 126.57517 * 0.02562 * 20 19 17 35 35 H 1.09003 * 109.47074 * 270.00031 * 22 21 20 36 36 H 1.08998 * 109.47455 * 29.99740 * 22 21 20 37 37 H 1.09002 * 109.47512 * 150.00530 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9253 -1.9387 -3.4500 9 14 2.7901 0.2700 -5.1183 10 1 4.1520 0.8559 -5.2031 11 1 2.5804 -0.6616 -6.2555 12 1 1.7794 1.3565 -5.1755 13 6 2.0400 -0.7213 1.2492 14 1 3.1263 -0.6444 1.2952 15 6 1.6352 -2.1955 1.1879 16 7 1.4558 -0.1038 2.4424 17 6 2.0912 -0.1939 3.6276 18 8 3.1495 -0.7874 3.7065 19 6 1.5032 0.4284 4.8290 20 6 2.0435 0.4102 6.0834 21 7 1.1962 1.0877 6.8835 22 6 1.3569 1.3309 8.3192 23 7 0.1309 1.5141 6.0776 24 7 0.3448 1.1085 4.8744 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 3.2486 -2.3960 -4.2420 30 1 0.5489 -2.2724 1.1420 31 1 2.0698 -2.6550 0.3002 32 1 1.9981 -2.7092 2.0781 33 1 0.6117 0.3701 2.3793 34 1 2.9715 -0.0575 6.3776 35 1 0.8923 0.5194 8.8793 36 1 2.4181 1.3796 8.5630 37 1 0.8796 2.2745 8.5836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674661163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:56 Heat of formation + Delta-G solvation = 48.681768 kcal Electronic energy + Delta-G solvation = -20009.984278 eV Core-core repulsion = 16824.144006 eV Total energy + Delta-G solvation = -3185.840272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.20581 -40.73114 -38.38288 -35.74398 -35.44805 -33.55320 -32.12614 -30.83702 -29.79616 -28.62644 -26.16936 -25.55736 -24.05581 -23.14241 -21.59160 -20.66157 -19.56294 -19.06006 -17.27519 -17.21358 -16.90933 -16.59530 -15.99802 -15.84826 -15.58625 -15.29131 -15.12616 -14.56093 -14.14214 -13.96379 -13.87247 -13.47037 -13.14069 -13.05786 -12.98703 -12.78050 -12.63428 -12.27504 -12.11617 -12.01506 -11.65900 -11.58588 -11.31430 -11.20596 -10.93919 -10.42114 -10.04675 -9.01632 -7.91740 -5.20505 0.16319 0.60702 1.19045 1.49642 1.51162 1.59393 2.09448 2.24022 2.59892 3.19001 3.41831 3.50195 3.85491 3.93410 3.97758 4.00964 4.09734 4.34620 4.39967 4.50731 4.61688 4.70381 4.72083 4.78709 4.88681 4.98012 5.04682 5.21433 5.27062 5.46510 5.49070 5.56164 5.62621 6.30434 6.44176 6.90220 7.14731 7.37200 8.10568 8.35183 9.31813 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.044586 B = 0.003502 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.855915 B = 7993.142738 C = 8196.754189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.166 3.834 3 H 0.046 0.954 4 N -0.732 5.732 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.296 1.296 12 H -0.269 1.269 13 C 0.149 3.851 14 H 0.067 0.933 15 C -0.150 4.150 16 N -0.697 5.697 17 C 0.603 3.397 18 O -0.570 6.570 19 C -0.125 4.125 20 C 0.111 3.889 21 N -0.351 5.351 22 C 0.074 3.926 23 N -0.091 5.091 24 N -0.226 5.226 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.378 0.622 29 H 0.251 0.749 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.413 0.587 34 H 0.238 0.762 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 5.789 25.954 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.064 0.936 4 N -0.375 5.375 5 C -0.370 4.370 6 H 0.094 0.906 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.194 1.194 13 C 0.044 3.956 14 H 0.085 0.915 15 C -0.208 4.208 16 N -0.349 5.349 17 C 0.388 3.612 18 O -0.448 6.448 19 C -0.266 4.266 20 C -0.047 4.047 21 N -0.135 5.135 22 C -0.064 4.064 23 N -0.072 5.072 24 N -0.100 5.100 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.212 0.788 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.251 0.749 34 H 0.255 0.745 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.400 6.304 25.913 27.029 hybrid contribution 0.810 -0.385 -1.107 1.425 sum -3.590 5.919 24.806 25.754 Atomic orbital electron populations 1.22363 0.96950 1.01630 1.00925 1.20497 0.93657 0.94927 0.85235 0.93555 1.42621 1.78591 1.10552 1.05690 1.19610 1.35031 0.94260 0.88136 0.90591 1.25527 1.02890 0.96897 1.01388 1.69814 1.52535 1.10151 1.29453 0.85157 0.77790 0.77447 0.79462 1.21637 1.22303 1.19426 1.20985 0.97733 0.93211 0.83658 0.91476 1.22039 1.02202 0.95088 1.01486 1.45893 1.26067 1.55748 1.07191 1.17044 0.83324 0.78673 0.82179 1.90787 1.23249 1.45018 1.85782 1.21416 0.97216 1.11878 0.96042 1.23842 0.97794 0.94050 0.89041 1.50730 1.15062 1.35550 1.12193 1.22740 1.07147 1.05875 0.70668 1.81904 1.08784 1.21455 0.95062 1.74603 1.13830 1.08156 1.13392 0.93705 0.92809 0.91257 0.78807 0.94041 0.91259 0.92467 0.92495 0.74891 0.74533 0.87310 0.85218 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.50 9.01 71.98 0.65 -4.85 16 2 C 0.17 6.62 2.93 44.99 0.13 6.75 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 N -0.73 -36.93 5.03 -322.96 -1.63 -38.55 16 5 C -0.24 -13.27 9.93 84.03 0.83 -12.44 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 7 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 8 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 9 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.15 5.38 2.62 44.99 0.12 5.50 16 14 H 0.07 2.74 7.58 -2.39 -0.02 2.73 16 15 C -0.15 -5.23 9.00 71.98 0.65 -4.58 16 16 N -0.70 -21.31 4.99 -445.70 -2.22 -23.53 16 17 C 0.60 18.42 7.78 86.69 0.67 19.10 16 18 O -0.57 -20.25 16.53 -4.01 -0.07 -20.32 16 19 C -0.13 -3.13 6.99 40.82 0.29 -2.84 16 20 C 0.11 1.82 11.31 83.85 0.95 2.77 16 21 N -0.35 -4.95 4.03 -368.59 -1.49 -6.43 16 22 C 0.07 0.15 11.51 127.77 1.47 1.62 16 23 N -0.09 -2.07 13.78 37.02 0.51 -1.56 16 24 N -0.23 -5.97 12.04 -49.99 -0.60 -6.57 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.86 6.57 -2.39 -0.02 1.84 16 27 H 0.07 1.93 6.29 -2.39 -0.02 1.91 16 28 H 0.38 20.27 5.77 -92.71 -0.54 19.73 16 29 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 30 H 0.07 2.22 6.57 -2.39 -0.02 2.21 16 31 H 0.06 2.24 6.29 -2.39 -0.02 2.23 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.41 11.44 6.26 -92.70 -0.58 10.86 16 34 H 0.24 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.13 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -74.85 315.22 3.04 -71.81 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.01 Total: 28.70 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.23 Total: 7.18 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -5.14 Total: -135.95 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.07 Total: -20.32 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -74.85 3.04 -71.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.492 kcal (2) G-P(sol) polarization free energy of solvation -74.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds