Wall clock time and date at job start Mon Mar 30 2020 00:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 C 1.52993 * 109.47211 * 239.98955 * 2 1 3 5 5 N 1.46504 * 109.47347 * 185.00106 * 4 2 1 6 6 C 1.46500 * 119.99911 * 270.00686 * 5 4 2 7 7 C 1.34771 * 120.00151 * 90.00175 * 5 4 2 8 8 O 1.21603 * 119.99913 * 356.67843 * 7 5 4 9 9 C 1.47519 * 120.00066 * 176.67719 * 7 5 4 10 10 C 1.36599 * 125.76997 * 185.72068 * 9 7 5 11 11 N 1.34815 * 106.84125 * 179.89837 * 10 9 7 12 12 C 1.46503 * 126.59621 * 180.10998 * 11 10 9 13 13 N 1.40204 * 106.80785 * 0.35955 * 11 10 9 14 14 N 1.28758 * 108.37143 * 359.77120 * 13 11 10 15 15 N 1.46507 * 109.46745 * 119.99468 * 2 1 3 16 16 C 1.36937 * 119.99756 * 274.99673 * 15 2 1 17 17 H 1.07998 * 120.00454 * 0.02562 * 16 15 2 18 18 C 1.38818 * 119.99704 * 180.02562 * 16 15 2 19 19 N 1.31619 * 119.99869 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00118 * 359.97438 * 18 16 15 21 21 H 1.48489 * 109.46871 * 90.00180 * 20 18 16 22 22 H 1.48501 * 109.46876 * 210.00552 * 20 18 16 23 23 H 1.48496 * 109.46923 * 330.00007 * 20 18 16 24 24 H 1.09003 * 109.46995 * 300.00250 * 1 2 3 25 25 H 1.08999 * 109.46888 * 60.00670 * 1 2 3 26 26 H 1.08995 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47629 * 305.00514 * 4 2 1 28 28 H 1.08998 * 109.46769 * 65.00479 * 4 2 1 29 29 H 1.08999 * 109.47447 * 95.64246 * 6 5 4 30 30 H 1.08998 * 109.46805 * 215.64559 * 6 5 4 31 31 H 1.08998 * 109.47118 * 335.64211 * 6 5 4 32 32 H 1.08001 * 126.58052 * 0.03639 * 10 9 7 33 33 H 1.08999 * 109.46854 * 270.27441 * 12 11 10 34 34 H 1.09001 * 109.47002 * 30.26661 * 12 11 10 35 35 H 1.08994 * 109.46968 * 150.27159 * 12 11 10 36 36 H 0.96999 * 119.99980 * 95.00126 * 15 2 1 37 37 H 0.96997 * 119.99941 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2490 5 7 3.5001 -0.8266 -1.1904 6 6 4.3344 0.2338 -1.7611 7 6 4.0758 -1.8988 -0.6113 8 8 3.3848 -2.7493 -0.0841 9 6 5.5441 -2.0406 -0.6169 10 6 6.2434 -3.1240 -0.1661 11 7 7.5503 -2.8503 -0.3522 12 6 8.6809 -3.7209 -0.0201 13 7 7.6197 -1.5700 -0.9193 14 7 6.4204 -1.1234 -1.0610 15 7 2.0183 -0.6905 1.1963 16 6 2.1491 -0.0072 2.3758 17 1 1.8919 1.0406 2.4243 18 6 2.6122 -0.6614 3.5092 19 7 2.7375 -0.0048 4.6430 20 14 3.0564 -2.4740 3.4255 21 1 4.4888 -2.6162 3.0612 22 1 2.8171 -3.1037 4.7489 23 1 2.2159 -3.1427 2.4000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -1.7200 -1.2949 28 1 1.7517 -0.1586 -2.1368 29 1 4.6232 0.9317 -0.9752 30 1 5.2284 -0.2057 -2.2033 31 1 3.7723 0.7644 -2.5296 32 1 5.8288 -4.0275 0.2561 33 1 9.0042 -3.5226 1.0018 34 1 8.3749 -4.7633 -0.1085 35 1 9.5045 -3.5245 -0.7064 36 1 2.2490 -1.6317 1.1528 37 1 3.0614 -0.4618 5.4349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676341566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:35 Heat of formation + Delta-G solvation = 97.869854 kcal Electronic energy + Delta-G solvation = -21222.118064 eV Core-core repulsion = 18038.410747 eV Total energy + Delta-G solvation = -3183.707317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15869 -39.31926 -36.07058 -34.93876 -34.18398 -31.90892 -30.86791 -29.26042 -28.12929 -26.82313 -25.74363 -23.35190 -22.66680 -22.20526 -20.15503 -19.35658 -17.74416 -17.26740 -16.34860 -16.03369 -15.85613 -15.03518 -14.67056 -14.48595 -13.87638 -13.65040 -13.46219 -13.21264 -12.77453 -12.71918 -12.53656 -12.27802 -12.00898 -11.97676 -11.48217 -11.39269 -10.77817 -10.74495 -10.52297 -10.44664 -10.35034 -9.89225 -9.66540 -9.39756 -9.19169 -8.77442 -8.14479 -7.05837 -5.62034 -2.93966 1.16201 1.86474 2.01522 3.28782 3.52512 3.55952 3.63209 3.73455 4.24550 4.30960 4.73879 4.75308 4.78274 5.00882 5.02780 5.27626 5.35665 5.52117 5.60080 5.64497 5.68184 5.96369 5.98618 6.07303 6.26313 6.27779 6.32336 6.37881 6.54750 6.80950 6.91911 7.13240 7.68537 7.97689 8.18171 8.51320 8.59592 9.43927 10.16568 10.39450 11.56486 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.008298 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.900570 B = 3373.612866 C = 4423.348707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.107 3.893 5 N -0.589 5.589 6 C 0.076 3.924 7 C 0.607 3.393 8 O -0.534 6.534 9 C -0.087 4.087 10 C 0.090 3.910 11 N -0.365 5.365 12 C 0.089 3.911 13 N -0.075 5.075 14 N -0.200 5.200 15 N -0.747 5.747 16 C -0.232 4.232 17 H 0.086 0.914 18 C 0.001 3.999 19 N -0.940 5.940 20 Si 0.880 3.120 21 H -0.290 1.290 22 H -0.299 1.299 23 H -0.264 1.264 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.203 0.797 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.377 0.623 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 -7.040 -15.267 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 H 0.071 0.929 4 C -0.016 4.016 5 N -0.319 5.319 6 C -0.068 4.068 7 C 0.393 3.607 8 O -0.410 6.410 9 C -0.226 4.226 10 C -0.066 4.066 11 N -0.151 5.151 12 C -0.053 4.053 13 N -0.055 5.055 14 N -0.074 5.074 15 N -0.395 5.395 16 C -0.363 4.363 17 H 0.104 0.896 18 C -0.194 4.194 19 N -0.589 5.589 20 Si 0.711 3.289 21 H -0.218 1.218 22 H -0.226 1.226 23 H -0.189 1.189 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.215 0.785 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.590 -6.269 -15.351 19.155 hybrid contribution -0.104 -1.971 0.744 2.109 sum 9.487 -8.240 -14.607 19.268 Atomic orbital electron populations 1.22374 0.98545 1.00999 1.00482 1.20618 0.92174 0.95983 0.86427 0.92860 1.21996 0.78544 1.02251 0.98774 1.47376 1.07037 1.20398 1.57133 1.22153 0.95544 0.90649 0.98446 1.16649 0.84090 0.81939 0.78066 1.90746 1.62776 1.42742 1.44782 1.21497 0.95895 0.93542 1.11705 1.23352 0.83480 1.01542 0.98232 1.50293 1.06520 1.15090 1.43175 1.22167 0.86927 0.92788 1.03372 1.81940 1.15153 0.91081 1.17318 1.74705 0.96374 1.23351 1.12943 1.43093 1.79310 1.10614 1.06466 1.19087 1.35854 0.95326 0.86001 0.89619 1.24611 1.01803 0.97412 0.95581 1.69721 1.53476 1.35483 1.00206 0.86542 0.78822 0.87387 0.76138 1.21754 1.22578 1.18884 0.92183 0.94233 0.93456 0.90171 0.90309 0.92202 0.88956 0.91792 0.78043 0.89250 0.88513 0.88172 0.78513 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.49 37.16 0.35 -2.61 16 2 C 0.16 3.22 3.20 -67.93 -0.22 3.01 16 3 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 4 C 0.11 1.80 5.18 -4.04 -0.02 1.77 16 5 N -0.59 -10.35 2.77 -182.82 -0.51 -10.86 16 6 C 0.08 1.11 9.65 59.85 0.58 1.68 16 7 C 0.61 11.86 7.04 -12.48 -0.09 11.77 16 8 O -0.53 -11.79 13.60 5.27 0.07 -11.72 16 9 C -0.09 -1.52 6.70 -83.55 -0.56 -2.08 16 10 C 0.09 1.29 11.31 -16.83 -0.19 1.10 16 11 N -0.37 -4.49 4.03 -67.85 -0.27 -4.76 16 12 C 0.09 0.56 11.51 59.85 0.69 1.25 16 13 N -0.07 -1.14 13.78 60.35 0.83 -0.31 16 14 N -0.20 -3.35 8.80 32.85 0.29 -3.06 16 15 N -0.75 -19.24 4.33 -53.42 -0.23 -19.47 16 16 C -0.23 -6.98 10.41 -15.06 -0.16 -7.14 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 19 N -0.94 -31.15 13.97 55.49 0.78 -30.38 16 20 Si 0.88 24.50 27.33 -169.99 -4.65 19.85 16 21 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16 22 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 23 H -0.26 -7.25 6.52 56.52 0.37 -6.88 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.39 7.47 -51.93 -0.39 1.00 16 28 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.32 5.27 -51.93 -0.27 1.05 16 31 H 0.06 0.74 7.83 -51.93 -0.41 0.33 16 32 H 0.20 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.38 9.97 2.75 -40.82 -0.11 9.86 16 37 H 0.26 8.10 8.31 -40.82 -0.34 7.76 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -38.48 310.01 -3.71 -42.19 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.98 Total: 5.16 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 0.29 Total: 8.69 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: 0.88 Total: -68.84 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.65 Total: 19.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -38.48 -3.71 -42.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676341566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.063 kcal (2) G-P(sol) polarization free energy of solvation -38.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds