Wall clock time and date at job start Mon Mar 30 2020 00:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 C 1.52993 * 109.47211 * 239.98955 * 2 1 3 5 5 N 1.46504 * 109.47347 * 185.00106 * 4 2 1 6 6 C 1.46500 * 119.99911 * 270.00686 * 5 4 2 7 7 C 1.34771 * 120.00151 * 90.00175 * 5 4 2 8 8 O 1.21603 * 119.99913 * 356.67843 * 7 5 4 9 9 C 1.47519 * 120.00066 * 176.67719 * 7 5 4 10 10 C 1.36599 * 125.76997 * 185.72068 * 9 7 5 11 11 N 1.34815 * 106.84125 * 179.89837 * 10 9 7 12 12 C 1.46503 * 126.59621 * 180.10998 * 11 10 9 13 13 N 1.40204 * 106.80785 * 0.35955 * 11 10 9 14 14 N 1.28758 * 108.37143 * 359.77120 * 13 11 10 15 15 N 1.46507 * 109.46745 * 119.99468 * 2 1 3 16 16 C 1.36937 * 119.99756 * 274.99673 * 15 2 1 17 17 H 1.07998 * 120.00454 * 0.02562 * 16 15 2 18 18 C 1.38818 * 119.99704 * 180.02562 * 16 15 2 19 19 N 1.31619 * 119.99869 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00118 * 359.97438 * 18 16 15 21 21 H 1.48489 * 109.46871 * 90.00180 * 20 18 16 22 22 H 1.48501 * 109.46876 * 210.00552 * 20 18 16 23 23 H 1.48496 * 109.46923 * 330.00007 * 20 18 16 24 24 H 1.09003 * 109.46995 * 300.00250 * 1 2 3 25 25 H 1.08999 * 109.46888 * 60.00670 * 1 2 3 26 26 H 1.08995 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47629 * 305.00514 * 4 2 1 28 28 H 1.08998 * 109.46769 * 65.00479 * 4 2 1 29 29 H 1.08999 * 109.47447 * 95.64246 * 6 5 4 30 30 H 1.08998 * 109.46805 * 215.64559 * 6 5 4 31 31 H 1.08998 * 109.47118 * 335.64211 * 6 5 4 32 32 H 1.08001 * 126.58052 * 0.03639 * 10 9 7 33 33 H 1.08999 * 109.46854 * 270.27441 * 12 11 10 34 34 H 1.09001 * 109.47002 * 30.26661 * 12 11 10 35 35 H 1.08994 * 109.46968 * 150.27159 * 12 11 10 36 36 H 0.96999 * 119.99980 * 95.00126 * 15 2 1 37 37 H 0.96997 * 119.99941 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2490 5 7 3.5001 -0.8266 -1.1904 6 6 4.3344 0.2338 -1.7611 7 6 4.0758 -1.8988 -0.6113 8 8 3.3848 -2.7493 -0.0841 9 6 5.5441 -2.0406 -0.6169 10 6 6.2434 -3.1240 -0.1661 11 7 7.5503 -2.8503 -0.3522 12 6 8.6809 -3.7209 -0.0201 13 7 7.6197 -1.5700 -0.9193 14 7 6.4204 -1.1234 -1.0610 15 7 2.0183 -0.6905 1.1963 16 6 2.1491 -0.0072 2.3758 17 1 1.8919 1.0406 2.4243 18 6 2.6122 -0.6614 3.5092 19 7 2.7375 -0.0048 4.6430 20 14 3.0564 -2.4740 3.4255 21 1 4.4888 -2.6162 3.0612 22 1 2.8171 -3.1037 4.7489 23 1 2.2159 -3.1427 2.4000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -1.7200 -1.2949 28 1 1.7517 -0.1586 -2.1368 29 1 4.6232 0.9317 -0.9752 30 1 5.2284 -0.2057 -2.2033 31 1 3.7723 0.7644 -2.5296 32 1 5.8288 -4.0275 0.2561 33 1 9.0042 -3.5226 1.0018 34 1 8.3749 -4.7633 -0.1085 35 1 9.5045 -3.5245 -0.7064 36 1 2.2490 -1.6317 1.1528 37 1 3.0614 -0.4618 5.4349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676341566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:35 Heat of formation + Delta-G solvation = 68.445335 kcal Electronic energy + Delta-G solvation = -21223.394007 eV Core-core repulsion = 18038.410747 eV Total energy + Delta-G solvation = -3184.983260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.26741 -40.72459 -37.70030 -36.27665 -35.46091 -33.99152 -32.08344 -31.18700 -29.04020 -28.02320 -27.03785 -25.42957 -23.99131 -23.22719 -21.72212 -20.77202 -19.76962 -18.54822 -17.52058 -17.29323 -17.09768 -16.63590 -16.42334 -15.64786 -15.59364 -14.95013 -14.65455 -14.52239 -14.23598 -14.02372 -13.95989 -13.69554 -13.52854 -13.23730 -13.03628 -12.89699 -12.74044 -12.32564 -12.16586 -11.89385 -11.78339 -11.76923 -11.33668 -11.11111 -10.97809 -10.37644 -9.57032 -9.21587 -8.03087 -5.30502 0.09532 0.60086 1.14431 1.30818 1.32631 1.51371 2.02236 2.26712 2.47794 3.16084 3.28706 3.41194 3.71243 3.79657 3.93848 4.14971 4.30019 4.32843 4.40669 4.48312 4.61601 4.64012 4.67692 4.68643 4.85289 4.92262 5.05915 5.17557 5.26966 5.40783 5.49018 5.68983 5.80388 6.23311 6.34340 6.81788 7.10280 7.17730 7.96569 8.16112 9.19033 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.008298 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.900570 B = 3373.612866 C = 4423.348707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.045 0.955 4 C 0.112 3.888 5 N -0.592 5.592 6 C 0.078 3.922 7 C 0.596 3.404 8 O -0.569 6.569 9 C -0.123 4.123 10 C 0.096 3.904 11 N -0.349 5.349 12 C 0.074 3.926 13 N -0.091 5.091 14 N -0.215 5.215 15 N -0.754 5.754 16 C -0.212 4.212 17 H 0.057 0.943 18 C -0.066 4.066 19 N -0.985 5.985 20 Si 0.945 3.055 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.260 1.260 24 H 0.031 0.969 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.129 0.871 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.227 0.773 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.375 0.625 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.643 -8.453 -17.357 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.063 0.937 4 C -0.010 4.010 5 N -0.322 5.322 6 C -0.065 4.065 7 C 0.383 3.617 8 O -0.448 6.448 9 C -0.262 4.262 10 C -0.062 4.062 11 N -0.134 5.134 12 C -0.065 4.065 13 N -0.071 5.071 14 N -0.088 5.088 15 N -0.402 5.402 16 C -0.344 4.344 17 H 0.075 0.925 18 C -0.257 4.257 19 N -0.638 5.638 20 Si 0.774 3.226 21 H -0.211 1.211 22 H -0.225 1.225 23 H -0.185 1.185 24 H 0.050 0.950 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.243 0.757 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.213 0.787 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.288 -7.662 -17.516 21.711 hybrid contribution -0.261 -1.471 1.318 1.992 sum 10.027 -9.133 -16.198 21.126 Atomic orbital electron populations 1.22212 0.96474 1.01283 1.01380 1.20993 0.93618 0.95584 0.86085 0.93659 1.22041 0.78157 1.02318 0.98514 1.47579 1.07650 1.20436 1.56493 1.22237 0.96139 0.89708 0.98408 1.17069 0.85007 0.81988 0.77617 1.90695 1.63722 1.43969 1.46442 1.21525 0.95346 0.95212 1.14157 1.23733 0.83970 1.01441 0.97101 1.50668 1.07285 1.14372 1.41124 1.22746 0.85789 0.93555 1.04396 1.81831 1.14645 0.92647 1.18003 1.74672 0.96682 1.23854 1.13613 1.43219 1.79636 1.10621 1.06752 1.19101 1.33391 0.94255 0.87622 0.92475 1.25312 1.03295 1.01592 0.95506 1.69871 1.55743 1.37189 1.00965 0.85516 0.78705 0.82479 0.75893 1.21141 1.22507 1.18506 0.94969 0.89634 0.93447 0.90542 0.85314 0.94467 0.88619 0.88075 0.75703 0.88169 0.85159 0.86377 0.78675 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.49 71.98 0.68 -4.58 16 2 C 0.15 5.74 3.20 44.99 0.14 5.88 16 3 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 4 C 0.11 3.46 5.18 86.38 0.45 3.91 16 5 N -0.59 -19.91 2.77 -850.57 -2.36 -22.27 16 6 C 0.08 2.15 9.65 127.77 1.23 3.38 16 7 C 0.60 22.79 7.04 86.69 0.61 23.40 16 8 O -0.57 -24.63 13.60 -4.04 -0.05 -24.69 16 9 C -0.12 -4.17 6.70 40.82 0.27 -3.90 16 10 C 0.10 2.55 11.31 83.85 0.95 3.50 16 11 N -0.35 -7.79 4.03 -368.59 -1.49 -9.28 16 12 C 0.07 0.68 11.51 127.77 1.47 2.16 16 13 N -0.09 -2.65 13.78 37.02 0.51 -2.14 16 14 N -0.21 -7.05 8.80 -50.00 -0.44 -7.49 16 15 N -0.75 -38.75 4.33 -322.93 -1.40 -40.15 16 16 C -0.21 -13.00 10.41 84.03 0.87 -12.13 16 17 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.99 -67.00 13.97 21.65 0.30 -66.70 16 20 Si 0.94 51.55 27.33 68.60 1.87 53.43 16 21 H -0.28 -15.08 7.11 99.48 0.71 -14.38 16 22 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 23 H -0.26 -13.88 6.52 99.48 0.65 -13.23 16 24 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 2.46 7.47 -2.39 -0.02 2.44 16 28 H 0.13 2.68 7.86 -2.39 -0.02 2.66 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 2.63 5.27 -2.39 -0.01 2.62 16 31 H 0.10 2.00 7.83 -2.39 -0.02 1.98 16 32 H 0.23 4.70 8.06 -2.91 -0.02 4.67 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.38 19.66 2.75 -92.71 -0.26 19.41 16 37 H 0.25 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -86.13 310.01 4.87 -81.26 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.77 Total: 20.16 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 7.15 Total: 17.86 kcal Atomic # 7 Polarization: -143.14 SS G_CDS: -4.87 Total: -148.02 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 1.87 Total: 53.43 kcal Total: -86.13 4.87 -81.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676341566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.705 kcal (2) G-P(sol) polarization free energy of solvation -86.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds