Wall clock time and date at job start Mon Mar 30 2020 00:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46930 * 2 1 4 4 C 1.52997 * 109.46738 * 119.99673 * 2 1 3 5 5 N 1.46497 * 109.47220 * 175.00026 * 4 2 1 6 6 C 1.46508 * 119.99857 * 270.00049 * 5 4 2 7 7 C 1.34781 * 120.00280 * 89.99641 * 5 4 2 8 8 O 1.21592 * 120.00004 * 356.18932 * 7 5 4 9 9 C 1.47524 * 120.00098 * 176.19085 * 7 5 4 10 10 C 1.36595 * 125.76834 * 185.90078 * 9 7 5 11 11 N 1.34811 * 106.83480 * 179.89495 * 10 9 7 12 12 C 1.46501 * 126.59409 * 180.12949 * 11 10 9 13 13 N 1.40207 * 106.81431 * 0.36187 * 11 10 9 14 14 N 1.28758 * 108.36963 * 359.76659 * 13 11 10 15 15 N 1.46495 * 109.47145 * 239.99375 * 2 1 3 16 16 C 1.36936 * 120.00045 * 85.00162 * 15 2 1 17 17 H 1.08004 * 120.00035 * 0.02562 * 16 15 2 18 18 C 1.38807 * 120.00214 * 180.02562 * 16 15 2 19 19 N 1.31620 * 120.00164 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47051 * 90.00178 * 20 18 16 22 22 H 1.48505 * 109.47173 * 209.99907 * 20 18 16 23 23 H 1.48497 * 109.47115 * 330.00472 * 20 18 16 24 24 H 1.08999 * 109.47069 * 300.00739 * 1 2 3 25 25 H 1.08993 * 109.47642 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47206 * 60.00248 * 1 2 3 27 27 H 1.09005 * 109.47184 * 294.99725 * 4 2 1 28 28 H 1.08999 * 109.47648 * 54.99706 * 4 2 1 29 29 H 1.08995 * 109.47096 * 95.71967 * 6 5 4 30 30 H 1.08995 * 109.47046 * 215.71888 * 6 5 4 31 31 H 1.08994 * 109.46999 * 335.71975 * 6 5 4 32 32 H 1.07997 * 126.58343 * 0.04039 * 10 9 7 33 33 H 1.08998 * 109.47400 * 270.25436 * 12 11 10 34 34 H 1.09008 * 109.46870 * 30.25003 * 12 11 10 35 35 H 1.08998 * 109.47445 * 150.24501 * 12 11 10 36 36 H 0.96997 * 120.00033 * 265.00839 * 15 2 1 37 37 H 0.97001 * 120.00192 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9921 0.5614 7 6 4.2675 0.1492 1.7157 8 8 3.7501 1.1488 2.1757 9 6 5.7356 0.0044 1.7322 10 6 6.6155 0.8598 2.3319 11 7 7.8506 0.3648 2.1150 12 6 9.1162 0.9430 2.5736 13 7 7.6914 -0.8068 1.3615 14 7 6.4336 -0.9884 1.1547 15 7 2.0184 -0.6907 -1.1960 16 6 2.1492 -0.0077 -2.3757 17 1 1.8927 1.0403 -2.4242 18 6 2.6114 -0.6623 -3.5091 19 7 2.7366 -0.0059 -4.6431 20 14 3.0542 -2.4751 -3.4255 21 1 1.8563 -3.2926 -3.7450 22 1 4.1295 -2.7678 -4.4071 23 1 3.5289 -2.8061 -2.0579 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.7516 -0.1581 2.1370 28 1 1.6053 -1.7197 1.2953 29 1 4.3724 -1.7573 -0.4740 30 1 5.0360 -2.2518 1.1018 31 1 3.4344 -2.8343 0.5883 32 1 6.3691 1.7587 2.8774 33 1 9.4936 1.6348 1.8205 34 1 8.9533 1.4780 3.5093 35 1 9.8432 0.1466 2.7323 36 1 2.2489 -1.6319 -1.1524 37 1 3.0600 -0.4632 -5.4351 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676341567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:38 Heat of formation + Delta-G solvation = 96.381670 kcal Electronic energy + Delta-G solvation = -20848.521570 eV Core-core repulsion = 17664.749721 eV Total energy + Delta-G solvation = -3183.771849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.21079 -39.30355 -36.37822 -34.91493 -34.06955 -32.00677 -30.93405 -29.44084 -28.17036 -26.72869 -25.80423 -23.46740 -22.59481 -22.27403 -20.28739 -19.45854 -17.62240 -17.40354 -16.38804 -16.14884 -15.88806 -15.03946 -14.77564 -14.44960 -13.89417 -13.82333 -13.49343 -13.37444 -12.97082 -12.56428 -12.49582 -12.22406 -12.12974 -11.97067 -11.55172 -11.36328 -10.88923 -10.73288 -10.59611 -10.49558 -10.40209 -9.91822 -9.76289 -9.48421 -9.27525 -8.86774 -8.16577 -7.15429 -5.68056 -3.02342 1.10213 1.81971 1.96482 3.28258 3.42662 3.44370 3.51488 3.52852 4.19288 4.25762 4.66446 4.67693 4.68747 4.93428 4.96736 5.25204 5.31226 5.54471 5.58422 5.64568 5.64963 5.79691 6.04951 6.18253 6.24368 6.27924 6.29538 6.49209 6.54883 6.82769 6.87782 7.13932 7.66818 7.94621 8.09134 8.44019 8.50658 9.29832 10.02123 10.22467 11.50709 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.006443 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.803942 B = 4344.690976 C = 5155.409840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.061 0.939 4 C 0.109 3.891 5 N -0.581 5.581 6 C 0.071 3.929 7 C 0.602 3.398 8 O -0.547 6.547 9 C -0.089 4.089 10 C 0.089 3.911 11 N -0.367 5.367 12 C 0.089 3.911 13 N -0.074 5.074 14 N -0.197 5.197 15 N -0.744 5.744 16 C -0.234 4.234 17 H 0.088 0.912 18 C 0.002 3.998 19 N -0.937 5.937 20 Si 0.878 3.122 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.270 1.270 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.204 0.796 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.359 0.641 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -0.600 18.482 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 H 0.079 0.921 4 C -0.015 4.015 5 N -0.311 5.311 6 C -0.072 4.072 7 C 0.388 3.612 8 O -0.425 6.425 9 C -0.228 4.228 10 C -0.068 4.068 11 N -0.152 5.152 12 C -0.052 4.052 13 N -0.054 5.054 14 N -0.071 5.071 15 N -0.387 5.387 16 C -0.364 4.364 17 H 0.106 0.894 18 C -0.193 4.193 19 N -0.586 5.586 20 Si 0.709 3.291 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.196 1.196 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.221 0.779 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.192 0.808 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.106 -1.062 17.876 20.562 hybrid contribution 0.045 -0.432 0.148 0.459 sum 10.151 -1.494 18.023 20.739 Atomic orbital electron populations 1.22339 0.98302 1.00828 1.00774 1.20619 0.92112 0.96615 0.85717 0.92141 1.21984 0.78311 1.01360 0.99803 1.47402 1.06623 1.21197 1.55849 1.22368 0.98506 0.86420 0.99929 1.16705 0.83388 0.82903 0.78237 1.90764 1.73504 1.28871 1.49311 1.21531 0.96276 0.96648 1.08339 1.23310 0.83744 1.00031 0.99705 1.50352 1.07272 1.19682 1.37876 1.22158 0.81957 0.99980 1.01133 1.82015 1.11396 0.99766 1.12182 1.74802 0.98351 1.19742 1.14175 1.42730 1.79711 1.09252 1.07043 1.19060 1.36326 0.95518 0.85469 0.89427 1.24642 1.01688 0.97397 0.95582 1.69703 1.53156 1.35469 1.00243 0.86678 0.78002 0.87056 0.77358 1.21380 1.21947 1.19569 0.93983 0.93596 0.92110 0.89706 0.90788 0.90941 0.89116 0.92050 0.77914 0.89269 0.88537 0.88226 0.80804 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.16 3.22 3.20 -67.93 -0.22 3.01 16 3 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 4 C 0.11 1.83 5.04 -4.04 -0.02 1.81 16 5 N -0.58 -10.35 2.73 -182.81 -0.50 -10.85 16 6 C 0.07 1.22 8.12 59.85 0.49 1.71 16 7 C 0.60 10.90 7.66 -12.47 -0.10 10.80 16 8 O -0.55 -10.69 16.49 5.29 0.09 -10.60 16 9 C -0.09 -1.42 6.70 -83.55 -0.56 -1.98 16 10 C 0.09 1.05 11.31 -16.84 -0.19 0.86 16 11 N -0.37 -3.95 4.03 -67.85 -0.27 -4.23 16 12 C 0.09 0.43 11.51 59.85 0.69 1.12 16 13 N -0.07 -1.09 13.78 60.35 0.83 -0.25 16 14 N -0.20 -3.28 8.79 32.85 0.29 -3.00 16 15 N -0.74 -17.78 4.28 -53.43 -0.23 -18.01 16 16 C -0.23 -6.73 10.41 -15.06 -0.16 -6.89 16 17 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 18 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 19 N -0.94 -30.18 13.97 55.49 0.78 -29.41 16 20 Si 0.88 22.35 27.74 -169.99 -4.71 17.63 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 23 H -0.27 -6.21 5.23 56.52 0.30 -5.92 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.33 7.48 -51.93 -0.39 0.95 16 28 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 29 H 0.07 1.49 6.58 -51.93 -0.34 1.15 16 30 H 0.09 1.47 5.25 -51.93 -0.27 1.19 16 31 H 0.06 0.94 7.83 -51.93 -0.41 0.53 16 32 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.20 8.14 -51.92 -0.42 -0.23 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.36 8.31 4.25 -40.82 -0.17 8.13 16 37 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -36.54 310.81 -3.89 -40.43 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.03 Total: 5.73 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 0.19 Total: 7.88 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 0.89 Total: -65.75 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.54 -3.89 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676341567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.810 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds