Wall clock time and date at job start Mon Mar 30 2020 00:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46930 * 2 1 4 4 C 1.52997 * 109.46738 * 119.99673 * 2 1 3 5 5 N 1.46497 * 109.47220 * 175.00026 * 4 2 1 6 6 C 1.46508 * 119.99857 * 270.00049 * 5 4 2 7 7 C 1.34781 * 120.00280 * 89.99641 * 5 4 2 8 8 O 1.21592 * 120.00004 * 356.18932 * 7 5 4 9 9 C 1.47524 * 120.00098 * 176.19085 * 7 5 4 10 10 C 1.36595 * 125.76834 * 185.90078 * 9 7 5 11 11 N 1.34811 * 106.83480 * 179.89495 * 10 9 7 12 12 C 1.46501 * 126.59409 * 180.12949 * 11 10 9 13 13 N 1.40207 * 106.81431 * 0.36187 * 11 10 9 14 14 N 1.28758 * 108.36963 * 359.76659 * 13 11 10 15 15 N 1.46495 * 109.47145 * 239.99375 * 2 1 3 16 16 C 1.36936 * 120.00045 * 85.00162 * 15 2 1 17 17 H 1.08004 * 120.00035 * 0.02562 * 16 15 2 18 18 C 1.38807 * 120.00214 * 180.02562 * 16 15 2 19 19 N 1.31620 * 120.00164 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47051 * 90.00178 * 20 18 16 22 22 H 1.48505 * 109.47173 * 209.99907 * 20 18 16 23 23 H 1.48497 * 109.47115 * 330.00472 * 20 18 16 24 24 H 1.08999 * 109.47069 * 300.00739 * 1 2 3 25 25 H 1.08993 * 109.47642 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47206 * 60.00248 * 1 2 3 27 27 H 1.09005 * 109.47184 * 294.99725 * 4 2 1 28 28 H 1.08999 * 109.47648 * 54.99706 * 4 2 1 29 29 H 1.08995 * 109.47096 * 95.71967 * 6 5 4 30 30 H 1.08995 * 109.47046 * 215.71888 * 6 5 4 31 31 H 1.08994 * 109.46999 * 335.71975 * 6 5 4 32 32 H 1.07997 * 126.58343 * 0.04039 * 10 9 7 33 33 H 1.08998 * 109.47400 * 270.25436 * 12 11 10 34 34 H 1.09008 * 109.46870 * 30.25003 * 12 11 10 35 35 H 1.08998 * 109.47445 * 150.24501 * 12 11 10 36 36 H 0.96997 * 120.00033 * 265.00839 * 15 2 1 37 37 H 0.97001 * 120.00192 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9921 0.5614 7 6 4.2675 0.1492 1.7157 8 8 3.7501 1.1488 2.1757 9 6 5.7356 0.0044 1.7322 10 6 6.6155 0.8598 2.3319 11 7 7.8506 0.3648 2.1150 12 6 9.1162 0.9430 2.5736 13 7 7.6914 -0.8068 1.3615 14 7 6.4336 -0.9884 1.1547 15 7 2.0184 -0.6907 -1.1960 16 6 2.1492 -0.0077 -2.3757 17 1 1.8927 1.0403 -2.4242 18 6 2.6114 -0.6623 -3.5091 19 7 2.7366 -0.0059 -4.6431 20 14 3.0542 -2.4751 -3.4255 21 1 1.8563 -3.2926 -3.7450 22 1 4.1295 -2.7678 -4.4071 23 1 3.5289 -2.8061 -2.0579 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.7516 -0.1581 2.1370 28 1 1.6053 -1.7197 1.2953 29 1 4.3724 -1.7573 -0.4740 30 1 5.0360 -2.2518 1.1018 31 1 3.4344 -2.8343 0.5883 32 1 6.3691 1.7587 2.8774 33 1 9.4936 1.6348 1.8205 34 1 8.9533 1.4780 3.5093 35 1 9.8432 0.1466 2.7323 36 1 2.2489 -1.6319 -1.1524 37 1 3.0600 -0.4632 -5.4351 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676341567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:37 Heat of formation + Delta-G solvation = 68.318388 kcal Electronic energy + Delta-G solvation = -20849.738485 eV Core-core repulsion = 17664.749721 eV Total energy + Delta-G solvation = -3184.988764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.23172 -40.66419 -37.99574 -36.09618 -35.39335 -34.00499 -32.08656 -31.29000 -28.99627 -28.02084 -27.11440 -25.44557 -23.88665 -23.20037 -21.87204 -20.80275 -19.67750 -18.58332 -17.50416 -17.27026 -17.06033 -16.61860 -16.34408 -15.70203 -15.42303 -15.22230 -14.85624 -14.32086 -14.21972 -13.96056 -13.89744 -13.73254 -13.57305 -13.26612 -12.97974 -12.82413 -12.67906 -12.40921 -12.23086 -11.89632 -11.73897 -11.65023 -11.30155 -11.12069 -10.97469 -10.34992 -9.64476 -9.20727 -7.99731 -5.31609 0.16212 0.62314 1.20852 1.37393 1.42524 1.49285 2.02159 2.24801 2.51150 3.17938 3.32525 3.45671 3.61671 3.84046 3.97788 4.10683 4.24283 4.36947 4.38065 4.44344 4.63630 4.65061 4.69264 4.75063 4.81281 4.91133 5.03319 5.16795 5.27381 5.42775 5.48031 5.68015 5.79118 6.22368 6.33265 6.85043 7.11088 7.12769 7.86549 8.08473 9.22426 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.006443 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.803942 B = 4344.690976 C = 5155.409840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.024 0.976 4 C 0.114 3.886 5 N -0.589 5.589 6 C 0.076 3.924 7 C 0.596 3.404 8 O -0.570 6.570 9 C -0.126 4.126 10 C 0.109 3.891 11 N -0.350 5.350 12 C 0.075 3.925 13 N -0.098 5.098 14 N -0.224 5.224 15 N -0.742 5.742 16 C -0.219 4.219 17 H 0.045 0.955 18 C -0.068 4.068 19 N -0.990 5.990 20 Si 0.947 3.053 21 H -0.278 1.278 22 H -0.303 1.303 23 H -0.233 1.233 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.036 0.964 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.367 0.633 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.413 -1.850 21.259 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 H 0.042 0.958 4 C -0.009 4.009 5 N -0.318 5.318 6 C -0.067 4.067 7 C 0.383 3.617 8 O -0.450 6.450 9 C -0.266 4.266 10 C -0.049 4.049 11 N -0.135 5.135 12 C -0.064 4.064 13 N -0.079 5.079 14 N -0.097 5.097 15 N -0.386 5.386 16 C -0.351 4.351 17 H 0.063 0.937 18 C -0.258 4.258 19 N -0.641 5.641 20 Si 0.774 3.226 21 H -0.204 1.204 22 H -0.231 1.231 23 H -0.157 1.157 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.256 0.744 33 H 0.121 0.879 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.201 0.799 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.939 -2.327 20.719 23.545 hybrid contribution -0.128 0.162 -0.632 0.665 sum 10.811 -2.164 20.087 22.914 Atomic orbital electron populations 1.22182 0.96003 1.02077 1.00942 1.20800 0.93699 0.94954 0.86001 0.95769 1.21993 0.78105 1.02806 0.97996 1.47542 1.07020 1.21414 1.55783 1.22313 0.99784 0.86791 0.97810 1.17079 0.84469 0.82494 0.77644 1.90732 1.74263 1.29561 1.50407 1.21535 0.95733 0.98462 1.10874 1.23803 0.83287 0.99803 0.97999 1.50726 1.08738 1.18192 1.35826 1.22735 0.79773 1.00757 1.03118 1.81898 1.10679 1.01775 1.13511 1.74728 0.99109 1.20777 1.15120 1.42633 1.79947 1.09458 1.06557 1.18934 1.34694 0.93979 0.87444 0.93705 1.25485 1.02482 1.02804 0.95043 1.69905 1.55190 1.37793 1.01211 0.85569 0.77538 0.80552 0.78925 1.20426 1.23076 1.15712 0.90771 0.91730 0.95018 0.88258 0.87616 0.94540 0.88125 0.89663 0.74450 0.87888 0.84846 0.87072 0.79917 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.49 71.98 0.68 -4.50 16 2 C 0.15 6.15 3.20 44.99 0.14 6.29 16 3 H 0.02 1.13 8.08 -2.39 -0.02 1.11 16 4 C 0.11 3.57 5.04 86.38 0.44 4.00 16 5 N -0.59 -20.18 2.73 -850.56 -2.32 -22.50 16 6 C 0.08 2.50 8.12 127.77 1.04 3.54 16 7 C 0.60 21.16 7.66 86.69 0.66 21.83 16 8 O -0.57 -21.93 16.49 -4.00 -0.07 -21.99 16 9 C -0.13 -3.91 6.70 40.82 0.27 -3.64 16 10 C 0.11 2.35 11.31 83.85 0.95 3.30 16 11 N -0.35 -6.69 4.03 -368.59 -1.49 -8.17 16 12 C 0.07 0.46 11.51 127.77 1.47 1.93 16 13 N -0.10 -2.79 13.78 37.02 0.51 -2.28 16 14 N -0.22 -7.33 8.79 -49.99 -0.44 -7.77 16 15 N -0.74 -35.22 4.28 -322.96 -1.38 -36.60 16 16 C -0.22 -13.02 10.41 84.03 0.87 -12.15 16 17 H 0.04 2.99 8.06 -2.91 -0.02 2.96 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 19 N -0.99 -66.10 13.97 21.65 0.30 -65.80 16 20 Si 0.95 46.40 27.74 68.60 1.90 48.30 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.30 -15.36 7.11 99.48 0.71 -14.66 16 23 H -0.23 -9.91 5.23 99.48 0.52 -9.39 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 2.87 7.48 -2.38 -0.02 2.85 16 28 H 0.11 2.67 7.86 -2.39 -0.02 2.66 16 29 H 0.04 1.46 6.58 -2.39 -0.02 1.44 16 30 H 0.10 3.13 5.25 -2.39 -0.01 3.12 16 31 H 0.08 2.33 7.83 -2.39 -0.02 2.31 16 32 H 0.24 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.13 -0.09 8.14 -2.38 -0.02 -0.11 16 35 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.37 16.29 4.25 -92.71 -0.39 15.89 16 37 H 0.25 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -83.95 310.81 4.52 -79.42 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.50 Total: 20.46 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 7.00 Total: 16.94 kcal Atomic # 7 Polarization: -138.32 SS G_CDS: -4.82 Total: -143.13 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.07 Total: -21.99 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -83.95 4.52 -79.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676341567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.743 kcal (2) G-P(sol) polarization free energy of solvation -83.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds