Wall clock time and date at job start Mon Mar 30 2020 00:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47559 * 2 1 4 4 C 1.53002 * 109.47134 * 120.00700 * 2 1 3 5 5 N 1.46499 * 109.47088 * 175.00052 * 4 2 1 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 2 7 7 C 1.34777 * 120.00199 * 89.99979 * 5 4 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 5 4 10 10 C 1.50700 * 109.46869 * 179.72354 * 9 7 5 11 11 N 1.33241 * 125.52584 * 269.68822 * 10 9 7 12 12 C 1.30830 * 109.82844 * 179.85606 * 11 10 9 13 13 N 1.34430 * 108.07674 * 0.40877 * 12 11 10 14 14 H 0.96998 * 126.81705 * 179.78890 * 13 12 11 15 15 N 1.30706 * 125.52779 * 90.00107 * 10 9 7 16 16 N 1.46501 * 109.46892 * 240.00167 * 2 1 3 17 17 C 1.36944 * 120.00091 * 85.00490 * 16 2 1 18 18 H 1.08001 * 119.99486 * 359.97438 * 17 16 2 19 19 C 1.38811 * 120.00056 * 179.97438 * 17 16 2 20 20 N 1.31616 * 120.00113 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47177 * 59.99707 * 21 19 17 23 23 H 1.48500 * 109.47311 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47396 * 300.00134 * 21 19 17 25 25 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46673 * 299.99803 * 1 2 3 27 27 H 1.08999 * 109.46587 * 59.99690 * 1 2 3 28 28 H 1.09001 * 109.46980 * 54.99615 * 4 2 1 29 29 H 1.09005 * 109.46685 * 294.99708 * 4 2 1 30 30 H 1.08998 * 109.46921 * 269.99744 * 6 5 4 31 31 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 32 32 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 33 33 H 1.09004 * 109.46965 * 299.72211 * 9 7 5 34 34 H 1.08994 * 109.46990 * 59.72065 * 9 7 5 35 35 H 1.08001 * 125.95877 * 180.12478 * 12 11 10 36 36 H 0.96998 * 120.00373 * 264.99960 * 16 2 1 37 37 H 0.97001 * 120.00068 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9921 0.5610 7 6 4.2676 0.1490 1.7156 8 8 3.7495 1.1141 2.2363 9 6 5.7695 0.0438 1.6497 10 6 6.3869 1.2567 2.2968 11 7 6.7034 2.3905 1.6726 12 6 7.2167 3.2387 2.5263 13 7 7.2468 2.6485 3.7338 14 1 7.5773 3.0331 4.5607 15 7 6.7039 1.3650 3.5602 16 7 2.0183 -0.6906 -1.1962 17 6 2.1492 -0.0074 -2.3758 18 1 1.8920 1.0404 -2.4243 19 6 2.6123 -0.6616 -3.5091 20 7 2.9262 -1.9384 -3.4498 21 14 2.7901 0.2702 -5.1183 22 1 3.7446 1.3933 -4.9371 23 1 3.3003 -0.6478 -6.1681 24 1 1.4674 0.8061 -5.5288 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.6054 -1.7199 1.2950 29 1 1.7517 -0.1585 2.1369 30 1 4.2822 -2.7689 1.3095 31 1 3.4756 -2.3723 -0.2269 32 1 5.0851 -1.7022 0.1323 33 1 6.0943 -0.8538 2.1760 34 1 6.0844 -0.0121 0.6077 35 1 7.5609 4.2369 2.2995 36 1 2.2490 -1.6317 -1.1527 37 1 3.2502 -2.3955 -4.2417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676461734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:53 Heat of formation + Delta-G solvation = 70.624086 kcal Electronic energy + Delta-G solvation = -20592.652631 eV Core-core repulsion = 17407.763849 eV Total energy + Delta-G solvation = -3184.888782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08670 -39.43991 -36.27462 -34.15566 -33.25598 -32.03896 -31.59485 -29.30842 -28.57484 -26.69172 -25.23765 -23.53200 -22.80060 -21.01653 -19.94744 -18.77154 -18.24831 -17.23675 -16.75240 -15.85561 -15.49636 -15.09754 -14.88981 -14.55798 -13.73291 -13.58380 -13.32470 -12.94171 -12.56298 -12.24099 -12.13361 -12.04758 -11.88261 -11.66646 -11.30660 -11.20940 -10.78276 -10.64744 -10.31456 -10.15912 -10.03304 -10.00735 -9.80048 -9.58408 -9.30545 -8.86604 -8.08869 -6.89525 -5.73054 -2.99298 1.59854 2.61717 2.84800 3.04655 3.48556 3.52528 3.54189 3.55731 4.13308 4.63349 4.64938 4.89666 4.96327 5.45262 5.54845 5.55561 5.61419 5.67260 5.73639 5.92163 5.95774 6.17775 6.20549 6.33111 6.34970 6.40415 6.41985 6.76056 6.87230 6.94010 6.98454 7.22344 7.76327 7.82925 8.09376 8.47144 8.58675 9.58185 10.13977 10.50112 11.50050 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.005399 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.087948 B = 5185.337275 C = 5852.454165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.112 3.888 5 N -0.594 5.594 6 C 0.078 3.922 7 C 0.525 3.475 8 O -0.544 6.544 9 C -0.050 4.050 10 C 0.257 3.743 11 N -0.530 5.530 12 C 0.260 3.740 13 N -0.488 5.488 14 H 0.439 0.561 15 N -0.309 5.309 16 N -0.719 5.719 17 C -0.229 4.229 18 H 0.067 0.933 19 C -0.013 4.013 20 N -0.937 5.937 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.288 1.288 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.222 0.778 36 H 0.381 0.619 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 3.805 13.779 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.011 4.011 5 N -0.325 5.325 6 C -0.065 4.065 7 C 0.312 3.688 8 O -0.421 6.421 9 C -0.092 4.092 10 C -0.026 4.026 11 N -0.257 5.257 12 C -0.040 4.040 13 N -0.206 5.206 14 H 0.284 0.716 15 N -0.139 5.139 16 N -0.363 5.363 17 C -0.360 4.360 18 H 0.085 0.915 19 C -0.209 4.209 20 N -0.587 5.587 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.215 1.215 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.238 0.762 36 H 0.216 0.784 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.518 3.874 14.026 16.379 hybrid contribution 0.465 0.721 -0.609 1.052 sum 7.983 4.595 13.417 16.275 Atomic orbital electron populations 1.22368 0.98881 1.00781 1.00219 1.20664 0.91900 0.96381 0.86740 0.93024 1.21825 0.78776 1.01110 0.99413 1.47526 1.06674 1.21342 1.56973 1.21946 0.99930 0.86942 0.97710 1.19981 0.88191 0.82467 0.78207 1.90674 1.74910 1.31092 1.45468 1.19970 0.92890 0.93108 1.03260 1.23390 0.96634 0.94738 0.87813 1.70413 1.19455 1.01824 1.34015 1.26072 0.96440 0.99994 0.81468 1.48065 1.49265 1.11766 1.11509 0.71596 1.77938 1.19910 0.97579 1.18443 1.42459 1.78185 1.10365 1.05254 1.19198 1.35761 0.93793 0.87279 0.91481 1.24636 1.02446 0.95969 0.97817 1.69612 1.51573 1.08575 1.28910 0.86310 0.77753 0.78669 0.83746 1.21345 1.21795 1.21466 0.93487 0.94376 0.92605 0.90928 0.90294 0.93458 0.88864 0.91142 0.86858 0.85702 0.76228 0.78373 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.49 37.16 0.35 -2.67 16 2 C 0.15 3.20 3.20 -67.93 -0.22 2.99 16 3 H 0.05 1.21 8.08 -51.93 -0.42 0.80 16 4 C 0.11 1.97 5.05 -4.04 -0.02 1.95 16 5 N -0.59 -10.29 2.73 -181.57 -0.50 -10.79 16 6 C 0.08 1.19 9.87 59.85 0.59 1.78 16 7 C 0.53 9.64 7.67 -10.98 -0.08 9.55 16 8 O -0.54 -11.81 15.61 5.55 0.09 -11.72 16 9 C -0.05 -0.75 4.88 -29.03 -0.14 -0.90 16 10 C 0.26 4.18 6.63 -156.86 -1.04 3.14 16 11 N -0.53 -8.45 11.19 -11.98 -0.13 -8.59 16 12 C 0.26 2.82 13.13 -90.66 -1.19 1.63 16 13 N -0.49 -5.13 7.45 29.53 0.22 -4.91 16 14 H 0.44 2.66 8.96 -182.34 -1.63 1.02 16 15 N -0.31 -4.64 12.80 32.42 0.41 -4.22 16 16 N -0.72 -17.51 4.57 -53.42 -0.24 -17.75 16 17 C -0.23 -6.33 9.93 -15.06 -0.15 -6.48 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.94 -27.13 13.06 55.49 0.72 -26.41 16 21 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 29 H 0.08 1.37 7.42 -51.93 -0.39 0.99 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.67 5.62 -51.93 -0.29 1.38 16 32 H 0.07 1.02 6.43 -51.93 -0.33 0.68 16 33 H 0.11 1.35 8.11 -51.93 -0.42 0.93 16 34 H 0.13 1.82 7.40 -51.93 -0.38 1.44 16 35 H 0.22 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.38 9.41 5.33 -40.82 -0.22 9.19 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -36.44 315.80 -7.85 -44.29 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.17 Total: 7.32 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -2.00 Total: 10.52 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: 0.49 Total: -72.67 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.44 -7.85 -44.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676461734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.916 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds