Wall clock time and date at job start Mon Mar 30 2020 00:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47559 * 2 1 4 4 C 1.53002 * 109.47134 * 120.00700 * 2 1 3 5 5 N 1.46499 * 109.47088 * 175.00052 * 4 2 1 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 2 7 7 C 1.34777 * 120.00199 * 89.99979 * 5 4 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 5 4 10 10 C 1.50700 * 109.46869 * 179.72354 * 9 7 5 11 11 N 1.33241 * 125.52584 * 269.68822 * 10 9 7 12 12 C 1.30830 * 109.82844 * 179.85606 * 11 10 9 13 13 N 1.34430 * 108.07674 * 0.40877 * 12 11 10 14 14 H 0.96998 * 126.81705 * 179.78890 * 13 12 11 15 15 N 1.30706 * 125.52779 * 90.00107 * 10 9 7 16 16 N 1.46501 * 109.46892 * 240.00167 * 2 1 3 17 17 C 1.36944 * 120.00091 * 85.00490 * 16 2 1 18 18 H 1.08001 * 119.99486 * 359.97438 * 17 16 2 19 19 C 1.38811 * 120.00056 * 179.97438 * 17 16 2 20 20 N 1.31616 * 120.00113 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47177 * 59.99707 * 21 19 17 23 23 H 1.48500 * 109.47311 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47396 * 300.00134 * 21 19 17 25 25 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46673 * 299.99803 * 1 2 3 27 27 H 1.08999 * 109.46587 * 59.99690 * 1 2 3 28 28 H 1.09001 * 109.46980 * 54.99615 * 4 2 1 29 29 H 1.09005 * 109.46685 * 294.99708 * 4 2 1 30 30 H 1.08998 * 109.46921 * 269.99744 * 6 5 4 31 31 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 32 32 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 33 33 H 1.09004 * 109.46965 * 299.72211 * 9 7 5 34 34 H 1.08994 * 109.46990 * 59.72065 * 9 7 5 35 35 H 1.08001 * 125.95877 * 180.12478 * 12 11 10 36 36 H 0.96998 * 120.00373 * 264.99960 * 16 2 1 37 37 H 0.97001 * 120.00068 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9921 0.5610 7 6 4.2676 0.1490 1.7156 8 8 3.7495 1.1141 2.2363 9 6 5.7695 0.0438 1.6497 10 6 6.3869 1.2567 2.2968 11 7 6.7034 2.3905 1.6726 12 6 7.2167 3.2387 2.5263 13 7 7.2468 2.6485 3.7338 14 1 7.5773 3.0331 4.5607 15 7 6.7039 1.3650 3.5602 16 7 2.0183 -0.6906 -1.1962 17 6 2.1492 -0.0074 -2.3758 18 1 1.8920 1.0404 -2.4243 19 6 2.6123 -0.6616 -3.5091 20 7 2.9262 -1.9384 -3.4498 21 14 2.7901 0.2702 -5.1183 22 1 3.7446 1.3933 -4.9371 23 1 3.3003 -0.6478 -6.1681 24 1 1.4674 0.8061 -5.5288 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.6054 -1.7199 1.2950 29 1 1.7517 -0.1585 2.1369 30 1 4.2822 -2.7689 1.3095 31 1 3.4756 -2.3723 -0.2269 32 1 5.0851 -1.7022 0.1323 33 1 6.0943 -0.8538 2.1760 34 1 6.0844 -0.0121 0.6077 35 1 7.5609 4.2369 2.2995 36 1 2.2490 -1.6317 -1.1527 37 1 3.2502 -2.3955 -4.2417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676461734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:52 Heat of formation + Delta-G solvation = 44.690175 kcal Electronic energy + Delta-G solvation = -20593.777209 eV Core-core repulsion = 17407.763849 eV Total energy + Delta-G solvation = -3186.013361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.07473 -40.85201 -37.91152 -35.77924 -34.41466 -33.81762 -32.68281 -30.85834 -30.06999 -28.04331 -26.69943 -25.49321 -23.74170 -22.31642 -21.44102 -20.07633 -19.24376 -19.20926 -18.12652 -17.18912 -16.86738 -16.48731 -16.17122 -15.94917 -15.51595 -15.27475 -14.67718 -14.23792 -14.01854 -13.73893 -13.62520 -13.23798 -13.15198 -13.03683 -13.01997 -12.75518 -12.66161 -12.46004 -12.18400 -11.83833 -11.58776 -11.22479 -11.06524 -10.98124 -10.89903 -10.54984 -9.53119 -8.90546 -7.88525 -5.13572 0.63922 1.49295 1.50562 1.56447 1.61887 1.75118 1.86612 2.30608 2.60361 3.18521 3.45052 3.63402 3.69791 3.92475 4.14061 4.14940 4.33636 4.40691 4.46058 4.58071 4.66083 4.72540 4.77869 4.92339 5.01820 5.21690 5.25523 5.27510 5.32486 5.41216 5.56151 5.70940 6.28886 6.34220 6.46883 7.12255 7.19431 7.42547 8.14567 8.44463 9.33757 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.005399 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.087948 B = 5185.337275 C = 5852.454165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.017 0.983 4 C 0.118 3.882 5 N -0.595 5.595 6 C 0.079 3.921 7 C 0.519 3.481 8 O -0.584 6.584 9 C -0.045 4.045 10 C 0.236 3.764 11 N -0.583 5.583 12 C 0.274 3.726 13 N -0.473 5.473 14 H 0.459 0.541 15 N -0.334 5.334 16 N -0.723 5.723 17 C -0.236 4.236 18 H 0.057 0.943 19 C -0.061 4.061 20 N -0.958 5.958 21 Si 0.959 3.041 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.285 1.285 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.273 0.727 36 H 0.379 0.621 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 4.041 14.674 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.035 0.965 4 C -0.006 4.006 5 N -0.326 5.326 6 C -0.063 4.063 7 C 0.307 3.693 8 O -0.465 6.465 9 C -0.087 4.087 10 C -0.047 4.047 11 N -0.312 5.312 12 C -0.024 4.024 13 N -0.193 5.193 14 H 0.308 0.692 15 N -0.164 5.164 16 N -0.366 5.366 17 C -0.368 4.368 18 H 0.075 0.925 19 C -0.254 4.254 20 N -0.608 5.608 21 Si 0.789 3.211 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.211 1.211 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.289 0.711 36 H 0.215 0.785 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.203 4.116 14.965 17.555 hybrid contribution 0.270 0.739 -0.804 1.125 sum 8.473 4.855 14.161 17.201 Atomic orbital electron populations 1.22211 0.96883 1.01556 1.00573 1.20763 0.93269 0.94645 0.87030 0.96451 1.21743 0.79341 1.01973 0.97537 1.47663 1.06606 1.21776 1.56538 1.22027 0.99210 0.87024 0.98062 1.20551 0.89574 0.81784 0.77415 1.90637 1.75897 1.32604 1.47389 1.19973 0.90410 0.94537 1.03731 1.23527 0.97526 0.95305 0.88358 1.70370 1.21756 1.02838 1.36245 1.26995 0.94019 1.00827 0.80537 1.47979 1.48236 1.10474 1.12596 0.69226 1.77809 1.20639 0.99872 1.18068 1.42502 1.78441 1.10258 1.05392 1.19374 1.35140 0.93573 0.88689 0.92524 1.25238 1.02975 0.96830 1.00339 1.69724 1.52424 1.09435 1.29262 0.85441 0.77570 0.77512 0.80578 1.21357 1.21688 1.21114 0.92425 0.91641 0.94620 0.88512 0.89956 0.89526 0.91493 0.90624 0.83858 0.85722 0.71146 0.78518 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.55 9.49 71.98 0.68 -4.86 16 2 C 0.15 6.37 3.20 44.99 0.14 6.51 16 3 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 4 C 0.12 4.04 5.05 86.38 0.44 4.48 16 5 N -0.60 -20.22 2.73 -846.74 -2.31 -22.53 16 6 C 0.08 2.31 9.87 127.77 1.26 3.57 16 7 C 0.52 18.96 7.67 87.66 0.67 19.63 16 8 O -0.58 -25.69 15.61 -3.04 -0.05 -25.73 16 9 C -0.04 -1.33 4.88 29.10 0.14 -1.18 16 10 C 0.24 7.55 6.63 138.63 0.92 8.47 16 11 N -0.58 -18.21 11.19 -191.81 -2.15 -20.36 16 12 C 0.27 5.38 13.13 180.36 2.37 7.75 16 13 N -0.47 -9.04 7.45 -60.49 -0.45 -9.49 16 14 H 0.46 4.46 8.96 -213.10 -1.91 2.55 16 15 N -0.33 -9.66 12.80 -51.34 -0.66 -10.32 16 16 N -0.72 -35.42 4.57 -322.93 -1.47 -36.90 16 17 C -0.24 -13.17 9.93 84.03 0.83 -12.33 16 18 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 19 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 20 N -0.96 -55.56 13.06 21.65 0.28 -55.28 16 21 Si 0.96 46.45 29.55 68.60 2.03 48.47 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.10 2.86 8.07 -2.39 -0.02 2.84 16 29 H 0.08 2.79 7.42 -2.38 -0.02 2.78 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.36 5.62 -2.39 -0.01 2.34 16 32 H 0.08 2.11 6.43 -2.39 -0.02 2.09 16 33 H 0.14 3.21 8.11 -2.38 -0.02 3.19 16 34 H 0.12 3.64 7.40 -2.39 -0.02 3.62 16 35 H 0.27 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.38 18.81 5.33 -92.71 -0.49 18.32 16 37 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -79.81 315.80 1.85 -77.96 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -1.30 Total: 25.11 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 7.93 Total: 29.06 kcal Atomic # 7 Polarization: -148.12 SS G_CDS: -6.76 Total: -154.87 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -79.81 1.85 -77.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676461734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.654 kcal (2) G-P(sol) polarization free energy of solvation -79.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds